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Results for MligTC455_28363

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28363 198 4.11 Mlig455_054836

Neo: -

Age: Down-Down-Down

 RTL1 Mlig455_054836 {REF} {Length: 8036} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=103.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.9]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=28.0]; Zinc knuckle [PF13696.8, score=21.6]; Aspartyl protease [PF13650.8, score=21.5]; Zinc knuckle [PF00098.25, score=21.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.9]; Aspartyl protease [PF09668.12, score=20.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.0, Expect=4e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=6e-06]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=270, Expect=9e-79]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}

Cumulative graph for MligTC455_28363

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.684 2.644 0.79433 1.00000
RegionR2 -0.066 2.644 0.93823 1.00000
RegionR3 -0.625 2.644 0.40544 0.93252
RegionR4 -0.357 2.644 0.69482 0.98521
RegionR5 0.415 2.644 0.44744 0.80912
RegionR6 -0.524 2.644 0.49105 1.00000
RegionR7 0.409 2.644 0.68468 1.00000
RegionR8 1.431 2.644 0.20680 0.80834

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.026 2.644 0.74711 1.00000
RegenerationR2 0.748 2.644 0.20596 0.65293
RegenerationR3 0.51 2.644 0.48496 0.85282
RegenerationR4 0.194 2.644 0.79011 0.98395
RegenerationR5 0.063 2.644 0.92232 1.00000
RegenerationR6 1.892 2.644 0.00413 0.07699
RegenerationBL 0.423 2.644 0.61759 0.96119
RegenerationTP -1.355 2.644 0.20909 0.65091


Genes with expression patterns similar to MligTC455_28363

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28363 198 4.11 Mlig455_054836

Neo: -

Age: Down-Down-Down

 RTL1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_054836 {REF} {Length: 8036} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=103.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.9]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=28.0]; Zinc knuckle [PF13696.8, score=21.6]; Aspartyl protease [PF13650.8, score=21.5]; Zinc knuckle [PF00098.25, score=21.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.9]; Aspartyl protease [PF09668.12, score=20.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.0, Expect=4e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=6e-06]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=270, Expect=9e-79]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}
2. MligTC455_28366 307 6.4 Mlig455_065787, Mlig455_067531

Neo: Int S/G2/M

Age: Up-Down-Down

 RTL1 5.598 0.969 0.942 0.869 0.905 0.956 0.957

Mlig455_065787 {REF} {Length: 9629} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=33.1]; 'Cold-shock' DNA-binding domain [PF00313.24, score=30.5]; Aspartyl protease [PF13650.8, score=22.1]; Zinc knuckle [PF13696.8, score=22.1]; Zinc knuckle [PF00098.25, score=21.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=21.5]; Aspartyl protease [PF09668.12, score=20.6]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=51.2, Expect=3e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=125, Expect=6e-30]} {RNA1509_4878} {RNA1310_542.1, RNA1509_4878} {RNA1509_4878, RNA815_66.1}

Mlig455_067531 {REF} {Length: 9936} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.2]; Integrase core domain [PF00665.28, score=47.0]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.9]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.3]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.8, Expect=3e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=9e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=317, Expect=2e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}
3. MligTC455_07921 38 0.78 Mlig455_029239

Neo: -

Age: -

Region-enriched R6: 4.158/0.01882

 OSR1 1.717 - - - 0.952 - 0.765 Mlig455_029239 {REF} {Length: 1330} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=54.3]; Zinc-finger double domain [PF13465.8, score=46.1]; C2H2-type zinc finger [PF13894.8, score=40.7]; C2H2-type zinc finger [PF13912.8, score=28.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=24.8]} {Human: ENSG00000143867, OSR1, odd-skipped related transciption factor 1, [RH, Score=179, Expect=5e-55]; ENSG00000164920, OSR2, odd-skipped related transciption factor 2, [RH, Score=177, Expect=6e-54]} {Mouse: ENSMUSG00000048387, Osr1, odd-skipped related transcription factor 1, [RH, Score=176, Expect=4e-54]; ENSMUSG00000022330, Osr2, odd-skipped related 2, [RH, Score=176, Expect=3e-54]} {Dmel: FBgn0002985, odd, odd skipped, [RH, Score=158, Expect=4e-46]} {Celegans: WBGene00003846, odd-2, Protein odd-skipped-related 2, [RH, Score=169, Expect=7e-52]} {Smed: dd_Smed_v6_10039_0_1, dd_Smed_v6_10039_0_1, [RH, Score=189, Expect=3e-59]} {RNA1509_57522} {RNA1310_38770} {RNA815_13682.1}
4. MligTC455_54150 45 0.93 Mlig455_040594

Neo: -

Age: -

 1.674 - - - 0.963 - 0.711 Mlig455_040594 {REF} {Length: 2865} {TRANSSPLICED} {RNA1310_34799.1} {RNA815_13806}
5. MligTC455_18132 9 0.19 Mlig455_000420

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_000420 {REF} {Length: 3732} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=22.3]} {Smed: dd_Smed_v6_6124_0_1, dd_Smed_v6_6124_0_1, [Score=110, Expect=3e-26]} {RNA1509_20088} {RNA1310_14330} {RNA815_29842}
6. MligTC455_01183 48 0.99 Mlig455_059795, Mlig455_061486

Neo: -

Age: -

 0.95 - - - 0.950 - -

Mlig455_059795 {REF} {Length: 299} {NoTransDecoderORF}

Mlig455_061486 {REF} {Length: 105} {NoTransDecoderORF}

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