TomoSeq data search

Data search

Results for MligTC455_03532

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_03532

900

18.74

Mlig455_038713

Neo: -

Age: -

Region-enriched R4: 1.554/0.01859

HMCN2

Mlig455_038713 {REF} {Length: 2884} {Pfam: Immunoglobulin domain [PF13927.8, score=98.3]; Immunoglobulin I-set domain [PF07679.18, score=73.4]; Immunoglobulin domain [PF00047.27, score=61.0]; Immunoglobulin domain [PF13895.8, score=59.7]; Immunoglobulin V-set domain [PF07686.19, score=51.1]; Immunoglobulin domain [PF18452.3, score=22.0]; CD47 immunoglobulin-like domain [PF08204.13, score=18.7]} {Human: ENSG00000148357, HMCN2, hemicentin 2, [Score=70.5, Expect=2e-12]; ENSG00000146555, SDK1, sidekick cell adhesion molecule 1, [Score=68.9, Expect=7e-12]; ENSG00000160867, FGFR4, fibroblast growth factor receptor 4, [Score=68.9, Expect=5e-12]; ENSG00000143341, HMCN1, hemicentin 1, [Score=67.8, Expect=2e-11]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=73.2, Expect=2e-13]} {Dmel: FBgn0052791, DIP-alpha, Dpr-interacting protein alpha, [RH, Score=84.7, Expect=2e-17]} {Celegans: WBGene00004372, rig-5, NeuRonal IGCAM, [Score=68.2, Expect=3e-12]} {Smed: dd_Smed_v6_3768_0_1, dd_Smed_v6_3768_0_1, [RH, Score=169, Expect=7e-49]} {RNA1509_2740} {RNA1310_22774.1} {RNA815_4345.1}

Cumulative graph for MligTC455_03532

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-3.723	4.484	0.02070	0.39462
RegionR2	0.085	4.484	0.86801	1.00000
RegionR3	0.496	4.484	0.27764	0.82102
RegionR4	1.554	4.484	0.00211	0.01859
RegionR5	1.008	4.484	0.01659	0.08446
RegionR6	1.023	4.484	0.01891	0.24629
RegionR7	-0.687	4.484	0.33989	0.97607
RegionR8	0.245	4.484	0.71130	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.75	4.484	0.48740	1.00000
RegenerationR2	-0.103	4.484	0.79274	0.98748
RegenerationR3	0.195	4.484	0.65360	0.93045
RegenerationR4	-0.088	4.484	0.84188	1.00000
RegenerationR5	0.497	4.484	0.22046	0.65530
RegenerationR6	-0.214	4.484	0.62093	0.88139
RegenerationBL	0.485	4.484	0.30383	0.66776
RegenerationTP	0.476	4.484	0.39114	0.82338

Genes with expression patterns similar to MligTC455_03532

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_03532	900	18.74	Mlig455_038713	Neo: - Age: - Region-enriched R4: 1.554/0.01859	HMCN2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_038713 {REF} {Length: 2884} {Pfam: Immunoglobulin domain [PF13927.8, score=98.3]; Immunoglobulin I-set domain [PF07679.18, score=73.4]; Immunoglobulin domain [PF00047.27, score=61.0]; Immunoglobulin domain [PF13895.8, score=59.7]; Immunoglobulin V-set domain [PF07686.19, score=51.1]; Immunoglobulin domain [PF18452.3, score=22.0]; CD47 immunoglobulin-like domain [PF08204.13, score=18.7]} {Human: ENSG00000148357, HMCN2, hemicentin 2, [Score=70.5, Expect=2e-12]; ENSG00000146555, SDK1, sidekick cell adhesion molecule 1, [Score=68.9, Expect=7e-12]; ENSG00000160867, FGFR4, fibroblast growth factor receptor 4, [Score=68.9, Expect=5e-12]; ENSG00000143341, HMCN1, hemicentin 1, [Score=67.8, Expect=2e-11]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=73.2, Expect=2e-13]} {Dmel: FBgn0052791, DIP-alpha, Dpr-interacting protein alpha, [RH, Score=84.7, Expect=2e-17]} {Celegans: WBGene00004372, rig-5, NeuRonal IGCAM, [Score=68.2, Expect=3e-12]} {Smed: dd_Smed_v6_3768_0_1, dd_Smed_v6_3768_0_1, [RH, Score=169, Expect=7e-49]} {RNA1509_2740} {RNA1310_22774.1} {RNA815_4345.1}
2.	MligTC455_45268	1496	31.16	Mlig455_016251	Neo: - Age: -	PDK3	1.82	-	-	-	0.950	-	0.870	Mlig455_016251 {REF} {Length: 3291} {TRANSSPLICED} {Pfam: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase [PF10436.11, score=159.5]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.28, score=52.7]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF13589.8, score=18.6]} {Human: ENSG00000067992, PDK3, pyruvate dehydrogenase kinase 3, [RH, Score=363, Expect=3e-123]; ENSG00000005882, PDK2, pyruvate dehydrogenase kinase 2, [RH, Score=358, Expect=5e-121]; ENSG00000004799, PDK4, pyruvate dehydrogenase kinase 4, [RH, Score=356, Expect=5e-120]; ENSG00000152256, PDK1, pyruvate dehydrogenase kinase 1, [RH, Score=345, Expect=1e-115]} {Mouse: ENSMUSG00000035232, Pdk3, pyruvate dehydrogenase kinase, isoenzyme 3, [RH, Score=364, Expect=2e-123]; ENSMUSG00000038967, Pdk2, pyruvate dehydrogenase kinase, isoenzyme 2, [RH, Score=355, Expect=8e-120]; ENSMUSG00000019577, Pdk4, pyruvate dehydrogenase kinase, isoenzyme 4, [RH, Score=352, Expect=1e-118]; ENSMUSG00000006494, Pdk1, pyruvate dehydrogenase kinase, isoenzyme 1, [RH, Score=350, Expect=9e-118]} {Dmel: FBgn0017558, Pdk, Pyruvate dehydrogenase kinase, [RH, Score=403, Expect=9e-139]} {Celegans: WBGene00022719, pdhk-2, Probable [pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial, [RH, Score=357, Expect=4e-121]} {Smed: dd_Smed_v6_8596_0_1, dd_Smed_v6_8596_0_1, [RH, Score=387, Expect=3e-133]} {RNA1509_11479, RNA1509_44060, RNA1509_51757} {RNA1310_20044, RNA1509_11479, RNA1509_44060, RNA1509_51757} {RNA1509_11479, RNA1509_44060, RNA1509_51757, RNA815_9273}
3.	MligTC455_37500	211	4.39	Mlig455_001761	Neo: - Age: -	TCP11L1	1.673	0.952	-	-	-	-	0.721	Mlig455_001761 {REF} {Length: 3146} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=21.3} {Pfam: T-complex protein 11 [PF05794.15, score=268.0]} {Human: ENSG00000176148, TCP11L1, t-complex 11 like 1, [Score=211, Expect=1e-61]} {Mouse: ENSMUSG00000027175, Tcp11l1, t-complex 11 like 1, [Score=194, Expect=2e-55]} {Dmel: FBgn0029820, CG16721, [Score=159, Expect=9e-43]} {Celegans: WBGene00010875, M05D6.2, [Score=139, Expect=2e-35]} {Smed: dd_Smed_v6_5716_0_1, dd_Smed_v6_5716_0_1, [Score=266, Expect=1e-83]} {RNA1509_8188} {RNA1310_5531} {RNA815_7084}
4.	MligTC455_51068	640	13.33	Mlig455_047605	Neo: - Age: - Region-enriched R3: 1.450/0.00092		0.957	-	-	-	-	-	0.957	Mlig455_047605 {REF} {Length: 2440} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=26.2]} {Smed: dd_Smed_v6_2114_0_1, dd_Smed_v6_2114_0_1, [RH, Score=132, Expect=2e-36]} {RNA1509_4047} {RNA1310_27835.1} {RNA815_11823}
5.	MligTC455_27600	731	15.23	Mlig455_069727	Neo: Int S/G2/M Age: -	RCC2	0.955	-	-	0.955	-	-	-	Mlig455_069727 {REF} {Length: 3359} {TRANSSPLICED} {Pfam: Regulator of chromosome condensation (RCC1) repeat [PF00415.20, score=154.0]; Regulator of chromosome condensation (RCC1) repeat [PF13540.8, score=76.4]} {Human: ENSG00000179051, RCC2, regulator of chromosome condensation 2, [RH, Score=279, Expect=7e-87]; ENSG00000281540, RCC2, regulator of chromosome condensation 2, [RH, Score=279, Expect=7e-87]} {Mouse: ENSMUSG00000040945, Rcc2, regulator of chromosome condensation 2, [RH, Score=279, Expect=4e-87]} {Dmel: FBgn0031769, CG9135, [RH, Score=292, Expect=7e-93]} {Celegans: WBGene00021685, herc-1, HECT and RCC domain E3 ubiquitin ligase, [Score=92.4, Expect=2e-19]} {Smed: dd_Smed_v6_8701_0_1, dd_Smed_v6_8701_0_1, [Score=114, Expect=1e-26]} {RNA1509_17324} {RNA1310_9612.1} {RNA815_2948.1}
6.	MligTC455_43668	923	19.23	Mlig455_032057	Neo: Int S/G2/M Age: -	LAMTOR3	0.951	-	-	-	-	-	0.951	Mlig455_032057 {REF} {Length: 1404} {TRANSSPLICED} {Pfam: Mitogen-activated protein kinase kinase 1 interacting [PF08923.12, score=83.6]} {Human: ENSG00000109270, LAMTOR3, late endosomal/lysosomal adaptor, MAPK and MTOR activator 3, [RH, Score=71.6, Expect=3e-16]} {Mouse: ENSMUSG00000091512, Lamtor3, late endosomal/lysosomal adaptor, MAPK and MTOR activator 3, [RH, Score=68.9, Expect=2e-15]} {RNA1509_22482, RNA1509_32680, RNA1509_33180, RNA1509_53475} {RNA1310_37315.1, RNA1509_22482, RNA1509_32680, RNA1509_33180, RNA1509_53475} {RNA1509_22482, RNA1509_32680, RNA1509_33180, RNA1509_53475, RNA815_4846}

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