M. lignano Tomo-Seq
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Results for MligTC455_01183

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_01183 48 0.99 Mlig455_059795, Mlig455_061486

Neo: -

Age: -

Mlig455_059795 {REF} {Length: 299} {NoTransDecoderORF}

Mlig455_061486 {REF} {Length: 105} {NoTransDecoderORF}

Cumulative graph for MligTC455_01183

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 4.938 1.466 0.03908 0.48281
RegionR2 -1.681 1.466 0.97932 1.00000
RegionR3 1.632 1.466 0.09720 0.54775
RegionR4 3.02 1.466 0.02168 0.10816
RegionR5 2.301 1.466 0.00900 0.05349
RegionR6 0.574 1.466 0.54877 1.00000
RegionR7 -5.303 1.466 0.99962 1.00000
RegionR8 -5.482 1.466 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.218 1.466 0.51801 1.00000
RegenerationR2 -1.231 1.466 0.28312 0.72626
RegenerationR3 -4.217 1.466 0.00410 0.11539
RegenerationR4 -2.532 1.466 0.12231 0.53190
RegenerationR5 -4.94 1.466 0.00071 0.04449
RegenerationR6 0.935 1.466 0.29263 0.64332
RegenerationBL 0.902 1.466 0.99991 1.00000
RegenerationTP 0.835 1.466 1.00000 1.00000


Genes with expression patterns similar to MligTC455_01183

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_01183 48 0.99 Mlig455_059795, Mlig455_061486

Neo: -

Age: -

 3 1.000 1.000 - 1.000 - -

Mlig455_059795 {REF} {Length: 299} {NoTransDecoderORF}

Mlig455_061486 {REF} {Length: 105} {NoTransDecoderORF}
2. MligTC455_15046 23 0.48 Mlig455_015602

Neo: -

Age: -

 0.988 - - - 0.988 - - Mlig455_015602 {REF} {Length: 1609} {RNA1310_38001} {RNA815_39082}
3. MligTC455_18132 9 0.19 Mlig455_000420

Neo: -

Age: -

 0.973 - - - 0.973 - - Mlig455_000420 {REF} {Length: 3732} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=22.3]} {Smed: dd_Smed_v6_6124_0_1, dd_Smed_v6_6124_0_1, [Score=110, Expect=3e-26]} {RNA1509_20088} {RNA1310_14330} {RNA815_29842}
4. MligTC455_07921 38 0.78 Mlig455_029239

Neo: -

Age: -

Region-enriched R6: 4.158/0.01882

 OSR1 0.972 - - - 0.972 - - Mlig455_029239 {REF} {Length: 1330} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=54.3]; Zinc-finger double domain [PF13465.8, score=46.1]; C2H2-type zinc finger [PF13894.8, score=40.7]; C2H2-type zinc finger [PF13912.8, score=28.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=24.8]} {Human: ENSG00000143867, OSR1, odd-skipped related transciption factor 1, [RH, Score=179, Expect=5e-55]; ENSG00000164920, OSR2, odd-skipped related transciption factor 2, [RH, Score=177, Expect=6e-54]} {Mouse: ENSMUSG00000048387, Osr1, odd-skipped related transcription factor 1, [RH, Score=176, Expect=4e-54]; ENSMUSG00000022330, Osr2, odd-skipped related 2, [RH, Score=176, Expect=3e-54]} {Dmel: FBgn0002985, odd, odd skipped, [RH, Score=158, Expect=4e-46]} {Celegans: WBGene00003846, odd-2, Protein odd-skipped-related 2, [RH, Score=169, Expect=7e-52]} {Smed: dd_Smed_v6_10039_0_1, dd_Smed_v6_10039_0_1, [RH, Score=189, Expect=3e-59]} {RNA1509_57522} {RNA1310_38770} {RNA815_13682.1}
5. MligTC455_21037 24 0.5 Mlig455_040146

Neo: -

Age: logFC(26M/2M)=-0.461

 NOTCH2 0.967 - - - 0.967 - - Mlig455_040146 {REF} {Length: 4039} {Pfam: Calcium-binding EGF domain [PF07645.17, score=270.5]; EGF-like domain [PF00008.29, score=200.5]; Human growth factor-like EGF [PF12661.9, score=140.1]; EGF domain [PF12947.9, score=120.5]; Delta serrate ligand [PF01414.21, score=94.9]; EGF-like domain [PF07974.15, score=75.4]; Complement Clr-like EGF-like [PF12662.9, score=44.2]} {Human: ENSG00000134250, NOTCH2, notch 2, [Score=281, Expect=1e-77]; ENSG00000074181, NOTCH3, notch 3, [Score=279, Expect=4e-77]; ENSG00000235396, NOTCH4, notch 4, [Score=277, Expect=2e-76]; ENSG00000234876, NOTCH4, notch 4, [Score=275, Expect=9e-76]; ENSG00000204301, NOTCH4, notch 4, [Score=275, Expect=9e-76]; ENSG00000223355, NOTCH4, notch 4, [Score=275, Expect=8e-76]; ENSG00000206312, NOTCH4, notch 4, [Score=275, Expect=9e-76]; ENSG00000232339, NOTCH4, notch 4, [Score=275, Expect=8e-76]; ENSG00000148400, NOTCH1, notch 1, [Score=271, Expect=2e-74]} {Mouse: ENSMUSG00000027878, Notch2, notch 2, [Score=285, Expect=3e-79]; ENSMUSG00000026923, Notch1, notch 1, [Score=272, Expect=7e-75]} {Dmel: FBgn0004647, N, Notch, [Score=283, Expect=2e-78]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=228, Expect=5e-61]} {Smed: dd_Smed_v6_13823_0_1, dd_Smed_v6_13823_0_1, [Score=229, Expect=4e-62]} {RNA1509_24587} {RNA1310_8063.1} {RNA815_2179.1}
6. MligTC455_00511 23 0.49 Mlig455_069083

Neo: -

Age: -

Region-enriched R4: 3.129/0.04321

 0.966 - - - 0.966 - - Mlig455_069083 {REF} {Length: 239} {NoTransDecoderORF} {RNA1310_140483}
7. MligTC455_30589 76 1.58 Mlig455_014800, Mlig455_042626

Neo: -

Age: Up-Down-Up

 0.965 - - - 0.965 - -

Mlig455_014800 {REF} {Length: 4522} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=132.9]} {Celegans: WBGene00007723, C25F9.2, [Score=290, Expect=2e-84]} {RNA1509_4648} {RNA1310_3417} {RNA815_2072}

Mlig455_042626 {REF} {Length: 4176} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=141.2]} {Celegans: WBGene00007723, C25F9.2, [Score=291, Expect=7e-85]} {RNA1509_4648} {RNA1310_2280.1} {RNA815_694.2}
8. MligTC455_18917 66 1.37 Mlig455_039555, Mlig455_051360

Neo: -

Age: -

 0.963 - - - 0.963 - -

Mlig455_039555 {REF} {Length: 396} {RNA1310_56672} {RNA815_59682}

Mlig455_051360 {REF} {Length: 384} {RNA1310_56672} {RNA815_59682}
9. MligTC455_39366 61 1.28 Mlig455_048163

Neo: -

Age: -

 0.963 - - - 0.963 - - Mlig455_048163 {REF} {Length: 3265} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=26.8]} {RNA1509_21488} {RNA1310_52319.1} {RNA815_17448}
10. MligTC455_54150 45 0.93 Mlig455_040594

Neo: -

Age: -

 0.963 - - - 0.963 - - Mlig455_040594 {REF} {Length: 2865} {TRANSSPLICED} {RNA1310_34799.1} {RNA815_13806}
11. MligTC455_34690 26 0.54 Mlig455_001726, Mlig455_038637

Neo: -

Age: -

 0.956 - - - 0.956 - -

Mlig455_001726 {REF} {Length: 2050} {NoTransDecoderORF} {RNA1509_45595} {RNA1310_85276} {RNA815_7856.1}

Mlig455_038637 {REF} {Length: 1643} {NoTransDecoderORF} {RNA1310_77880}
12. MligTC455_14954 32 0.66 Mlig455_051468, Mlig455_066698

Neo: -

Age: -

 0.951 - - - 0.951 - -

Mlig455_051468 {REF} {Length: 741} {NoTransDecoderORF}

Mlig455_066698 {REF} {Length: 2055} {Smed: dd_Smed_v6_5882_0_1, dd_Smed_v6_5882_0_1, [Score=41.2, Expect=1e-05]} {RNA1509_10844} {RNA1310_32662} {RNA815_30370}
13. MligTC455_28363 198 4.11 Mlig455_054836

Neo: -

Age: Down-Down-Down

 RTL1 0.95 - - - 0.950 - - Mlig455_054836 {REF} {Length: 8036} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=103.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.9]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=28.0]; Zinc knuckle [PF13696.8, score=21.6]; Aspartyl protease [PF13650.8, score=21.5]; Zinc knuckle [PF00098.25, score=21.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.9]; Aspartyl protease [PF09668.12, score=20.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.0, Expect=4e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=6e-06]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=270, Expect=9e-79]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}

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