Data search


search
Exact
Search

Results for MligTC455_54947

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_54947 12 0.25 Mlig455_015607

Neo: -

Age: -

Mlig455_015607 {REF} {Length: 22} {TRANSSPLICED} {NoTransDecoderORF}

Cumulative graph for MligTC455_54947

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_54947

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09785 34 0.71 Mlig455_025336

Neo: -

Age: -

1 - - - - 1.000 - Mlig455_025336 {REF} {Length: 963} {NoTransDecoderORF} {RNA1310_73105}
2. MligTC455_16261 24 0.49 Mlig455_049361, Mlig455_062305

Neo: -

Age: -

1 - - - - 1.000 -

Mlig455_049361 {REF} {Length: 2380} {TRANSSPLICED} {RNA1509_48283} {RNA1310_8368.1} {RNA815_11031}

Mlig455_062305 {REF} {Length: 2151} {TRANSSPLICED} {RNA1509_48283} {RNA1310_8368.1, RNA1509_48283} {RNA1509_48283, RNA815_11031}
3. MligTC455_54947 12 0.25 Mlig455_015607

Neo: -

Age: -

1 - - - - 1.000 - Mlig455_015607 {REF} {Length: 22} {TRANSSPLICED} {NoTransDecoderORF}
4. MligTC455_11890 21 0.45 Mlig455_000827

Neo: -

Age: -

0.999 - - - - 0.999 - Mlig455_000827 {REF} {Length: 2241} {RNA1509_2911} {RNA1310_117291}
5. MligTC455_12868 25 0.52 Mlig455_060768

Neo: -

Age: -

0.999 - - - - 0.999 - Mlig455_060768 {REF} {Length: 953} {RNA1509_46265} {RNA1310_72053} {RNA815_52075}
6. MligTC455_34903 10 0.2 Mlig455_049524

Neo: -

Age: -

0.999 - - - - 0.999 - Mlig455_049524 {REF} {Length: 986} {TRANSSPLICED} {RNA1310_135264}
7. MligTC455_06412 27 0.55 Mlig455_041462, Mlig455_041473

Neo: -

Age: -

Region-enriched R5: 5.762/0.00030

Regeneration-upregulated R4: 10.498

Regeneration-enriched R4: 10.498

HAND2 0.997 - - - - 0.997 -

Mlig455_041462 {REF} {Length: 903} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=46.2]} {Human: ENSG00000164107, HAND2, heart and neural crest derivatives expressed 2, [Score=60.5, Expect=4e-11]; ENSG00000113196, HAND1, heart and neural crest derivatives expressed 1, [Score=60.1, Expect=9e-11]} {Mouse: ENSMUSG00000037335, Hand1, heart and neural crest derivatives expressed 1, [Score=61.2, Expect=3e-11]; ENSMUSG00000038193, Hand2, heart and neural crest derivatives expressed 2, [Score=60.5, Expect=4e-11]} {Dmel: FBgn0032209, Hand, [Score=65.9, Expect=1e-13]} {Celegans: WBGene00003018, lin-32, [Score=47.8, Expect=3e-07]} {Smed: dd_Smed_v6_13704_0_1, dd_Smed_v6_13704_0_1, [Score=57.4, Expect=3e-10]}

Mlig455_041473 {REF} {Length: 889} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=45.4]} {Human: ENSG00000164107, HAND2, heart and neural crest derivatives expressed 2, [Score=60.5, Expect=6e-11]; ENSG00000113196, HAND1, heart and neural crest derivatives expressed 1, [Score=59.7, Expect=9e-11]; ENSG00000172238, ATOH1, atonal bHLH transcription factor 1, [Score=57.8, Expect=1e-09]} {Mouse: ENSMUSG00000037335, Hand1, heart and neural crest derivatives expressed 1, [Score=60.8, Expect=2e-11]; ENSMUSG00000038193, Hand2, heart and neural crest derivatives expressed 2, [Score=60.5, Expect=4e-11]} {Dmel: FBgn0032209, Hand, [Score=65.5, Expect=2e-13]} {Celegans: WBGene00003018, lin-32, [Score=47.4, Expect=4e-07]} {Smed: dd_Smed_v6_13704_0_1, dd_Smed_v6_13704_0_1, [Score=55.5, Expect=1e-09]}
8. MligTC455_08172 12 0.25 Mlig455_051328

Neo: Germline

Age: -

Region-enriched R4: 4.350/0.04725

0.997 - - - - 0.997 - Mlig455_051328 {REF} {Length: 1550} {RNA1310_38905} {RNA815_29479}
9. MligTC455_14324 7 0.15 Mlig455_003747

Neo: -

Age: -

0.989 - - - - 0.989 - Mlig455_003747 {REF} {Length: 3793} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=135.5]} {Smed: dd_Smed_v6_15195_0_1, dd_Smed_v6_15195_0_1, [Score=229, Expect=1e-67]} {RNA1310_97357} {RNA815_45666}
10. MligTC455_01852 30 0.63 Mlig455_004873

Neo: -

Age: -

0.984 - - - - 0.984 - Mlig455_004873 {REF} {Length: 266} {NoTransDecoderORF} {RNA1509_19234} {RNA1310_26506.1} {RNA815_18306}
11. MligTC455_08012 77 1.61 Mlig455_012875

Neo: -

Age: -

0.984 - - - - 0.984 - Mlig455_012875 {REF} {Length: 362}
12. MligTC455_09093 4 0.09 Mlig455_013577

Neo: -

Age: -

0.984 - - - - 0.984 - Mlig455_013577 {REF} {Length: 936}
13. MligTC455_17137 35 0.74 Mlig455_057097

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.464

0.983 - - - - 0.983 - Mlig455_057097 {REF} {Length: 2458} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=47.0]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=32.2]} {Mouse: ENSMUSG00000058400, Qrfpr, pyroglutamylated RFamide peptide receptor, [Score=53.1, Expect=3e-07]} {Dmel: FBgn0053696, CNMaR, CNMamide Receptor, [Score=62.4, Expect=3e-10]} {Celegans: WBGene00020586, frpr-18, FLP-2 receptor; FMRFamide Peptide Receptor family, [Score=63.9, Expect=7e-11]} {Smed: dd_Smed_v6_12500_0_1, dd_Smed_v6_12500_0_1, [Score=236, Expect=2e-73]} {RNA1310_39525} {RNA815_20959}
14. MligTC455_06431 16 0.33 Mlig455_052844

Neo: -

Age: Down-Up-Down

0.981 - - - - 0.981 - Mlig455_052844 {REF} {Length: 2363} {RNA1509_48491} {RNA1310_28993} {RNA815_35050}
15. MligTC455_52962 100 2.08 Mlig455_018565

Neo: -

Age: Up-Down-Down

Region-enriched R2: 4.692/0.01678

ZC3H3 0.974 - - - - 0.974 - Mlig455_018565 {REF} {Length: 2655} {TRANSSPLICED} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=24.1]} {Human: ENSG00000014164, ZC3H3, zinc finger CCCH-type containing 3, [RH, Score=96.7, Expect=4e-21]} {Mouse: ENSMUSG00000075600, Zc3h3, zinc finger CCCH type containing 3, [RH, Score=99.4, Expect=4e-22]} {Dmel: FBgn0035900, ZC3H3, [RH, Score=67.4, Expect=6e-12]} {RNA1509_34328, RNA1509_9607} {RNA1310_10963.1, RNA1509_34328, RNA1509_9607} {RNA1509_34328, RNA1509_9607, RNA815_18673}
16. MligTC455_08137 23 0.48 Mlig455_004688

Neo: -

Age: -

0.973 - - - - 0.973 - Mlig455_004688 {REF} {Length: 889} {NoTransDecoderORF} {RNA1509_51194} {RNA1310_39009} {RNA815_24948}
17. MligTC455_08138 22 0.47 Mlig455_004764

Neo: -

Age: -

FRMD6 0.973 - - - - 0.973 - Mlig455_004764 {REF} {Length: 5670} {TRANSSPLICED} {Pfam: FERM central domain [PF00373.20, score=40.8]; FERM N-terminal domain [PF09379.12, score=25.0]; FERM C-terminal PH-like domain [PF09380.12, score=24.9]} {Human: ENSG00000139926, FRMD6, FERM domain containing 6, [RH, Score=116, Expect=1e-26]} {Mouse: ENSMUSG00000048285, Frmd6, FERM domain containing 6, [RH, Score=121, Expect=2e-28]} {Smed: dd_Smed_v6_11160_0_1, dd_Smed_v6_11160_0_1, [RH, Score=154, Expect=5e-39]} {RNA1509_32339, RNA1509_41007} {RNA1310_13533, RNA1509_41007} {RNA1509_41007, RNA815_9082}
18. MligTC455_45668 46 0.96 Mlig455_055353

Neo: Int S/G2/M

Age: Up-Down-Down, logFC(26M/2M)=-0.406

Region-enriched R2: 5.818/0.01983

0.97 - - - - 0.970 - Mlig455_055353 {REF} {Length: 2798} {RNA1509_31795} {RNA1310_13390} {RNA815_9314.1}
19. MligTC455_08107 12 0.25 Mlig455_025967

Neo: Int S/G2/M

Age: -

SETMAR 0.969 - - - - 0.969 - Mlig455_025967 {REF} {Length: 648} {Pfam: DDE superfamily endonuclease [PF13358.8, score=27.3]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=87.4, Expect=2e-20]} {Smed: dd_Smed_v6_13618_0_23, dd_Smed_v6_13618_0_23, [RH, Score=78.6, Expect=7e-20]} {RNA1509_47328} {RNA1310_11820} {RNA815_59673}
20. MligTC455_36148 37 0.78 Mlig455_033900

Neo: -

Age: -

Regeneration-downregulated R2: -5.989

Regeneration-depleted R2: -5.989

0.967 - - - - 0.967 - Mlig455_033900 {REF} {Length: 624} {NoTransDecoderORF}
21. MligTC455_07769 13 0.27 Mlig455_003660, Mlig455_003871

Neo: Int S/G2/M

Age: -

SETMAR 0.963 - - - - 0.963 -

Mlig455_003660 {REF} {Length: 1236} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=35.3]; Transposase (partial DDE domain) [PF01359.20, score=24.6]; Homeodomain-like domain [PF13565.8, score=22.6]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=119, Expect=6e-31]} {Smed: dd_Smed_v6_9592_1_13, dd_Smed_v6_9592_1_13, [RH, Score=46.6, Expect=5e-07]} {RNA1509_51224} {RNA1310_3855.1} {RNA815_19895}

Mlig455_003871 {REF} {Length: 1355} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=35.3]; Transposase (partial DDE domain) [PF01359.20, score=24.6]; Homeodomain-like domain [PF13565.8, score=22.6]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=119, Expect=6e-31]} {Smed: dd_Smed_v6_9592_1_13, dd_Smed_v6_9592_1_13, [RH, Score=46.6, Expect=5e-07]} {RNA1509_51224} {RNA1310_3855.1} {RNA815_19895}
22. MligTC455_13245 5 0.11 Mlig455_045966

Neo: -

Age: -

0.959 - - - - 0.959 - Mlig455_045966 {REF} {Length: 1197} {NoTransDecoderORF} {RNA1509_51083} {RNA1310_68670.1} {RNA815_13947}
23. MligTC455_07682 10 0.21 Mlig455_026574

Neo: -

Age: -

0.955 - - - - 0.955 - Mlig455_026574 {REF} {Length: 1199} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_110798}
24. MligTC455_57056 12 0.25 Mlig455_034403

Neo: -

Age: -

0.955 - - - - 0.955 - Mlig455_034403 {REF} {Length: 477} {NoTransDecoderORF} {RNA1509_29754} {RNA1310_34418} {RNA815_29995}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA