M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_57405

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_57405 15 0.32 Mlig455_048279

Neo: -

Age: -

 Mlig455_048279 {REF} {Length: 259} {NoTransDecoderORF} {RNA1509_52163} {RNA1310_35227} {RNA815_50075}

Cumulative graph for MligTC455_57405

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.5 0.795 0.99975 1.00000
RegionR2 -0.608 0.795 0.99982 1.00000
RegionR3 1.199 0.795 0.99988 1.00000
RegionR4 1.427 0.795 0.99987 1.00000
RegionR5 1.827 0.795 0.99990 1.00000
RegionR6 0.484 0.795 0.99997 1.00000
RegionR7 -0.379 0.795 1.00000 1.00000
RegionR8 -1.449 0.795 0.99993 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.474 0.795 0.99992 1.00000
RegenerationR2 2.74 0.795 0.10128 0.50254
RegenerationR3 1.769 0.795 0.12362 0.54377
RegenerationR4 0.319 0.795 0.51268 0.87608
RegenerationR5 1.842 0.795 0.17378 0.60301
RegenerationR6 3.153 0.795 0.13013 0.44303
RegenerationBL -0.564 0.795 0.99997 1.00000
RegenerationTP 2.963 0.795 0.55391 0.93580


Genes with expression patterns similar to MligTC455_57405

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_57405 15 0.32 Mlig455_048279

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_048279 {REF} {Length: 259} {NoTransDecoderORF} {RNA1509_52163} {RNA1310_35227} {RNA815_50075}
2. MligTC455_21424 38 0.79 Mlig455_006171

Neo: -

Age: -

Regeneration-enriched BL: 6.602
Regeneration-enriched R2: 6.077

 ALKBH3 0.99 - - - 0.990 - - Mlig455_006171 {REF} {Length: 1406} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=97.0]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=108, Expect=3e-26]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=110, Expect=6e-27]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [Score=107, Expect=7e-26]}
3. MligTC455_21310 180 3.75 Mlig455_018649, Mlig455_018841, Mlig455_018852

Neo: -

Age: Up-Down-Down

 FOXJ3, TNR 0.986 - - - 0.986 - -

Mlig455_018649 {REF} {Length: 1053} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=120.9]} {Human: ENSG00000116147, TNR, tenascin R, [Score=102, Expect=8e-24]; ENSG00000120332, TNN, tenascin N, [Score=97.1, Expect=4e-22]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=99.8, Expect=4e-23]; ENSMUSG00000026725, Tnn, tenascin N, [Score=97.1, Expect=3e-22]} {Dmel: FBgn0050280, CG30280, [Score=91.3, Expect=2e-21]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=85.5, Expect=1e-18]} {RNA1310_137835} {RNA815_40596}

Mlig455_018841 {REF} {Length: 7655} {Pfam: Forkhead domain [PF00250.20, score=128.6]} {Human: ENSG00000198815, FOXJ3, forkhead box J3, [RH, Score=160, Expect=5e-42]} {Mouse: ENSMUSG00000032998, Foxj3, forkhead box J3, [RH, Score=159, Expect=7e-42]} {Dmel: FBgn0004567, slp2, sloppy paired 2, [Score=125, Expect=5e-31]} {Celegans: WBGene00001434, fkh-2, ForKHead transcription factor family, [Score=116, Expect=4e-29]} {Smed: dd_Smed_v6_12170_0_1, dd_Smed_v6_12170_0_1, [RH, Score=112, Expect=4e-26]} {RNA1509_27309} {RNA1310_20178, RNA1509_27309} {RNA1509_27309, RNA815_32223}

Mlig455_018852 {REF} {Length: 7660} {Pfam: Forkhead domain [PF00250.20, score=128.6]} {Human: ENSG00000198815, FOXJ3, forkhead box J3, [RH, Score=160, Expect=5e-42]} {Mouse: ENSMUSG00000032998, Foxj3, forkhead box J3, [RH, Score=159, Expect=7e-42]} {Dmel: FBgn0004567, slp2, sloppy paired 2, [Score=125, Expect=5e-31]} {Celegans: WBGene00001434, fkh-2, ForKHead transcription factor family, [Score=116, Expect=4e-29]} {Smed: dd_Smed_v6_12170_0_1, dd_Smed_v6_12170_0_1, [RH, Score=112, Expect=4e-26]} {RNA1509_27309} {RNA1310_20178} {RNA815_32223}
4. MligTC455_40308 21 0.44 Mlig455_047748

Neo: -

Age: -

 0.985 - - - 0.985 - - Mlig455_047748 {REF} {Length: 474} {NoTransDecoderORF}
5. MligTC455_52868 47 0.99 Mlig455_070407

Neo: -

Age: Down-Up-Up

 0.982 - - - 0.982 - - Mlig455_070407 {REF} {Length: 6247} {RNA1509_57987} {RNA1310_23302.1} {RNA815_10826}
6. MligTC455_49302 35 0.73 Mlig455_058893

Neo: -

Age: -

Region-enriched R2: 7.010/0.02859

 SALL3 0.976 - - - 0.976 - - Mlig455_058893 {REF} {Length: 4285} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=70.7]; C2H2-type zinc finger [PF13894.8, score=63.9]; Zinc-finger double domain [PF13465.8, score=55.3]; Zinc-finger of C2H2 type [PF12874.9, score=45.7]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=39.0]} {Human: ENSG00000263310, SALL3, spalt like transcription factor 3, [Score=92.4, Expect=3e-18]; ENSG00000256463, SALL3, spalt like transcription factor 3, [Score=92.4, Expect=3e-18]; ENSG00000277015, SALL3, spalt like transcription factor 3, [Score=92.4, Expect=3e-18]; ENSG00000101115, SALL4, spalt like transcription factor 4, [Score=91.7, Expect=5e-18]; ENSG00000103449, SALL1, spalt like transcription factor 1, [Score=90.1, Expect=1e-17]} {Mouse: ENSMUSG00000024565, Sall3, spalt like transcription factor 3, [Score=92.4, Expect=2e-18]; ENSMUSG00000027547, Sall4, spalt like transcription factor 4, [Score=92.0, Expect=2e-18]; ENSMUSG00000031665, Sall1, spalt like transcription factor 1, [Score=90.1, Expect=1e-17]} {Dmel: FBgn0261648, salm, spalt major, [RH, Score=97.4, Expect=4e-20]} {Celegans: WBGene00004773, sem-4, SEM-4 long form, [RH, Score=97.1, Expect=3e-20]} {Smed: dd_Smed_v6_14176_0_1, dd_Smed_v6_14176_0_1, [RH, Score=121, Expect=2e-28]} {RNA1310_43057} {RNA815_29425}
7. MligTC455_33537 17 0.36 Mlig455_046409

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_046409 {REF} {Length: 3043} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=38.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=113, Expect=7e-26]} {RNA1509_51609} {RNA1310_3461} {RNA815_16498}
8. MligTC455_33536 25 0.51 Mlig455_011640

Neo: -

Age: Up-Down-Down

 0.972 - - - - 0.972 - Mlig455_011640 {REF} {Length: 4212} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=35.5]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=110, Expect=3e-25]} {RNA1509_51609} {RNA1310_38193} {RNA815_16498}
9. MligTC455_04271 167 3.49 Mlig455_046505

Neo: -

Age: Up-Down-Down

 0.964 - - - - 0.964 - Mlig455_046505 {REF} {Length: 4508} {RNA1509_35152} {RNA1310_3240.1} {RNA815_13045}
10. MligTC455_15608 37 0.77 Mlig455_065097

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_065097 {REF} {Length: 714} {NoTransDecoderORF} {RNA1509_54815} {RNA1310_122782} {RNA815_2261.1}
11. MligTC455_17843 74 1.55 Mlig455_010069, Mlig455_063252, Mlig455_063277

Neo: -

Age: -

 0.953 - - - 0.953 - -

Mlig455_010069 {REF} {Length: 64} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_42489} {RNA1310_14879} {RNA815_7053}

Mlig455_063252 {REF} {Length: 64} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_42489} {RNA1310_14879} {RNA815_7053}

Mlig455_063277 {REF} {Length: 64} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_42489} {RNA1310_14879} {RNA815_7053}
12. MligTC455_39022 18 0.38 Mlig455_040588, Mlig455_062046, Mlig455_068792

Neo: -

Age: -

 0.953 - - - 0.953 - -

Mlig455_040588 {REF} {Length: 1473} {RNA1509_21391} {RNA1310_6366} {RNA815_11612}

Mlig455_062046 {REF} {Length: 802} {TRANSSPLICED} {RNA1509_21391} {RNA1310_6366} {RNA815_31706}

Mlig455_068792 {REF} {Length: 1535} {TRANSSPLICED} {RNA1509_21391} {RNA1310_6366} {RNA815_11612}
13. MligTC455_05649 35 0.72 Mlig455_008685

Neo: -

Age: -

Region-enriched R7: 5.623/0.00010

 0.95 - - - 0.950 - - Mlig455_008685 {REF} {Length: 2114} {NoTransDecoderORF} {RNA1509_31312} {RNA1310_88115} {RNA815_53142}
14. MligTC455_10696 15 0.32 Mlig455_001641

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_001641 {REF} {Length: 687} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_50300} {RNA1310_10225.1}
15. MligTC455_11418 5 0.1 Mlig455_008063

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_008063 {REF} {Length: 163} {NoTransDecoderORF}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA