M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_54709

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_54709 12 0.25 Mlig455_006077

Neo: -

Age: -

 Mlig455_006077 {REF} {Length: 28} {TRANSSPLICED} {NoTransDecoderORF}

Cumulative graph for MligTC455_54709

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.179 0.601 0.99956 1.00000
RegionR2 2.959 0.601 0.99989 1.00000
RegionR3 2.302 0.601 0.18963 0.72579
RegionR4 -4.325 0.601 0.99978 1.00000
RegionR5 1.674 0.601 0.29353 0.62637
RegionR6 3.968 0.601 0.05190 0.42760
RegionR7 0.012 0.601 0.99984 1.00000
RegionR8 -0.412 0.601 0.99961 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 4.988 0.601 0.99994 1.00000
RegenerationR2 1.474 0.601 0.45817 0.85152
RegenerationR3 1.903 0.601 0.32369 0.75149
RegenerationR4 2.474 0.601 0.99981 1.00000
RegenerationR5 -1.297 0.601 0.62315 0.91988
RegenerationR6 -2.279 0.601 0.59425 0.86603
RegenerationBL -0.352 0.601 0.99987 1.00000
RegenerationTP 4.008 0.601 0.35037 0.79225


Genes with expression patterns similar to MligTC455_54709

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_54709 12 0.25 Mlig455_006077

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_006077 {REF} {Length: 28} {TRANSSPLICED} {NoTransDecoderORF}
2. MligTC455_11391 8 0.17 Mlig455_039931

Neo: -

Age: -

 NRDC 0.983 - - - - 0.983 - Mlig455_039931 {REF} {Length: 2018} {Pfam: Insulinase (Peptidase family M16) [PF00675.22, score=108.0]} {Human: ENSG00000078618, NRDC, nardilysin convertase, [Score=126, Expect=6e-34]} {Mouse: ENSMUSG00000053510, Nrd1, nardilysin, N-arginine dibasic convertase, NRD convertase 1, [Score=126, Expect=4e-34]} {Dmel: FBgn0037037, CG10588, [Score=98.6, Expect=1e-24]} {Celegans: WBGene00016185, C28F5.4, Putative zinc protease C28F5.4, [Score=106, Expect=2e-27]} {Smed: dd_Smed_v6_5554_0_1, dd_Smed_v6_5554_0_1, [Score=143, Expect=3e-40]} {RNA1509_34049} {RNA1310_1454.2} {RNA815_766.1}
3. MligTC455_16050 56 1.17 Mlig455_005538, Mlig455_015621, Mlig455_064144

Neo: -

Age: Down-Up-Down

 0.973 - - - - 0.973 -

Mlig455_005538 {REF} {Length: 2036} {RNA1509_38546} {RNA1310_1911.1} {RNA815_61177}

Mlig455_015621 {REF} {Length: 2076} {RNA1509_38546} {RNA1310_1911.1} {RNA815_61177}

Mlig455_064144 {REF} {Length: 2045} {RNA1509_38546} {RNA1310_1911.1} {RNA815_61177}
4. MligTC455_12336 20 0.41 Mlig455_021296

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_021296 {REF} {Length: 479} {NoTransDecoderORF}
5. MligTC455_43518 20 0.41 Mlig455_037187, Mlig455_052338

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.897

 0.961 - - - - 0.961 -

Mlig455_037187 {REF} {Length: 3652} {Pfam: Retinitis pigmentosa G-protein regulator interacting C-terminal [PF18111.3, score=189.1]; N-terminal C2 in EEIG1 and EHBP1 proteins [PF10358.11, score=18.5]} {Smed: dd_Smed_v6_11425_0_1, dd_Smed_v6_11425_0_1, [Score=70.1, Expect=4e-12]} {RNA1509_43072} {RNA1310_18123} {RNA815_7047}

Mlig455_052338 {REF} {Length: 2834} {Pfam: Retinitis pigmentosa G-protein regulator interacting C-terminal [PF18111.3, score=180.5]} {Smed: dd_Smed_v6_11425_0_1, dd_Smed_v6_11425_0_1, [Score=69.7, Expect=5e-12]} {RNA1509_43072} {RNA1310_18123} {RNA815_7047}
6. MligTC455_42366 135 2.82 Mlig455_039082

Neo: -

Age: Down-Down-Up

 0.96 - - - - 0.960 - Mlig455_039082 {REF} {Length: 2147} {RNA1509_36917} {RNA1310_11029.2, RNA1509_36917} {RNA1509_36917, RNA815_9526}
7. MligTC455_30987 227 4.72 Mlig455_018454, Mlig455_018455

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_018454 {REF} {Length: 1458} {Pfam: Endomucin [PF07010.14, score=19.1]} {RNA1509_30262} {RNA1310_39583} {RNA815_17492}

Mlig455_018455 {REF} {Length: 1763} {Pfam: Endomucin [PF07010.14, score=20.1]} {RNA1509_30262} {RNA1310_39583} {RNA815_17492}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA