M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_55968

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_55968 6 0.12 Mlig455_030296

Neo: -

Age: -

 Mlig455_030296 {REF} {Length: 725} {NoTransDecoderORF} {RNA1509_34276} {RNA1310_71545} {RNA815_59695}

Cumulative graph for MligTC455_55968

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_55968

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_55968 6 0.12 Mlig455_030296

Neo: -

Age: -

 1 - - - - - 1.000 Mlig455_030296 {REF} {Length: 725} {NoTransDecoderORF} {RNA1509_34276} {RNA1310_71545} {RNA815_59695}
2. MligTC455_28331 23 0.48 Mlig455_057516

Neo: -

Age: -

 0.993 - - - - - 0.993 Mlig455_057516 {REF} {Length: 1069} {RNA1509_52975} {RNA1310_45589} {RNA815_54554}
3. MligTC455_09449 15 0.32 Mlig455_068073

Neo: -

Age: -

 0.989 - - - - - 0.989 Mlig455_068073 {REF} {Length: 810} {Pfam: F5/8 type C domain [PF00754.27, score=21.9]} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [Score=50.8, Expect=3e-08]} {RNA1310_32867}
4. MligTC455_51168 13 0.26 Mlig455_064570

Neo: -

Age: -

 0.986 - - - - - 0.986 Mlig455_064570 {REF} {Length: 248} {RNA1509_27263}
5. MligTC455_54230 22 0.46 Mlig455_033979

Neo: Int S/G2/M

Age: -

 0.984 - - - - - 0.984 Mlig455_033979 {REF} {Length: 3178} {RNA1310_82897} {RNA815_45268}
6. MligTC455_08922 13 0.26 Mlig455_060254

Neo: -

Age: -

 0.979 - - - - - 0.979 Mlig455_060254 {REF} {Length: 1791} {NoTransDecoderORF} {RNA1509_46209} {RNA1310_113899} {RNA815_58067}
7. MligTC455_12669 49 1.03 Mlig455_020384

Neo: -

Age: -

 0.977 - - - - - 0.977 Mlig455_020384 {REF} {Length: 240} {RNA1310_94238}
8. MligTC455_01670 53 1.1 Mlig455_064916

Neo: -

Age: -

 0.976 - - - - - 0.976 Mlig455_064916 {REF} {Length: 1064} {NoTransDecoderORF} {RNA1310_37680}
9. MligTC455_04340 21 0.44 Mlig455_038731

Neo: -

Age: -

 0.972 - - - - - 0.972 Mlig455_038731 {REF} {Length: 672} {NoTransDecoderORF} {RNA1310_110801}
10. MligTC455_57148 12 0.24 Mlig455_017544

Neo: -

Age: -

 0.972 - - - - - 0.972 Mlig455_017544 {REF} {Length: 195} {NoTransDecoderORF} {RNA1310_40177}
11. MligTC455_15185 53 1.1 Mlig455_016658

Neo: -

Age: -

 0.971 - - - - - 0.971 Mlig455_016658 {REF} {Length: 721} {NoTransDecoderORF} {RNA1310_50815} {RNA815_27489}
12. MligTC455_56521 19 0.4 Mlig455_039810

Neo: -

Age: -

 0.964 - - - - - 0.964 Mlig455_039810 {REF} {Length: 221} {NoTransDecoderORF} {RNA1310_126700}
13. MligTC455_15186 51 1.07 Mlig455_016725

Neo: -

Age: -

 0.963 - - - - - 0.963 Mlig455_016725 {REF} {Length: 446} {RNA1310_50815} {RNA815_27489}
14. MligTC455_10164 25 0.53 Mlig455_047948

Neo: -

Age: -

 0.96 - - - - - 0.960 Mlig455_047948 {REF} {Length: 437} {NoTransDecoderORF} {RNA1509_42160} {RNA1310_38543} {RNA815_64948}
15. MligTC455_26709 16729 348.53 Mlig455_000778

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.490

Region-enriched R2: 4.780/0.00000
Region-enriched R3: 3.588/0.00011

 0.958 - - - - - 0.958 Mlig455_000778 {REF} {Length: 348} {RNA1509_1140, RNA1509_2520} {RNA1310_112043, RNA1509_1140} {RNA1509_1140, RNA815_7257.7}
16. MligTC455_27853 40 0.83 Mlig455_069650

Neo: -

Age: -

 0.956 - - - - - 0.956 Mlig455_069650 {REF} {Length: 3238} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=130.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=115.7]; Integrase zinc binding domain [PF17921.3, score=72.1]; Integrase core domain [PF00665.28, score=50.6]; DDE superfamily endonuclease [PF13358.8, score=21.3]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=207, Expect=7e-60]} {RNA1509_28802} {RNA1310_131.1} {RNA815_52.1}
17. MligTC455_44239 43 0.9 Mlig455_002480

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_002480 {REF} {Length: 1329} {NoTransDecoderORF} {RNA1509_49118} {RNA1310_34083} {RNA815_11074.2}
18. MligTC455_53582 22 0.46 Mlig455_067135

Neo: -

Age: -

 ZAN 0.954 - - - - - 0.954 Mlig455_067135 {REF} {Length: 2659} {Human: ENSG00000146839, ZAN, zonadhesin (gene/pseudogene), [Score=68.2, Expect=4e-11]} {Mouse: ENSMUSG00000079173, Zan, zonadhesin, [Score=53.1, Expect=1e-06]} {RNA1310_113822} {RNA815_58009}
19. MligTC455_51462 70 1.46 Mlig455_031923

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.494

 0.95 - - - - - 0.950 Mlig455_031923 {REF} {Length: 3980} {Smed: dd_Smed_v6_9798_0_1, dd_Smed_v6_9798_0_1, [Score=109, Expect=1e-24]} {RNA1509_27160} {RNA1310_5219.1} {RNA815_1908}
20. MligTC455_54275 30 0.63 Mlig455_017654

Neo: -

Age: -

 CHRM5 0.95 - - - - - 0.950 Mlig455_017654 {REF} {Length: 2293} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=252.3]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=44.3]; Olfactory receptor [PF13853.8, score=21.1]} {Human: ENSG00000184984, CHRM5, cholinergic receptor muscarinic 5, [RH, Score=213, Expect=9e-61]} {Mouse: ENSMUSG00000046159, Chrm3, cholinergic receptor, muscarinic 3, cardiac, [Score=226, Expect=4e-65]} {Dmel: FBgn0000037, mAChR-A, muscarinic Acetylcholine Receptor, A-type, [RH, Score=214, Expect=1e-59]} {Celegans: WBGene00001519, gar-3, Muscarinic acetylcholine receptor gar-3, [RH, Score=217, Expect=4e-62]} {Smed: dd_Smed_v6_20043_0_1, dd_Smed_v6_20043_0_1, [RH, Score=221, Expect=4e-64]} {RNA1310_22334} {RNA815_30775}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA