M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_00532

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_00532 2 0.04 Mlig455_014540

Neo: -

Age: -

 Mlig455_014540 {REF} {Length: 58} {NoTransDecoderORF}

Cumulative graph for MligTC455_00532

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_00532

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_00532 2 0.04 Mlig455_014540

Neo: -

Age: -

 1 - - - - - 1.000 Mlig455_014540 {REF} {Length: 58} {NoTransDecoderORF}
2. MligTC455_23045 15 0.32 Mlig455_010924

Neo: -

Age: -

 FERD3L 0.997 - - - - - 0.997 Mlig455_010924 {REF} {Length: 1552} {TRANSSPLICED} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=39.0]} {Human: ENSG00000146618, FERD3L, Fer3 like bHLH transcription factor, [Score=77.8, Expect=5e-17]} {Mouse: ENSMUSG00000046518, Ferd3l, Fer3 like bHLH transcription factor, [Score=80.1, Expect=4e-18]} {Dmel: FBgn0037937, Fer3, 48 related 3, [Score=65.1, Expect=2e-12]} {Celegans: WBGene00003018, lin-32, [Score=49.7, Expect=2e-07]} {Smed: dd_Smed_v6_8096_0_1, dd_Smed_v6_8096_0_1, [Score=75.5, Expect=3e-16]} {RNA1310_121570}
3. MligTC455_09484 32 0.67 Mlig455_007982

Neo: -

Age: Up-Down-Down

 0.985 - - - - - 0.985 Mlig455_007982 {REF} {Length: 2332} {Pfam: Mab-21 protein [PF03281.16, score=30.7]} {RNA1509_45347} {RNA1310_12573.1} {RNA815_23121}
4. MligTC455_16191 26 0.54 Mlig455_053781

Neo: -

Age: -

 0.978 - - - - - 0.978 Mlig455_053781 {REF} {Length: 1827} {RNA1310_72742}
5. MligTC455_01757 9 0.19 Mlig455_051452

Neo: -

Age: -

 0.973 - - - - - 0.973 Mlig455_051452 {REF} {Length: 298} {NoTransDecoderORF} {RNA1310_58092} {RNA815_50705}
6. MligTC455_29342 150 3.13 Mlig455_025176, Mlig455_025188

Neo: -

Age: Up-Down-Up

Region-enriched R2: 4.014/0.03070

 0.968 - - - - - 0.968

Mlig455_025176 {REF} {Length: 2991} {RNA1509_18735} {RNA1310_76847} {RNA815_13499.1}

Mlig455_025188 {REF} {Length: 2991} {RNA1509_18735} {RNA1310_76847} {RNA815_13499.1}
7. MligTC455_39273 5 0.1 Mlig455_045504

Neo: -

Age: -

 0.963 - - - - - 0.963 Mlig455_045504 {REF} {Length: 1320} {RNA1310_84541}
8. MligTC455_29866 70 1.46 Mlig455_008787, Mlig455_068946

Neo: Irradiation

Age: Up-Down-Down

 MSH6 0.962 - - - - - 0.962

Mlig455_008787 {REF} {Length: 10819} {TRANSSPLICED} {Pfam: MutS domain I [PF01624.22, score=121.8]; MutS domain III [PF05192.20, score=79.3]; PWWP domain [PF00855.19, score=51.3]; MutS domain II [PF05188.19, score=27.8]} {Human: ENSG00000116062, MSH6, mutS homolog 6, [Score=544, Expect=2e-177]} {Mouse: ENSMUSG00000005370, Msh6, mutS homolog 6, [Score=563, Expect=0.0]} {Dmel: FBgn0036486, Msh6, [Score=417, Expect=2e-128]} {Celegans: WBGene00003422, msh-6, MSH (MutS Homolog) family, [Score=409, Expect=2e-125]} {Smed: dd_Smed_v6_15463_0_2, dd_Smed_v6_15463_0_2, [Score=466, Expect=8e-150]} {RNA1509_2552, RNA1509_40096} {RNA1310_55.1, RNA1509_40096} {RNA1509_40096, RNA815_1085}

Mlig455_068946 {REF} {Length: 697} {Pfam: Integrase core domain [PF00665.28, score=38.6]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=126, Expect=2e-34]} {RNA1509_2552} {RNA1310_55.1} {RNA815_1085}
9. MligTC455_11648 38 0.8 Mlig455_031073

Neo: Irradiation

Age: -

Region-enriched R5: 3.267/0.03926

 0.955 - - - - - 0.955 Mlig455_031073 {REF} {Length: 1035} {Mouse: ENSMUSG00000070425, Xntrpc, Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough, [Score=76.6, Expect=3e-15]; ENSMUSG00000100254, Trpc2, transient receptor potential cation channel, subfamily C, member 2, [Score=74.3, Expect=2e-14]} {RNA1310_35920} {RNA815_60543}
10. MligTC455_56994 5 0.1 Mlig455_068902

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_068902 {REF} {Length: 460} {Mouse: ENSMUSG00000073490, Ifi207, interferon activated gene 207, [Score=50.8, Expect=2e-08]} {RNA1509_23358} {RNA1310_687} {RNA815_55072.1}
11. MligTC455_12690 30 0.62 Mlig455_013764

Neo: Irradiation

Age: Up-Down-Down

 0.952 - - - - - 0.952 Mlig455_013764 {REF} {Length: 1033} {RNA1310_40888}
12. MligTC455_00922 1 0.02 Mlig455_060839

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_060839 {REF} {Length: 488} {RNA1509_40661} {RNA1310_12689.2} {RNA815_44840}
13. MligTC455_01779 3 0.06 Mlig455_038139, Mlig455_039804

Neo: -

Age: -

 0.951 - - - - - 0.951

Mlig455_038139 {REF} {Length: 597} {Pfam: Interleukin-4 receptor alpha chain, N-terminal [PF09238.12, score=21.1]}

Mlig455_039804 {REF} {Length: 537} {Pfam: Interleukin-4 receptor alpha chain, N-terminal [PF09238.12, score=19.9]}
14. MligTC455_06994 9 0.18 Mlig455_019650

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_019650 {REF} {Length: 1165} {TRANSSPLICED} {RNA1310_29294} {RNA815_25557}
15. MligTC455_06995 7 0.15 Mlig455_070826

Neo: -

Age: Up-Down-Down

 0.951 - - - - - 0.951 Mlig455_070826 {REF} {Length: 1159} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF 659) [PF04937.17, score=40.5]} {Celegans: WBGene00015662, C10A4.1, [Score=69.3, Expect=2e-13]} {RNA1310_29294} {RNA815_25557}
16. MligTC455_07545 14 0.29 Mlig455_001083

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_001083 {REF} {Length: 859} {NoTransDecoderORF} {RNA1509_51478} {RNA1310_121350} {RNA815_4833.2}
17. MligTC455_38670 7 0.15 Mlig455_006879

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_006879 {REF} {Length: 795} {RNA1509_50839} {RNA1310_131129} {RNA815_18706.1}
18. MligTC455_41049 9 0.18 Mlig455_037417

Neo: -

Age: -

 CHRNA7 0.951 - - - - - 0.951 Mlig455_037417 {REF} {Length: 2364} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=78.3]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=68.2]} {Human: ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=89.0, Expect=6e-18]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=88.6, Expect=9e-18]; ENSG00000166664, CHRFAM7A, CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, [Score=88.2, Expect=2e-18]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=88.2, Expect=9e-18]; ENSG00000275917, CHRFAM7A, CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, [Score=87.8, Expect=3e-18]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=87.4, Expect=1e-17]; ENSMUSG00000027950, Chrnb2, cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal), [Score=83.6, Expect=4e-16]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=91.7, Expect=5e-19]} {Celegans: WBGene00001133, eat-2, Neuronal acetylcholine receptor subunit eat-2, [Score=87.4, Expect=6e-18]} {Smed: dd_Smed_v6_8058_0_1, dd_Smed_v6_8058_0_1, [Score=100, Expect=4e-22]} {RNA1310_62298} {RNA815_39342}
19. MligTC455_33907 20 0.42 Mlig455_008159, Mlig455_069580

Neo: -

Age: -

 0.95 - - - - - 0.950

Mlig455_008159 {REF} {Length: 168} {NoTransDecoderORF} {RNA815_40467}

Mlig455_069580 {REF} {Length: 1478} {RNA815_40467}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA