M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_00445

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_00445 10 0.20 Mlig455_050061

Neo: -

Age: -

 Mlig455_050061 {REF} {Length: 1541} {Pfam: Glycine rich protein [PF12810.9, score=23.6]} {RNA1310_95807} {RNA815_44382}

Cumulative graph for MligTC455_00445

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_00445

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_00445 10 0.2 Mlig455_050061

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_050061 {REF} {Length: 1541} {Pfam: Glycine rich protein [PF12810.9, score=23.6]} {RNA1310_95807} {RNA815_44382}
2. MligTC455_54767 10 0.2 Mlig455_039385

Neo: -

Age: -

 0.99 - - - - 0.990 - Mlig455_039385 {REF} {Length: 214} {NoTransDecoderORF}
3. MligTC455_57510 15 0.31 Mlig455_031579

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_031579 {REF} {Length: 222} {NoTransDecoderORF}
4. MligTC455_17503 10 0.2 Mlig455_021004

Neo: -

Age: -

 0.983 - - - - 0.983 - Mlig455_021004 {REF} {Length: 2867} {Pfam: Glycine rich protein [PF12810.9, score=29.5]} {RNA1509_16464} {RNA1310_129878} {RNA815_39542}
5. MligTC455_24861 117 2.44 Mlig455_019572

Neo: -

Age: -

Region-enriched R8: 4.245/0.00630

 FREM1 0.98 - - - - 0.980 - Mlig455_019572 {REF} {Length: 8695} {Pfam: Cadherin-like [PF16184.7, score=328.8]; Frem protein N-terminal domain [PF19309.1, score=92.3]; Lectin C-type domain [PF00059.23, score=31.6]} {Human: ENSG00000164946, FREM1, FRAS1 related extracellular matrix 1, [RH, Score=370, Expect=2e-102]} {Mouse: ENSMUSG00000059049, Frem1, Fras1 related extracellular matrix protein 1, [RH, Score=381, Expect=3e-106]} {Smed: dd_Smed_v6_5187_0_1, dd_Smed_v6_5187_0_1, [RH, Score=508, Expect=4e-147]} {RNA1509_8234} {RNA1310_595.1} {RNA815_322}
6. MligTC455_16525 20 0.41 Mlig455_051737

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_051737 {REF} {Length: 196} {NoTransDecoderORF} {RNA1310_48719} {RNA815_25764}
7. MligTC455_19348 12 0.25 Mlig455_054216

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_054216 {REF} {Length: 820} {Pfam: WSC domain [PF01822.21, score=51.3]; PAN domain [PF00024.28, score=26.4]} {RNA1509_29094} {RNA1310_84436} {RNA815_44155}
8. MligTC455_49777 9 0.2 Mlig455_028165

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_028165 {REF} {Length: 2438} {RNA1310_48926} {RNA815_27644}
9. MligTC455_09891 11 0.24 Mlig455_068389

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_068389 {REF} {Length: 1794} {Pfam: LicD family [PF04991.15, score=47.2]} {Smed: dd_Smed_v6_7880_0_1, dd_Smed_v6_7880_0_1, [RH, Score=216, Expect=7e-67]} {RNA1310_24211} {RNA815_29989}
10. MligTC455_12113 72 1.5 Mlig455_001687, Mlig455_071131

Neo: -

Age: -

 0.973 - - - - 0.973 -

Mlig455_001687 {REF} {Length: 809} {RNA1310_67367} {RNA815_37220}

Mlig455_071131 {REF} {Length: 452} {RNA1509_45496} {RNA1310_67367} {RNA815_37220}
11. MligTC455_41824 194 4.03 Mlig455_048229

Neo: -

Age: -

Region-enriched R2: 3.040/0.03860

 0.973 - - - - 0.973 - Mlig455_048229 {REF} {Length: 769} {RNA1509_49797} {RNA1310_60350, RNA1509_49797} {RNA1509_49797, RNA815_30999}
12. MligTC455_42917 35 0.73 Mlig455_051334

Neo: -

Age: -

Region-enriched R2: 5.166/0.02531

 0.973 - - - - 0.973 - Mlig455_051334 {REF} {Length: 791} {RNA815_44512}
13. MligTC455_46942 372 7.76 Mlig455_002919

Neo: -

Age: -

Region-enriched R2: 3.849/0.00000
Region-enriched R7: 2.306/0.04215

 AVL9 0.973 - - - - 0.973 - Mlig455_002919 {REF} {Length: 4630} {Pfam: Transport protein Avl9 [PF09794.11, score=355.8]; DENN domain-containing protein 11 [PF09804.11, score=30.1]; Docking domain of Afi1 for Arf3 in vesicle trafficking [PF07792.14, score=22.1]; Stabilization of polarity axis [PF08616.12, score=20.1]} {Human: ENSG00000105778, AVL9, AVL9 cell migration associated, [RH, Score=347, Expect=3e-110]} {Mouse: ENSMUSG00000029787, Avl9, AVL9 cell migration associated, [RH, Score=347, Expect=3e-110]} {Dmel: FBgn0030499, CG11178, [Score=270, Expect=8e-81]} {Celegans: WBGene00020822, T26A5.6, [RH, Score=193, Expect=5e-54]} {Smed: dd_Smed_v6_6271_0_1, dd_Smed_v6_6271_0_1, [RH, Score=216, Expect=3e-61]} {RNA1509_21868} {RNA1310_21783} {RNA815_17887}
14. MligTC455_40744 13 0.26 Mlig455_031038

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_031038 {REF} {Length: 992} {NoTransDecoderORF} {RNA1509_38967} {RNA1310_56807} {RNA815_8805}
15. MligTC455_17239 98 2.03 Mlig455_015498

Neo: -

Age: Down-Up-Down

 0.968 - - - - 0.968 - Mlig455_015498 {REF} {Length: 3864} {Pfam: Universal stress protein family [PF00582.28, score=92.4]} {Smed: dd_Smed_v6_402_1_1, dd_Smed_v6_402_1_1, [Score=120, Expect=2e-35]} {RNA1509_53714} {RNA1310_39856} {RNA815_18155.1}
16. MligTC455_32056 153 3.19 Mlig455_016474, Mlig455_037543, Mlig455_037710, Mlig455_042291, Mlig455_042433, Mlig455_052916, Mlig455_054664, Mlig455_055174, Mlig455_061418, Mlig455_063452, Mlig455_070550

Neo: -

Age: -

Region-enriched R5: 4.939/0.00001

 0.968 - - - - 0.968 -

Mlig455_016474 {REF} {Length: 3351} {RNA1509_17965} {RNA1310_21295} {RNA815_18160}

Mlig455_037543 {REF} {Length: 954} {Pfam: Replication protein A OB domain [PF16900.7, score=41.0]; OB-fold nucleic acid binding domain [PF01336.27, score=24.8]; Telomeric single stranded DNA binding POT1/CDC13 [PF02765.19, score=22.4]} {RNA1509_17965} {RNA1310_21295}

Mlig455_037710 {REF} {Length: 356} {Pfam: OB-fold nucleic acid binding domain [PF01336.27, score=41.3]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=58.5, Expect=3e-11]} {RNA1509_30354} {RNA1310_21295}

Mlig455_042291 {REF} {Length: 1135} {Pfam: OB-fold nucleic acid binding domain [PF01336.27, score=62.2]; Replication protein A OB domain [PF16900.7, score=48.7]; Telomeric single stranded DNA binding POT1/CDC13 [PF02765.19, score=25.4]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=88.2, Expect=3e-19]} {RNA1509_17965} {RNA1310_21295}

Mlig455_042433 {REF} {Length: 3644} {RNA1509_17965} {RNA1310_21295} {RNA815_20255}

Mlig455_052916 {REF} {Length: 3350} {RNA1509_17965} {RNA1310_21295} {RNA815_18160}

Mlig455_054664 {REF} {Length: 2963} {RNA1509_17965} {RNA1310_21295}

Mlig455_055174 {REF} {Length: 3345} {RNA1509_17965} {RNA1310_21295} {RNA815_18160}

Mlig455_061418 {REF} {Length: 3439} {Pfam: OB-fold nucleic acid binding domain [PF01336.27, score=62.2]; Replication protein A OB domain [PF16900.7, score=48.7]; Telomeric single stranded DNA binding POT1/CDC13 [PF02765.19, score=25.4]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=88.2, Expect=3e-19]} {RNA1509_17965, RNA1509_42467} {RNA1310_21295, RNA1509_17965, RNA1509_42467} {RNA1509_17965, RNA1509_42467, RNA815_18160}

Mlig455_063452 {REF} {Length: 1038} {Pfam: OB-fold nucleic acid binding domain [PF01336.27, score=62.2]; Replication protein A OB domain [PF16900.7, score=48.7]; Telomeric single stranded DNA binding POT1/CDC13 [PF02765.19, score=25.4]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=88.2, Expect=3e-19]} {RNA1509_30354} {RNA1310_21295}

Mlig455_070550 {REF} {Length: 1394} {Pfam: OB-fold nucleic acid binding domain [PF01336.27, score=62.2]; Replication protein A OB domain [PF16900.7, score=48.7]; Telomeric single stranded DNA binding POT1/CDC13 [PF02765.19, score=25.4]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=88.2, Expect=3e-19]} {RNA1509_17965} {RNA1310_21295}
17. MligTC455_13850 16 0.32 Mlig455_054006

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_054006 {REF} {Length: 4582} {Pfam: Glycine rich protein [PF12810.9, score=23.6]} {RNA1509_27849} {RNA1310_5710.1} {RNA815_6291.1}
18. MligTC455_29604 264 5.49 Mlig455_070200

Neo: -

Age: Down-Up-Down

 0.966 - - - - 0.966 - Mlig455_070200 {REF} {Length: 1448} {Pfam: Dynein light chain type 1 [PF01221.20, score=60.5]; EF-hand domain pair [PF13499.8, score=26.1]; EF hand [PF00036.34, score=24.6]} {Smed: dd_Smed_v6_6707_0_3, dd_Smed_v6_6707_0_3, [Score=127, Expect=1e-37]} {RNA1509_53012} {RNA1310_43825} {RNA815_11614}
19. MligTC455_37299 18 0.37 Mlig455_064096

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_064096 {REF} {Length: 2004} {RNA1509_17085, RNA1509_26852, RNA1509_32701} {RNA1310_33260, RNA1509_17085, RNA1509_26852, RNA1509_32701} {RNA1509_17085, RNA1509_26852, RNA1509_32701, RNA815_22090}
20. MligTC455_47997 36 0.75 Mlig455_053262, Mlig455_065031

Neo: -

Age: -

 0.961 - - - - 0.961 -

Mlig455_053262 {REF} {Length: 927} {RNA1310_55950} {RNA815_42062.2}

Mlig455_065031 {REF} {Length: 926} {RNA1310_55950} {RNA815_42062.2}
21. MligTC455_32202 47 0.98 Mlig455_026643

Neo: -

Age: Up-Down-Up

 0.959 - - - - 0.959 - Mlig455_026643 {REF} {Length: 3133} {Pfam: CENP-B N-terminal DNA-binding domain [PF04218.15, score=24.4]} {RNA1310_5930} {RNA815_21829}
22. MligTC455_53638 2333 48.59 Mlig455_051726

Neo: -

Age: Down-Up-Up

Region-enriched R8: 2.691/0.00000
Region-enriched R7: 2.024/0.00000
Region-enriched R2: 1.504/0.00387

Regeneration-downregulated BL: -2.953

Regeneration-depleted BL: -2.953

 0.959 - - - - 0.959 - Mlig455_051726 {REF} {Length: 657} {RNA1509_6981} {RNA1310_49321} {RNA815_24877}
23. MligTC455_12304 42 0.87 Mlig455_070558

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_070558 {REF} {Length: 1968} {Pfam: Integrase core domain [PF00665.28, score=29.3]} {Smed: dd_Smed_v6_11155_0_6, dd_Smed_v6_11155_0_6, [Score=56.2, Expect=6e-11]} {RNA1509_21400} {RNA1310_37574} {RNA815_2733.1}
24. MligTC455_49973 21 0.43 Mlig455_036304

Neo: -

Age: Down-Up-Down

 0.958 - - - - 0.958 - Mlig455_036304 {REF} {Length: 2233} {TRANSSPLICED} {Pfam: SEA domain [PF01390.22, score=24.5]} {RNA1509_11603} {RNA1310_19429.1} {RNA815_46314}
25. MligTC455_49337 141 2.94 Mlig455_004942

Neo: -

Age: -

Region-enriched R2: 4.260/0.00004
Region-enriched R7: 4.073/0.00000
Region-enriched R6: 2.891/0.00737

 CA7 0.957 - - - - 0.957 - Mlig455_004942 {REF} {Length: 2623} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=206.7]} {Human: ENSG00000168748, CA7, carbonic anhydrase 7, [Score=157, Expect=2e-45]} {Mouse: ENSMUSG00000031883, Car7, carbonic anhydrase 7, [Score=156, Expect=2e-45]} {Dmel: FBgn0027844, CAH1, Carbonic anhydrase 1, [Score=129, Expect=8e-35]} {Celegans: WBGene00000283, cah-5, Putative carbonic anhydrase 5, [Score=89.4, Expect=4e-20]} {Smed: dd_Smed_v6_11683_0_1, dd_Smed_v6_11683_0_1, [Score=160, Expect=1e-46]} {RNA1509_43765} {RNA1310_22186} {RNA815_18428}
26. MligTC455_39231 20 0.41 Mlig455_067555

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_067555 {REF} {Length: 2125} {Celegans: WBGene00016348, C33E10.6, [Score=111, Expect=2e-28]} {Smed: dd_Smed_v6_3268_0_3, dd_Smed_v6_3268_0_3, [Score=103, Expect=4e-28]} {RNA1509_47487} {RNA1310_8325.1} {RNA815_24633}
27. MligTC455_48860 266 5.54 Mlig455_053885, Mlig455_055410

Neo: -

Age: Down-Up-Down

 0.956 - - - - 0.956 -

Mlig455_053885 {REF} {Length: 2736} {Pfam: Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=40.8]; SH3 domain [PF00018.30, score=20.7]} {Smed: dd_Smed_v6_834_0_1, dd_Smed_v6_834_0_1, [Score=57.0, Expect=1e-08]} {RNA1509_11823} {RNA1310_16283, RNA1509_11823} {RNA1509_11823, RNA815_6206.1}

Mlig455_055410 {REF} {Length: 2712} {Pfam: Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=40.8]; SH3 domain [PF00018.30, score=20.1]; Autophagy protein 16 (ATG16) [PF08614.13, score=20.0]} {Smed: dd_Smed_v6_834_0_1, dd_Smed_v6_834_0_1, [Score=56.6, Expect=2e-08]} {RNA1509_54914} {RNA1310_16283, RNA1509_54914} {RNA1509_54914, RNA815_6206.1}
28. MligTC455_09805 15 0.31 Mlig455_035798

Neo: -

Age: -

 GABBR2 0.955 - - - - 0.955 - Mlig455_035798 {REF} {Length: 3066} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=153.8]; Receptor family ligand binding region [PF01094.30, score=121.9]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=247, Expect=1e-69]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=245, Expect=4e-69]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=234, Expect=1e-64]} {Celegans: WBGene00021528, gbb-1, GABA B receptor subunit; GABAB1 receptor subunit, [Score=209, Expect=6e-57]} {Smed: dd_Smed_v6_51663_0_1, dd_Smed_v6_51663_0_1, [Score=132, Expect=2e-34]} {RNA1509_13394} {RNA1310_65839} {RNA815_47481}
29. MligTC455_14329 326 6.78 Mlig455_038755

Neo: -

Age: logFC(26M/2M)=2.873

 CYP2U1 0.952 - - - - 0.952 - Mlig455_038755 {REF} {Length: 2107} {Pfam: Cytochrome P450 [PF00067.24, score=302.2]} {Human: ENSG00000155016, CYP2U1, cytochrome P450 family 2 subfamily U member 1, [Score=211, Expect=2e-61]; ENSG00000108242, CYP2C18, cytochrome P450 family 2 subfamily C member 18, [Score=204, Expect=2e-59]; ENSG00000138115, CYP2C8, cytochrome P450 family 2 subfamily C member 8, [Score=202, Expect=1e-58]} {Mouse: ENSMUSG00000032808, Cyp2c38, cytochrome P450, family 2, subfamily c, polypeptide 38, [Score=213, Expect=1e-62]; ENSMUSG00000025003, Cyp2c39, cytochrome P450, family 2, subfamily c, polypeptide 39, [Score=213, Expect=9e-63]; ENSMUSG00000027983, Cyp2u1, cytochrome P450, family 2, subfamily u, polypeptide 1, [Score=209, Expect=7e-61]; ENSMUSG00000116063, Cyp2u1, cytochrome P450, family 2, subfamily u, polypeptide 1, [Score=209, Expect=7e-61]; ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [Score=208, Expect=8e-61]; ENSMUSG00000052974, Cyp2f2, cytochrome P450, family 2, subfamily f, polypeptide 2, [Score=204, Expect=1e-59]; ENSMUSG00000025002, Cyp2c55, cytochrome P450, family 2, subfamily c, polypeptide 55, [Score=204, Expect=1e-59]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=176, Expect=9e-49]} {Celegans: WBGene00016697, cyp-33C2, CYtochrome P450 family, [Score=206, Expect=1e-60]} {Smed: dd_Smed_v6_2083_0_1, dd_Smed_v6_2083_0_1, [Score=230, Expect=2e-69]} {RNA1509_33783} {RNA1310_2911.1, RNA1509_33783} {RNA1509_33783, RNA815_12179}
30. MligTC455_20476 29 0.61 Mlig455_009224

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_009224 {REF} {Length: 1688} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=38.1]} {Dmel: FBgn0035385, FMRFaR, FMRFamide Receptor, [Score=49.7, Expect=2e-06]} {RNA1310_19222} {RNA815_35367}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA