M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_03124

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_03124 8 0.17 Mlig455_052005

Neo: -

Age: -

 Mlig455_052005 {REF} {Length: 598} {NoTransDecoderORF} {RNA1509_56084} {RNA1310_67138} {RNA815_60226}

Cumulative graph for MligTC455_03124

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_03124

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_03124 8 0.17 Mlig455_052005

Neo: -

Age: -

 1 - 1.000 - - - - Mlig455_052005 {REF} {Length: 598} {NoTransDecoderORF} {RNA1509_56084} {RNA1310_67138} {RNA815_60226}
2. MligTC455_11562 10 0.22 Mlig455_041275

Neo: -

Age: -

 0.989 - 0.989 - - - - Mlig455_041275 {REF} {Length: 903} {RNA1509_37150} {RNA1310_56846} {RNA815_33016.1}
3. MligTC455_08193 19 0.39 Mlig455_050592

Neo: -

Age: -

 0.984 - 0.984 - - - - Mlig455_050592 {REF} {Length: 642} {RNA1310_38120.1} {RNA815_54435}
4. MligTC455_19696 10 0.21 Mlig455_020108, Mlig455_069889

Neo: -

Age: -

 0.984 - 0.984 - - - -

Mlig455_020108 {REF} {Length: 743} {RNA1509_17766} {RNA1310_56703} {RNA815_9084.1}

Mlig455_069889 {REF} {Length: 743} {RNA1509_17766} {RNA1310_56703} {RNA815_9084.1}
5. MligTC455_29683 28 0.57 Mlig455_034540

Neo: -

Age: -

 0.977 - 0.977 - - - - Mlig455_034540 {REF} {Length: 1928} {Pfam: THAP domain [PF05485.14, score=33.7]; Transposase protein [PF12017.10, score=30.2]} {RNA1509_16956} {RNA1310_88414} {RNA815_33530}
6. MligTC455_44582 13 0.28 Mlig455_067754

Neo: Int S/G2/M

Age: -

 0.974 - 0.974 - - - - Mlig455_067754 {REF} {Length: 2342} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=141.5]} {RNA1310_22174} {RNA815_24783}
7. MligTC455_03424 3 0.07 Mlig455_036663

Neo: -

Age: Up-Down-Down

 0.973 - 0.973 - - - - Mlig455_036663 {REF} {Length: 982} {Pfam: Baculovirus polyhedron envelope protein, PEP, C terminus [PF04513.14, score=26.8]; Intra-flagellar transport protein 57 [PF10498.11, score=26.5]; Sec34-like family [PF04136.17, score=25.3]; Protein of unknown function (DUF1664) [PF07889.14, score=24.8]; Predicted membrane protein (DUF2106) [PF09879.11, score=22.9]; Domain of unknown function (DUF1970) [PF09301.12, score=21.7]; Initiation control protein YabA [PF06156.15, score=21.6]; Herpes virus major outer envelope glycoprotein (BLLF1) [PF05109.15, score=17.9]} {Mouse: ENSMUSG00000046056, Sbsn, suprabasin, [RH, Score=71.2, Expect=1e-13]} {RNA1310_65283} {RNA815_56810.1}
8. MligTC455_08753 8 0.16 Mlig455_038622

Neo: -

Age: -

 0.967 - 0.967 - - - - Mlig455_038622 {REF} {Length: 2031} {RNA1509_4722} {RNA1310_2185} {RNA815_335.3}
9. MligTC455_17109 16 0.34 Mlig455_052533

Neo: -

Age: logFC(26M/2M)=1.201

 0.966 - 0.966 - - - - Mlig455_052533 {REF} {Length: 5477} {Pfam: Phage integrase family [PF00589.24, score=36.3]} {RNA1509_57857} {RNA1310_23997.1} {RNA815_7697}
10. MligTC455_13514 53 1.1 Mlig455_010467

Neo: Germline

Age: Down-Down-Down, logFC(26M/2M)=-1.228

 0.963 - 0.963 - - - - Mlig455_010467 {REF} {Length: 1212} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=49.7]} {Smed: dd_Smed_v6_16336_0_2, dd_Smed_v6_16336_0_2, [Score=92.4, Expect=1e-23]} {RNA1509_29748} {RNA1310_27208} {RNA815_13547.2}
11. MligTC455_29355 8 0.17 Mlig455_066666

Neo: -

Age: -

 0.962 - 0.962 - - - - Mlig455_066666 {REF} {Length: 2020} {RNA1509_14432, RNA1509_42417, RNA1509_43799} {RNA1310_1210, RNA1509_42417, RNA1509_43799} {RNA1509_42417, RNA1509_43799, RNA815_18995.1}
12. MligTC455_02814 7 0.15 Mlig455_015991

Neo: Germline

Age: -

 0.961 - 0.961 - - - - Mlig455_015991 {REF} {Length: 334} {NoTransDecoderORF} {RNA1509_43596} {RNA1310_16896.1} {RNA815_47769}
13. MligTC455_11976 18 0.37 Mlig455_030317

Neo: -

Age: -

Region-enriched R4: 3.345/0.02722

 0.961 - 0.961 - - - - Mlig455_030317 {REF} {Length: 1158} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=22.0]} {RNA1509_16469} {RNA1310_21639.1}
14. MligTC455_39073 54 1.13 Mlig455_060146

Neo: Int S/G2/M

Age: Up-Down-Up

Region-enriched R4: 5.421/0.00338

 0.961 - 0.961 - - - - Mlig455_060146 {REF} {Length: 1210} {Pfam: Tetraspanin family [PF00335.22, score=37.8]} {RNA1310_33145} {RNA815_11307}
15. MligTC455_11890 21 0.45 Mlig455_000827

Neo: -

Age: -

 0.957 - 0.957 - - - - Mlig455_000827 {REF} {Length: 2241} {RNA1509_2911} {RNA1310_117291}
16. MligTC455_37219 10 0.22 Mlig455_023042, Mlig455_031644, Mlig455_040437, Mlig455_069768, Mlig455_069769

Neo: Irradiation

Age: Up-Down-Down

 0.957 - 0.957 - - - -

Mlig455_023042 {REF} {Length: 1049} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=37.6]} {RNA1509_41272} {RNA1310_15646.2} {RNA815_6229.1}

Mlig455_031644 {REF} {Length: 692} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=43.1]} {RNA1509_41272} {RNA1310_15646.2} {RNA815_50143}

Mlig455_040437 {REF} {Length: 5068} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=39.0]} {RNA1509_4722} {RNA1310_655.1} {RNA815_335.1}

Mlig455_069768 {REF} {Length: 331} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=39.0]} {RNA1509_41272} {RNA1310_13129.1} {RNA815_6229.1}

Mlig455_069769 {REF} {Length: 323} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=39.0]} {RNA1509_41272} {RNA1310_15646.2} {RNA815_6229.1}
17. MligTC455_05647 48 1.01 Mlig455_059394, Mlig455_065555

Neo: -

Age: -

Region-enriched R4: 4.444/0.00445

 0.956 - 0.956 - - - -

Mlig455_059394 {REF} {Length: 1110} {RNA1310_46850}

Mlig455_065555 {REF} {Length: 2312} {RNA1310_46850}
18. MligTC455_18676 24 0.5 Mlig455_018143, Mlig455_056919

Neo: -

Age: -

 0.955 - 0.955 - - - -

Mlig455_018143 {REF} {Length: 569} {RNA1509_2129} {RNA1310_82423} {RNA815_43981}

Mlig455_056919 {REF} {Length: 119} {NoTransDecoderORF} {RNA1310_82423} {RNA815_43981}
19. MligTC455_27919 11 0.23 Mlig455_033686

Neo: -

Age: Down-Up-Down

 0.955 - 0.955 - - - - Mlig455_033686 {REF} {Length: 2178} {Pfam: Kelch motif [PF01344.27, score=47.6]; Kelch motif [PF13964.8, score=40.3]; Galactose oxidase, central domain [PF13418.8, score=39.2]; Galactose oxidase, central domain [PF13415.8, score=26.9]; Kelch motif [PF07646.17, score=24.4]} {Smed: dd_Smed_v6_2508_0_1, dd_Smed_v6_2508_0_1, [Score=76.3, Expect=4e-17]} {RNA1509_20477} {RNA1310_29714} {RNA815_11073}
20. MligTC455_06920 64 1.33 Mlig455_030382

Neo: Germline

Age: -

Region-enriched R4: 3.121/0.01836

 0.954 - 0.954 - - - - Mlig455_030382 {REF} {Length: 1405} {RNA1509_54678} {RNA1310_47150, RNA1509_54678} {RNA1509_54678, RNA815_42356}
21. MligTC455_01237 1 0.02 Mlig455_057864

Neo: -

Age: -

 0.951 - 0.951 - - - - Mlig455_057864 {REF} {Length: 768} {RNA1310_40043.2} {RNA815_38807}
22. MligTC455_02359 2 0.03 Mlig455_006588

Neo: -

Age: -

 0.951 - 0.951 - - - - Mlig455_006588 {REF} {Length: 1025} {RNA1509_54215} {RNA1310_148527} {RNA815_46313}
23. MligTC455_42265 34 0.71 Mlig455_015790

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R4: 5.124/0.02699

 0.95 - 0.950 - - - - Mlig455_015790 {REF} {Length: 1177} {RNA1509_57368} {RNA1310_24979.1, RNA1509_57368} {RNA1509_57368, RNA815_12703}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA