M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_54186

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_54186 439 9.16 Mlig455_067749

Neo: -

Age: logFC(26M/2M)=0.349

 RNF103 Mlig455_067749 {REF} {Length: 2695} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=47.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.1]; RING-type zinc-finger [PF13445.8, score=28.7]; zinc-RING finger domain [PF14634.8, score=28.5]; RING-H2 zinc finger domain [PF12678.9, score=27.6]; RING-like zinc finger [PF17123.7, score=27.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=22.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.3]} {Human: ENSG00000239305, RNF103, ring finger protein 103, [RH, Score=67.0, Expect=7e-11]} {Mouse: ENSMUSG00000052656, Rnf103, ring finger protein 103, [RH, Score=71.2, Expect=2e-12]} {Dmel: FBgn0034314, nopo, no poles, [Score=52.4, Expect=8e-07]} {Celegans: WBGene00015194, B0432.13, [Score=63.2, Expect=3e-10]} {Smed: dd_Smed_v6_15562_0_1, dd_Smed_v6_15562_0_1, [RH, Score=58.5, Expect=4e-09]} {RNA1509_18727} {RNA1310_47846, RNA1509_18727} {RNA1509_18727, RNA815_29837.1}

Cumulative graph for MligTC455_54186

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.342 3.47 0.00741 0.26094
RegionR2 0.349 3.47 0.50172 0.88091
RegionR3 -0.18 3.47 0.67619 1.00000
RegionR4 -0.836 3.47 0.09347 0.29402
RegionR5 0.31 3.47 0.37418 0.72738
RegionR6 -0.087 3.47 0.84622 1.00000
RegionR7 -2.04 3.47 0.01620 0.23072
RegionR8 0.141 3.47 0.85628 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.442 3.47 0.09597 0.80817
RegenerationR2 -0.453 3.47 0.31474 0.75345
RegenerationR3 0.255 3.47 0.59885 0.90756
RegenerationR4 0.541 3.47 0.25731 0.70529
RegenerationR5 0.234 3.47 0.56243 0.89272
RegenerationR6 -0.28 3.47 0.57999 0.85775
RegenerationBL -0.637 3.47 0.46916 0.83538
RegenerationTP 1.362 3.47 0.06856 0.42115


Genes with expression patterns similar to MligTC455_54186

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_54186 439 9.16 Mlig455_067749

Neo: -

Age: logFC(26M/2M)=0.349

 RNF103 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_067749 {REF} {Length: 2695} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=47.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.1]; RING-type zinc-finger [PF13445.8, score=28.7]; zinc-RING finger domain [PF14634.8, score=28.5]; RING-H2 zinc finger domain [PF12678.9, score=27.6]; RING-like zinc finger [PF17123.7, score=27.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=22.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.3]} {Human: ENSG00000239305, RNF103, ring finger protein 103, [RH, Score=67.0, Expect=7e-11]} {Mouse: ENSMUSG00000052656, Rnf103, ring finger protein 103, [RH, Score=71.2, Expect=2e-12]} {Dmel: FBgn0034314, nopo, no poles, [Score=52.4, Expect=8e-07]} {Celegans: WBGene00015194, B0432.13, [Score=63.2, Expect=3e-10]} {Smed: dd_Smed_v6_15562_0_1, dd_Smed_v6_15562_0_1, [RH, Score=58.5, Expect=4e-09]} {RNA1509_18727} {RNA1310_47846, RNA1509_18727} {RNA1509_18727, RNA815_29837.1}
2. MligTC455_45900 532 11.08 Mlig455_033096, Mlig455_033125

Neo: -

Age: Up-Down-Down

 TFCP2, UBP1 1.723 - 0.771 - - - 0.952

Mlig455_033096 {REF} {Length: 5093} {Pfam: CP2 transcription factor [PF04516.17, score=177.5]; SAM domain (Sterile alpha motif) [PF18016.3, score=66.2]} {Human: ENSG00000153560, UBP1, upstream binding protein 1, [RH, Score=348, Expect=1e-112]; ENSG00000135457, TFCP2, transcription factor CP2, [RH, Score=345, Expect=3e-112]} {Mouse: ENSMUSG00000009741, Ubp1, upstream binding protein 1, [RH, Score=350, Expect=7e-114]; ENSMUSG00000009733, Tfcp2, transcription factor CP2, [RH, Score=346, Expect=9e-113]} {Dmel: FBgn0050011, gem, gemini, [Score=252, Expect=3e-73]} {Celegans: WBGene00001707, grh-1, GRainyHead (Drosophila transcription factor) homolog; Grainyhead transcription factor, [Score=73.6, Expect=1e-13]} {RNA1509_25477, RNA1509_26448, RNA1509_45763} {RNA1310_9911.1, RNA1509_25477, RNA1509_26448, RNA1509_45763} {RNA1509_25477, RNA1509_26448, RNA1509_45763, RNA815_14073}

Mlig455_033125 {REF} {Length: 4075} {TRANSSPLICED} {Pfam: CP2 transcription factor [PF04516.17, score=177.1]; SAM domain (Sterile alpha motif) [PF18016.3, score=68.3]} {Human: ENSG00000135457, TFCP2, transcription factor CP2, [RH, Score=335, Expect=2e-109]; ENSG00000153560, UBP1, upstream binding protein 1, [RH, Score=333, Expect=6e-108]} {Mouse: ENSMUSG00000009733, Tfcp2, transcription factor CP2, [RH, Score=337, Expect=4e-110]; ENSMUSG00000009741, Ubp1, upstream binding protein 1, [RH, Score=334, Expect=1e-108]} {Dmel: FBgn0050011, gem, gemini, [Score=248, Expect=7e-73]} {Celegans: WBGene00001707, grh-1, GRainyHead (Drosophila transcription factor) homolog; Grainyhead transcription factor, [Score=78.2, Expect=3e-15]} {RNA1509_26448} {RNA1310_9911.2} {RNA815_14073}
3. MligTC455_19166 518 10.78 Mlig455_063664

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.435

 LAMTOR3 0.964 - - - 0.964 - - Mlig455_063664 {REF} {Length: 1150} {TRANSSPLICED} {Pfam: Mitogen-activated protein kinase kinase 1 interacting [PF08923.12, score=74.3]} {Human: ENSG00000109270, LAMTOR3, late endosomal/lysosomal adaptor, MAPK and MTOR activator 3, [RH, Score=69.7, Expect=1e-15]} {Mouse: ENSMUSG00000091512, Lamtor3, late endosomal/lysosomal adaptor, MAPK and MTOR activator 3, [RH, Score=68.6, Expect=2e-15]} {Dmel: FBgn0032642, CG5110, [RH, Score=67.8, Expect=3e-15]} {RNA1509_29566, RNA1509_30827} {RNA1310_5412, RNA1509_29566, RNA1509_30827} {RNA1509_29566, RNA1509_30827, RNA815_5585.1}
4. MligTC455_24675 396 8.24 Mlig455_062077

Neo: Int S/G2/M

Age: -

 NUP85 0.956 - - - - - 0.956 Mlig455_062077 {REF} {Length: 3043} {Pfam: Nup85 Nucleoporin [PF07575.15, score=248.0]} {Human: ENSG00000125450, NUP85, nucleoporin 85, [Score=211, Expect=1e-61]} {Mouse: ENSMUSG00000020739, Nup85, nucleoporin 85, [Score=207, Expect=4e-60]} {Dmel: FBgn0034310, Nup75, Nucleoporin 75kD, [Score=166, Expect=3e-45]} {Smed: dd_Smed_v6_6403_0_1, dd_Smed_v6_6403_0_1, [Score=124, Expect=2e-30]} {RNA1509_16274, RNA1509_49609} {RNA1310_10738, RNA1509_49609} {RNA1509_49609, RNA815_23975}
5. MligTC455_38655 577 12.03 Mlig455_010610

Neo: -

Age: -

 ADAP1 0.955 - - - - - 0.955 Mlig455_010610 {REF} {Length: 2844} {TRANSSPLICED} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=64.1]; PH domain [PF00169.31, score=58.2]; PH domain [PF14593.8, score=19.1]} {Human: ENSG00000105963, ADAP1, ArfGAP with dual PH domains 1, [Score=183, Expect=2e-53]} {Mouse: ENSMUSG00000056413, Adap1, ArfGAP with dual PH domains 1, [Score=184, Expect=6e-54]} {Dmel: FBgn0033349, CG8243, [Score=53.1, Expect=2e-07]} {Smed: dd_Smed_v6_1479_0_1, dd_Smed_v6_1479_0_1, [Score=141, Expect=3e-38]} {RNA1310_26512} {RNA815_18777}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA