M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_01345

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_01345 8 0.16 Mlig455_002181

Neo: -

Age: -

 Mlig455_002181 {REF} {Length: 655} {NoTransDecoderORF} {RNA1509_33446} {RNA1310_9913} {RNA815_13562.1}

Cumulative graph for MligTC455_01345

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_01345

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_01345 8 0.16 Mlig455_002181

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_002181 {REF} {Length: 655} {NoTransDecoderORF} {RNA1509_33446} {RNA1310_9913} {RNA815_13562.1}
2. MligTC455_06027 6 0.12 Mlig455_057701

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_057701 {REF} {Length: 584} {NoTransDecoderORF}
3. MligTC455_46590 69 1.44 Mlig455_042477

Neo: -

Age: logFC(26M/2M)=-0.499

 ANKRD50 0.999 - - - - 0.999 - Mlig455_042477 {REF} {Length: 4550} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=193.8]; Ankyrin repeats (many copies) [PF13637.8, score=113.6]; Ankyrin repeats (many copies) [PF13857.8, score=103.7]; Ankyrin repeat [PF13606.8, score=101.6]; Ankyrin repeat [PF00023.32, score=85.9]; Mab-21 protein [PF03281.16, score=30.8]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=165, Expect=7e-41]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=164, Expect=1e-40]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=159, Expect=7e-39]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=147, Expect=1e-35]} {Smed: dd_Smed_v6_2072_0_6, dd_Smed_v6_2072_0_6, [Score=145, Expect=5e-35]} {RNA1509_42401} {RNA1310_4658.1, RNA1509_42401} {RNA1509_42401, RNA815_6429.1}
4. MligTC455_18902 170 3.55 Mlig455_034019

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.357

 TMEM136 0.996 - - - - 0.996 - Mlig455_034019 {REF} {Length: 3824} {TRANSSPLICED} {Pfam: TLC domain [PF03798.18, score=62.1]} {Human: ENSG00000181264, TMEM136, transmembrane protein 136, [Score=117, Expect=4e-31]} {Mouse: ENSMUSG00000048503, Tmem136, transmembrane protein 136, [Score=115, Expect=1e-30]} {Smed: dd_Smed_v6_10466_0_2, dd_Smed_v6_10466_0_2, [Score=102, Expect=4e-26]} {RNA1509_51840} {RNA1310_27654, RNA1509_51840} {RNA1509_51840, RNA815_12680}
5. MligTC455_22687 13 0.28 Mlig455_000568

Neo: -

Age: -

 GRIK3 0.991 - - - - 0.991 - Mlig455_000568 {REF} {Length: 3271} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=78.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=50.7]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=127, Expect=1e-29]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=123, Expect=3e-28]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=121, Expect=1e-27]} {Mouse: ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=120, Expect=2e-27]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=120, Expect=1e-27]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=119, Expect=3e-27]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=115, Expect=1e-25]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=122, Expect=2e-28]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=105, Expect=5e-23]} {Smed: dd_Smed_v6_22973_0_1, dd_Smed_v6_22973_0_1, [Score=120, Expect=8e-28]} {RNA1310_20394.2} {RNA815_45848}
6. MligTC455_03444 4 0.08 Mlig455_042385

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_042385 {REF} {Length: 2176} {RNA1509_35100} {RNA1310_18231} {RNA815_38824}
7. MligTC455_29417 16 0.34 Mlig455_056308

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_056308 {REF} {Length: 1802} {Pfam: C2 domain [PF00168.32, score=68.7]} {RNA1310_31782} {RNA815_14404}
8. MligTC455_57427 3 0.05 Mlig455_044620

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_044620 {REF} {Length: 323} {NoTransDecoderORF}
9. MligTC455_11735 9 0.19 Mlig455_055836

Neo: Int S/G2/M

Age: -

 0.974 - - - - 0.974 - Mlig455_055836 {REF} {Length: 97} {NoTransDecoderORF} {RNA1509_37388} {RNA1310_118423} {RNA815_14498.2}
10. MligTC455_18722 24 0.5 Mlig455_018294

Neo: Int S/G2/M

Age: Up-Down-Down

 PLK2 0.973 - - - - 0.973 - Mlig455_018294 {REF} {Length: 3188} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=53.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=23.3]} {Human: ENSG00000145632, PLK2, polo like kinase 2, [Score=75.1, Expect=3e-15]; ENSG00000166851, PLK1, polo like kinase 1, [Score=73.2, Expect=1e-14]} {Mouse: ENSMUSG00000030867, Plk1, polo like kinase 1, [Score=77.0, Expect=4e-16]; ENSMUSG00000021701, Plk2, polo like kinase 2, [Score=74.7, Expect=3e-15]} {Dmel: FBgn0003124, polo, [Score=65.1, Expect=3e-12]} {Celegans: WBGene00004042, plk-1, Serine/threonine-protein kinase plk-1, [Score=62.8, Expect=2e-11]} {Smed: dd_Smed_v6_3838_0_1, dd_Smed_v6_3838_0_1, [Score=60.5, Expect=6e-11]} {RNA1509_35335} {RNA1310_29286} {RNA815_15815}
11. MligTC455_08916 9 0.2 Mlig455_009151

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_009151 {REF} {Length: 510} {NoTransDecoderORF} {RNA1310_49412} {RNA815_40095}
12. MligTC455_25314 18 0.39 Mlig455_004144, Mlig455_019456

Neo: -

Age: Down-Down-Up

Region-enriched R4: 5.385/0.00156

 MYRF 0.969 - - - - 0.969 -

Mlig455_004144 {REF} {Length: 3239} {Pfam: NDT80 / PhoG like DNA-binding family [PF05224.14, score=61.0]; Myelin regulatory factor ICA domain [PF13887.8, score=56.4]; Chaperone of endosialidase [PF13884.8, score=26.5]} {Human: ENSG00000124920, MYRF, myelin regulatory factor, [Score=243, Expect=3e-66]} {Mouse: ENSMUSG00000036098, Myrf, myelin regulatory factor, [Score=238, Expect=1e-64]} {Dmel: FBgn0034985, CG3328, [Score=234, Expect=2e-63]} {Celegans: WBGene00004134, myrf-1, Myelin regulatory factor related, [RH, Score=164, Expect=3e-41]} {RNA1509_8962} {RNA1310_4590.2, RNA1509_8962} {RNA1509_8962, RNA815_1404}

Mlig455_019456 {REF} {Length: 3217} {Pfam: NDT80 / PhoG like DNA-binding family [PF05224.14, score=61.0]; Myelin regulatory factor ICA domain [PF13887.8, score=56.4]; Chaperone of endosialidase [PF13884.8, score=26.5]} {Human: ENSG00000124920, MYRF, myelin regulatory factor, [Score=243, Expect=3e-66]} {Mouse: ENSMUSG00000036098, Myrf, myelin regulatory factor, [Score=238, Expect=1e-64]} {Dmel: FBgn0034985, CG3328, [Score=234, Expect=2e-63]} {Celegans: WBGene00004134, myrf-1, Myelin regulatory factor related, [RH, Score=164, Expect=2e-41]} {RNA1509_8962} {RNA1310_4590.2} {RNA815_1404}
13. MligTC455_13890 51 1.06 Mlig455_016963

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_016963 {REF} {Length: 894} {NoTransDecoderORF} {RNA1509_36146} {RNA1310_75460} {RNA815_9284}
14. MligTC455_31778 52 1.08 Mlig455_043205

Neo: -

Age: Up-Down-Down

 TRIM3 0.965 - - - - 0.965 - Mlig455_043205 {REF} {Length: 1914} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=35.6]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=61.6, Expect=2e-09]; ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=60.5, Expect=5e-09]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=61.6, Expect=2e-09]; ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=60.5, Expect=4e-09]} {Celegans: WBGene00003026, lin-41, [Score=54.7, Expect=2e-07]} {RNA1509_23300} {RNA1310_14145.1} {RNA815_3900.1}
15. MligTC455_04725 11 0.23 Mlig455_018907

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_018907 {REF} {Length: 2644} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=21.3]} {RNA1310_10378.1} {RNA815_32677}
16. MligTC455_22408 69 1.43 Mlig455_020360

Neo: Int S/G2/M

Age: Down-Up-Down

 MAN1B1 0.96 - - - - 0.960 - Mlig455_020360 {REF} {Length: 3567} {TRANSSPLICED} {Pfam: Glycosyl hydrolase family 47 [PF01532.22, score=516.9]} {Human: ENSG00000177239, MAN1B1, mannosidase alpha class 1B member 1, [RH, Score=509, Expect=2e-173]} {Mouse: ENSMUSG00000036646, Man1b1, mannosidase, alpha, class 1B, member 1, [RH, Score=522, Expect=3e-179]} {Dmel: FBgn0039634, alpha-Man-Ib, alpha-Mannosidase class I b, [RH, Score=479, Expect=2e-162]} {Celegans: WBGene00020197, mans-3, alpha-1,2-Mannosidase, [RH, Score=454, Expect=3e-154]} {Smed: dd_Smed_v6_7032_0_1, dd_Smed_v6_7032_0_1, [RH, Score=514, Expect=3e-178]} {RNA1509_10584} {RNA1310_11173, RNA1509_10584} {RNA1509_10584, RNA815_9464}
17. MligTC455_45854 4 0.09 Mlig455_042941

Neo: -

Age: Down-Down-Down

 0.958 - - - - 0.958 - Mlig455_042941 {REF} {Length: 1777} {TRANSSPLICED} {Pfam: RNase H [PF00075.26, score=47.4]; Reverse transcriptase-like [PF13456.8, score=18.5]} {RNA1509_50041} {RNA1310_1401} {RNA815_252.1}
18. MligTC455_29760 19 0.39 Mlig455_013569

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_013569 {REF} {Length: 2248} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_35898} {RNA1310_38329} {RNA815_47127}
19. MligTC455_22189 82 1.71 Mlig455_046570

Neo: Irradiation

Age: logFC(26M/2M)=-0.350

Region-enriched R5: 3.640/0.00155

 0.955 - - - - 0.955 - Mlig455_046570 {REF} {Length: 3148} {Pfam: CDC45-like protein [PF02724.16, score=33.0]; GRAM domain [PF02893.22, score=32.2]; Nop14-like family [PF04147.14, score=24.4]; Presenilin [PF01080.19, score=22.1]} {Dmel: FBgn0085423, CG34394, [Score=51.2, Expect=1e-06]} {RNA1509_54746} {RNA1310_29343} {RNA815_28931}
20. MligTC455_14596 9 0.19 Mlig455_063884

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_063884 {REF} {Length: 439} {NoTransDecoderORF} {RNA1310_138760}
21. MligTC455_49644 38 0.79 Mlig455_027199

Neo: Int S/G2/M

Age: -

 0.953 - - - - 0.953 - Mlig455_027199 {REF} {Length: 2902} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=44.2]} {RNA1509_25402} {RNA1310_45818.1} {RNA815_14744.1}
22. MligTC455_10720 12 0.26 Mlig455_042129

Neo: Irradiation

Age: Up-Down-Down

 0.951 - - - - 0.951 - Mlig455_042129 {REF} {Length: 3078} {Pfam: F5/8 type C domain [PF00754.27, score=24.3]; PAN domain [PF00024.28, score=19.7]} {RNA1509_21706} {RNA1310_79817} {RNA815_41563}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA