M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_54767

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_54767 10 0.20 Mlig455_039385

Neo: -

Age: -

 Mlig455_039385 {REF} {Length: 214} {NoTransDecoderORF}

Cumulative graph for MligTC455_54767

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_54767

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_54767 10 0.2 Mlig455_039385

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_039385 {REF} {Length: 214} {NoTransDecoderORF}
2. MligTC455_00445 10 0.2 Mlig455_050061

Neo: -

Age: -

 0.99 - - - - 0.990 - Mlig455_050061 {REF} {Length: 1541} {Pfam: Glycine rich protein [PF12810.9, score=23.6]} {RNA1310_95807} {RNA815_44382}
3. MligTC455_24861 117 2.44 Mlig455_019572

Neo: -

Age: -

Region-enriched R8: 4.245/0.00630

 FREM1 0.985 - - - - 0.985 - Mlig455_019572 {REF} {Length: 8695} {Pfam: Cadherin-like [PF16184.7, score=328.8]; Frem protein N-terminal domain [PF19309.1, score=92.3]; Lectin C-type domain [PF00059.23, score=31.6]} {Human: ENSG00000164946, FREM1, FRAS1 related extracellular matrix 1, [RH, Score=370, Expect=2e-102]} {Mouse: ENSMUSG00000059049, Frem1, Fras1 related extracellular matrix protein 1, [RH, Score=381, Expect=3e-106]} {Smed: dd_Smed_v6_5187_0_1, dd_Smed_v6_5187_0_1, [RH, Score=508, Expect=4e-147]} {RNA1509_8234} {RNA1310_595.1} {RNA815_322}
4. MligTC455_49973 21 0.43 Mlig455_036304

Neo: -

Age: Down-Up-Down

 0.977 - - - - 0.977 - Mlig455_036304 {REF} {Length: 2233} {TRANSSPLICED} {Pfam: SEA domain [PF01390.22, score=24.5]} {RNA1509_11603} {RNA1310_19429.1} {RNA815_46314}
5. MligTC455_46048 31 0.64 Mlig455_060908

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_060908 {REF} {Length: 4385} {RNA1509_22124} {RNA1310_13120} {RNA815_10355}
6. MligTC455_37299 18 0.37 Mlig455_064096

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_064096 {REF} {Length: 2004} {RNA1509_17085, RNA1509_26852, RNA1509_32701} {RNA1310_33260, RNA1509_17085, RNA1509_26852, RNA1509_32701} {RNA1509_17085, RNA1509_26852, RNA1509_32701, RNA815_22090}
7. MligTC455_46942 372 7.76 Mlig455_002919

Neo: -

Age: -

Region-enriched R2: 3.849/0.00000
Region-enriched R7: 2.306/0.04215

 AVL9 0.974 - - - - 0.974 - Mlig455_002919 {REF} {Length: 4630} {Pfam: Transport protein Avl9 [PF09794.11, score=355.8]; DENN domain-containing protein 11 [PF09804.11, score=30.1]; Docking domain of Afi1 for Arf3 in vesicle trafficking [PF07792.14, score=22.1]; Stabilization of polarity axis [PF08616.12, score=20.1]} {Human: ENSG00000105778, AVL9, AVL9 cell migration associated, [RH, Score=347, Expect=3e-110]} {Mouse: ENSMUSG00000029787, Avl9, AVL9 cell migration associated, [RH, Score=347, Expect=3e-110]} {Dmel: FBgn0030499, CG11178, [Score=270, Expect=8e-81]} {Celegans: WBGene00020822, T26A5.6, [RH, Score=193, Expect=5e-54]} {Smed: dd_Smed_v6_6271_0_1, dd_Smed_v6_6271_0_1, [RH, Score=216, Expect=3e-61]} {RNA1509_21868} {RNA1310_21783} {RNA815_17887}
8. MligTC455_14329 326 6.78 Mlig455_038755

Neo: -

Age: logFC(26M/2M)=2.873

 CYP2U1 0.967 - - - - 0.967 - Mlig455_038755 {REF} {Length: 2107} {Pfam: Cytochrome P450 [PF00067.24, score=302.2]} {Human: ENSG00000155016, CYP2U1, cytochrome P450 family 2 subfamily U member 1, [Score=211, Expect=2e-61]; ENSG00000108242, CYP2C18, cytochrome P450 family 2 subfamily C member 18, [Score=204, Expect=2e-59]; ENSG00000138115, CYP2C8, cytochrome P450 family 2 subfamily C member 8, [Score=202, Expect=1e-58]} {Mouse: ENSMUSG00000032808, Cyp2c38, cytochrome P450, family 2, subfamily c, polypeptide 38, [Score=213, Expect=1e-62]; ENSMUSG00000025003, Cyp2c39, cytochrome P450, family 2, subfamily c, polypeptide 39, [Score=213, Expect=9e-63]; ENSMUSG00000027983, Cyp2u1, cytochrome P450, family 2, subfamily u, polypeptide 1, [Score=209, Expect=7e-61]; ENSMUSG00000116063, Cyp2u1, cytochrome P450, family 2, subfamily u, polypeptide 1, [Score=209, Expect=7e-61]; ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [Score=208, Expect=8e-61]; ENSMUSG00000052974, Cyp2f2, cytochrome P450, family 2, subfamily f, polypeptide 2, [Score=204, Expect=1e-59]; ENSMUSG00000025002, Cyp2c55, cytochrome P450, family 2, subfamily c, polypeptide 55, [Score=204, Expect=1e-59]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=176, Expect=9e-49]} {Celegans: WBGene00016697, cyp-33C2, CYtochrome P450 family, [Score=206, Expect=1e-60]} {Smed: dd_Smed_v6_2083_0_1, dd_Smed_v6_2083_0_1, [Score=230, Expect=2e-69]} {RNA1509_33783} {RNA1310_2911.1, RNA1509_33783} {RNA1509_33783, RNA815_12179}
9. MligTC455_10143 16 0.33 Mlig455_027554

Neo: -

Age: -

 FLNA 0.963 - - - - 0.963 - Mlig455_027554 {REF} {Length: 2762} {Pfam: Calponin homology (CH) domain [PF00307.33, score=48.0]; Filamin/ABP280 repeat [PF00630.21, score=32.0]} {Human: ENSG00000196924, FLNA, filamin A, [Score=55.5, Expect=4e-07]} {Celegans: WBGene00020530, T15B12.1, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_12996_0_1, dd_Smed_v6_12996_0_1, [Score=48.9, Expect=1e-05]} {RNA1310_59993} {RNA815_50539}
10. MligTC455_12304 42 0.87 Mlig455_070558

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_070558 {REF} {Length: 1968} {Pfam: Integrase core domain [PF00665.28, score=29.3]} {Smed: dd_Smed_v6_11155_0_6, dd_Smed_v6_11155_0_6, [Score=56.2, Expect=6e-11]} {RNA1509_21400} {RNA1310_37574} {RNA815_2733.1}
11. MligTC455_57510 15 0.31 Mlig455_031579

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_031579 {REF} {Length: 222} {NoTransDecoderORF}
12. MligTC455_31539 62 1.28 Mlig455_068584

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.571

 KIDINS220 0.96 - - - - 0.960 - Mlig455_068584 {REF} {Length: 4294} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=85.4]; Ankyrin repeats (many copies) [PF13637.8, score=56.6]; Ankyrin repeats (many copies) [PF13857.8, score=49.0]; Mab-21 protein [PF03281.16, score=40.8]; Ankyrin repeat [PF00023.32, score=32.6]; Ankyrin repeat [PF13606.8, score=31.2]} {Human: ENSG00000134313, KIDINS220, kinase D interacting substrate 220, [Score=82.8, Expect=4e-15]; ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=79.0, Expect=6e-14]} {Mouse: ENSMUSG00000036333, Kidins220, kinase D-interacting substrate 220, [Score=78.6, Expect=6e-14]; ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=77.0, Expect=2e-13]; ENSMUSG00000031529, Tnks, tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase, [Score=76.6, Expect=2e-13]} {Dmel: FBgn0039590, CG10011, [Score=77.4, Expect=9e-14]} {Celegans: WBGene00013835, mlt-4, Molting protein MLT-4, [Score=74.3, Expect=3e-13]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=78.6, Expect=2e-14]} {RNA1509_31515} {RNA1310_805.1} {RNA815_431.1}
13. MligTC455_47997 36 0.75 Mlig455_053262, Mlig455_065031

Neo: -

Age: -

 0.96 - - - - 0.960 -

Mlig455_053262 {REF} {Length: 927} {RNA1310_55950} {RNA815_42062.2}

Mlig455_065031 {REF} {Length: 926} {RNA1310_55950} {RNA815_42062.2}
14. MligTC455_30893 107 2.23 Mlig455_066036

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_066036 {REF} {Length: 4220} {Pfam: HEPN domain [PF05168.16, score=30.8]} {RNA1509_8662} {RNA1310_4972} {RNA815_1384}
15. MligTC455_16525 20 0.41 Mlig455_051737

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_051737 {REF} {Length: 196} {NoTransDecoderORF} {RNA1310_48719} {RNA815_25764}
16. MligTC455_16246 45 0.95 Mlig455_036572

Neo: -

Age: Down-Up-Down

 0.954 - - - - 0.954 - Mlig455_036572 {REF} {Length: 810} {RNA1310_54790} {RNA815_37149}
17. MligTC455_17239 98 2.03 Mlig455_015498

Neo: -

Age: Down-Up-Down

 0.954 - - - - 0.954 - Mlig455_015498 {REF} {Length: 3864} {Pfam: Universal stress protein family [PF00582.28, score=92.4]} {Smed: dd_Smed_v6_402_1_1, dd_Smed_v6_402_1_1, [Score=120, Expect=2e-35]} {RNA1509_53714} {RNA1310_39856} {RNA815_18155.1}
18. MligTC455_19348 12 0.25 Mlig455_054216

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_054216 {REF} {Length: 820} {Pfam: WSC domain [PF01822.21, score=51.3]; PAN domain [PF00024.28, score=26.4]} {RNA1509_29094} {RNA1310_84436} {RNA815_44155}
19. MligTC455_42917 35 0.73 Mlig455_051334

Neo: -

Age: -

Region-enriched R2: 5.166/0.02531

 0.954 - - - - 0.954 - Mlig455_051334 {REF} {Length: 791} {RNA815_44512}
20. MligTC455_29604 264 5.49 Mlig455_070200

Neo: -

Age: Down-Up-Down

 0.952 - - - - 0.952 - Mlig455_070200 {REF} {Length: 1448} {Pfam: Dynein light chain type 1 [PF01221.20, score=60.5]; EF-hand domain pair [PF13499.8, score=26.1]; EF hand [PF00036.34, score=24.6]} {Smed: dd_Smed_v6_6707_0_3, dd_Smed_v6_6707_0_3, [Score=127, Expect=1e-37]} {RNA1509_53012} {RNA1310_43825} {RNA815_11614}
21. MligTC455_13850 16 0.32 Mlig455_054006

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_054006 {REF} {Length: 4582} {Pfam: Glycine rich protein [PF12810.9, score=23.6]} {RNA1509_27849} {RNA1310_5710.1} {RNA815_6291.1}
22. MligTC455_14426 7 0.14 Mlig455_004014

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_004014 {REF} {Length: 1248} {NoTransDecoderORF} {RNA1509_28689} {RNA1310_45336} {RNA815_53932}
23. MligTC455_52861 31 0.64 Mlig455_049513

Neo: -

Age: -

 GNAO1 0.95 - - - - 0.950 - Mlig455_049513 {REF} {Length: 3228} {Pfam: G-protein alpha subunit [PF00503.22, score=252.5]; ADP-ribosylation factor family [PF00025.23, score=43.6]; Rad17 P-loop domain [PF03215.17, score=22.1]; AAA ATPase domain [PF13191.8, score=19.2]} {Human: ENSG00000087258, GNAO1, G protein subunit alpha o1, [Score=152, Expect=4e-40]; ENSG00000114353, GNAI2, G protein subunit alpha i2, [Score=147, Expect=2e-38]} {Mouse: ENSMUSG00000032562, Gnai2, guanine nucleotide binding protein (G protein), alpha inhibiting 2, [Score=149, Expect=2e-39]; ENSMUSG00000031748, Gnao1, guanine nucleotide binding protein, alpha O, [Score=149, Expect=2e-39]; ENSMUSG00000057614, Gnai1, guanine nucleotide binding protein (G protein), alpha inhibiting 1, [Score=143, Expect=4e-37]; ENSMUSG00000000001, Gnai3, guanine nucleotide binding protein (G protein), alpha inhibiting 3, [Score=142, Expect=1e-36]} {Dmel: FBgn0001104, Galphai, G protein alpha i subunit, [Score=150, Expect=1e-39]} {Celegans: WBGene00001677, gpa-15, Guanine nucleotide-binding protein alpha-15 subunit, [Score=156, Expect=4e-42]} {Smed: dd_Smed_v6_22522_0_2, dd_Smed_v6_22522_0_2, [RH, Score=231, Expect=9e-69]} {RNA1509_23459} {RNA1310_51930} {RNA815_22610}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA