M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_03783

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_03783 17 0.35 Mlig455_016031

Neo: -

Age: -

 Mlig455_016031 {REF} {Length: 1606} {NoTransDecoderORF} {RNA1310_73098} {RNA815_38003}

Cumulative graph for MligTC455_03783

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_03783

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_03783 17 0.35 Mlig455_016031

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_016031 {REF} {Length: 1606} {NoTransDecoderORF} {RNA1310_73098} {RNA815_38003}
2. MligTC455_45942 18 0.37 Mlig455_028863

Neo: -

Age: -

 0.991 - - - - 0.991 - Mlig455_028863 {REF} {Length: 1187} {Pfam: Receptor family ligand binding region [PF01094.30, score=44.8]}
3. MligTC455_23598 236 4.92 Mlig455_025573

Neo: -

Age: Up-Down-Down

Region-enriched R8: 3.347/0.00904

Regeneration-downregulated BL: -7.152

Regeneration-depleted BL: -7.152

 FBN1 0.99 - - - - 0.990 - Mlig455_025573 {REF} {Length: 8300} {Pfam: Calcium-binding EGF domain [PF07645.17, score=308.8]; Complement Clr-like EGF-like [PF12662.9, score=240.6]; Coagulation Factor Xa inhibitory site [PF14670.8, score=137.8]; EGF domain [PF12947.9, score=103.1]; EGF-like domain [PF00008.29, score=67.3]; Human growth factor-like EGF [PF12661.9, score=42.0]; Thrombospondin type 1 domain [PF00090.21, score=27.9]; MSP1 EGF domain 1 [PF12946.9, score=23.5]} {Human: ENSG00000166147, FBN1, fibrillin 1, [Score=274, Expect=5e-73]; ENSG00000138829, FBN2, fibrillin 2, [Score=265, Expect=2e-70]; ENSG00000142449, FBN3, fibrillin 3, [Score=263, Expect=1e-69]} {Mouse: ENSMUSG00000027204, Fbn1, fibrillin 1, [Score=291, Expect=2e-78]} {Dmel: FBgn0035798, frac, faulty attraction, [RH, Score=235, Expect=8e-62]} {Celegans: WBGene00001403, fbl-1, Fibulin-1, [Score=165, Expect=2e-41]} {Smed: dd_Smed_v6_2649_0_2, dd_Smed_v6_2649_0_2, [Score=292, Expect=8e-79]} {RNA1509_13106} {RNA1310_487} {RNA815_5734}
4. MligTC455_06227 228 4.75 Mlig455_036666, Mlig455_036679

Neo: -

Age: -

 0.986 - - - - 0.986 -

Mlig455_036666 {REF} {Length: 780} {RNA1310_112949}

Mlig455_036679 {REF} {Length: 4100} {RNA1310_79588}
5. MligTC455_54199 49 1.01 Mlig455_034715, Mlig455_067590

Neo: -

Age: -

Region-enriched R4: 5.064/0.03900

Regeneration-downregulated R4: -6.361

Regeneration-depleted R4: -6.361

 0.983 - - - - 0.983 -

Mlig455_034715 {REF} {Length: 5399} {Pfam: PMP-22/EMP/MP20/Claudin family [PF00822.22, score=41.4]} {Smed: dd_Smed_v6_16515_0_1, dd_Smed_v6_16515_0_1, [Score=94.4, Expect=2e-21]} {RNA1310_64595} {RNA815_44335}

Mlig455_067590 {REF} {Length: 3463} {Pfam: PMP-22/EMP/MP20/Claudin family [PF00822.22, score=27.2]} {Smed: dd_Smed_v6_20712_0_1, dd_Smed_v6_20712_0_1, [Score=74.3, Expect=5e-15]} {RNA1310_64595} {RNA815_44335}
6. MligTC455_29465 590 12.3 Mlig455_032544

Neo: -

Age: -

 MADD 0.975 - - - - 0.975 - Mlig455_032544 {REF} {Length: 6532} {Human: ENSG00000110514, MADD, MAP kinase activating death domain, [Score=384, Expect=2e-116]} {Mouse: ENSMUSG00000040687, Madd, MAP-kinase activating death domain, [Score=386, Expect=9e-118]} {Dmel: FBgn0030613, Rab3-GEF, Rab3 GDP-GTP exchange factor, [Score=325, Expect=1e-95]} {Celegans: WBGene00000086, aex-3, MAP kinase-activating death domain protein, [Score=266, Expect=6e-76]} {Smed: dd_Smed_v6_8355_0_5, dd_Smed_v6_8355_0_5, [Score=322, Expect=7e-99]} {RNA1509_28698} {RNA1310_18046, RNA1509_28698} {RNA1509_28698, RNA815_6666}
7. MligTC455_42351 126 2.62 Mlig455_014089

Neo: -

Age: Up-Down-Down

 BMP1 0.975 - - - - 0.975 - Mlig455_014089 {REF} {Length: 6334} {Pfam: CUB domain [PF00431.22, score=147.3]} {Human: ENSG00000168487, BMP1, bone morphogenetic protein 1, [Score=107, Expect=7e-23]} {Mouse: ENSMUSG00000053626, Tll1, tolloid-like, [Score=97.8, Expect=3e-20]; ENSMUSG00000025013, Tll2, tolloid-like 2, [Score=95.9, Expect=1e-19]} {Dmel: FBgn0261262, CG42613, [Score=274, Expect=4e-77]} {Celegans: WBGene00002977, lev-10, LEV-10B, [Score=235, Expect=6e-65]} {Smed: dd_Smed_v6_11447_0_1, dd_Smed_v6_11447_0_1, [Score=401, Expect=2e-123]} {RNA1509_7178} {RNA1310_25466} {RNA815_477.1}
8. MligTC455_51685 1772 36.92 Mlig455_014570, Mlig455_070254

Neo: -

Age: logFC(26M/2M)=-0.509

 0.975 - - - - 0.975 -

Mlig455_014570 {REF} {Length: 1094} {RNA1509_14433, RNA1509_47733} {RNA1310_36028, RNA1509_47733} {RNA1509_47733, RNA815_17484}

Mlig455_070254 {REF} {Length: 1092} {RNA1509_14433, RNA1509_33461} {RNA1310_36028, RNA1509_14433, RNA1509_33461} {RNA1509_14433, RNA1509_33461, RNA815_17484}
9. MligTC455_51445 198 4.13 Mlig455_026524

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_026524 {REF} {Length: 1888} {RNA1509_20584} {RNA1310_9709.1, RNA1509_20584} {RNA1509_20584, RNA815_5646}
10. MligTC455_27623 200 4.16 Mlig455_002045

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.053

Region-enriched R4: 3.078/0.02574

 0.973 - - - - 0.973 - Mlig455_002045 {REF} {Length: 1355} {RNA1509_31776} {RNA1310_7321.1} {RNA815_4667}
11. MligTC455_02138 24 0.5 Mlig455_033229

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_033229 {REF} {Length: 823} {NoTransDecoderORF} {RNA1509_51350} {RNA1310_73607.2} {RNA815_19357}
12. MligTC455_28046 217 4.52 Mlig455_054081

Neo: -

Age: Down-Down-Up

 0.965 - - - - 0.965 - Mlig455_054081 {REF} {Length: 2315} {RNA1509_14175} {RNA1310_16956} {RNA815_8462}
13. MligTC455_18919 730 15.22 Mlig455_025673

Neo: -

Age: logFC(26M/2M)=-0.315

 MLX 0.964 - - - - 0.964 - Mlig455_025673 {REF} {Length: 1841} {TRANSSPLICED} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=36.9]} {Human: ENSG00000108788, MLX, MLX, MAX dimerization protein, [Score=106, Expect=5e-28]} {Mouse: ENSMUSG00000017801, Mlx, MAX-like protein X, [Score=106, Expect=5e-28]} {Dmel: FBgn0039509, bigmax, [Score=116, Expect=9e-32]} {Smed: dd_Smed_v6_3140_0_1, dd_Smed_v6_3140_0_1, [Score=111, Expect=3e-29]} {RNA1509_22417, RNA1509_45219, RNA1509_55056} {RNA1310_22971, RNA1509_22417, RNA1509_45219, RNA1509_55056} {RNA1509_22417, RNA1509_45219, RNA1509_55056, RNA815_20335}
14. MligTC455_22570 261 5.44 Mlig455_006659

Neo: -

Age: -

Region-enriched R2: 3.042/0.02689

 0.964 - - - - 0.964 - Mlig455_006659 {REF} {Length: 918} {NoTransDecoderORF} {RNA1509_10005} {RNA1310_56340} {RNA815_38610}
15. MligTC455_23599 300 6.25 Mlig455_025579

Neo: -

Age: Up-Down-Down

Region-enriched R8: 3.645/0.00082

 FBN2 0.964 - - - - 0.964 - Mlig455_025579 {REF} {Length: 10696} {Pfam: Calcium-binding EGF domain [PF07645.17, score=312.2]; Complement Clr-like EGF-like [PF12662.9, score=241.1]; Coagulation Factor Xa inhibitory site [PF14670.8, score=125.1]; EGF domain [PF12947.9, score=95.9]; EGF-like domain [PF00008.29, score=59.7]; Human growth factor-like EGF [PF12661.9, score=47.9]; Thrombospondin type 1 domain [PF00090.21, score=28.9]; MSP1 EGF domain 1 [PF12946.9, score=21.3]} {Human: ENSG00000138829, FBN2, fibrillin 2, [Score=250, Expect=2e-65]; ENSG00000166147, FBN1, fibrillin 1, [Score=248, Expect=1e-64]; ENSG00000142449, FBN3, fibrillin 3, [Score=243, Expect=3e-63]} {Mouse: ENSMUSG00000024598, Fbn2, fibrillin 2, [Score=253, Expect=1e-66]; ENSMUSG00000027204, Fbn1, fibrillin 1, [Score=251, Expect=5e-66]} {Dmel: FBgn0035798, frac, faulty attraction, [RH, Score=238, Expect=3e-62]} {Celegans: WBGene00001403, fbl-1, Fibulin-1, [Score=192, Expect=3e-50]} {Smed: dd_Smed_v6_2649_0_2, dd_Smed_v6_2649_0_2, [Score=294, Expect=3e-79]} {RNA1509_13106} {RNA1310_487} {RNA815_5734}
16. MligTC455_12048 141 2.95 Mlig455_032190, Mlig455_051443

Neo: -

Age: -

 METAP1 0.963 - - - - 0.963 -

Mlig455_032190 {REF} {Length: 2315} {Pfam: Metallopeptidase family M24 [PF00557.26, score=180.5]; zf-MYND-like zinc finger, mRNA-binding [PF15801.7, score=64.9]} {Human: ENSG00000164024, METAP1, methionyl aminopeptidase 1, [RH, Score=468, Expect=2e-164]} {Mouse: ENSMUSG00000005813, Metap1, methionyl aminopeptidase 1, [RH, Score=464, Expect=2e-163]} {Dmel: FBgn0039219, CG13630, [RH, Score=481, Expect=4e-170]} {Celegans: WBGene00003129, map-1, Methionine AminoPeptidase, [RH, Score=446, Expect=1e-156]} {Smed: dd_Smed_v6_3555_0_1, dd_Smed_v6_3555_0_1, [RH, Score=507, Expect=2e-180]} {RNA1509_41540} {RNA1310_18545} {RNA815_38494.1}

Mlig455_051443 {REF} {Length: 2310} {Pfam: Metallopeptidase family M24 [PF00557.26, score=180.5]; zf-MYND-like zinc finger, mRNA-binding [PF15801.7, score=67.1]; MYND finger [PF01753.20, score=19.0]} {Human: ENSG00000164024, METAP1, methionyl aminopeptidase 1, [RH, Score=469, Expect=3e-165]} {Mouse: ENSMUSG00000005813, Metap1, methionyl aminopeptidase 1, [RH, Score=467, Expect=2e-164]} {Dmel: FBgn0039219, CG13630, [RH, Score=484, Expect=2e-171]} {Celegans: WBGene00003129, map-1, Methionine AminoPeptidase, [RH, Score=449, Expect=6e-158]} {Smed: dd_Smed_v6_3555_0_1, dd_Smed_v6_3555_0_1, [RH, Score=512, Expect=0.0]} {RNA1509_41540} {RNA1310_18545, RNA1509_41540} {RNA1509_41540, RNA815_38494.1}
17. MligTC455_52828 101 2.1 Mlig455_043078

Neo: -

Age: Down-Up-Down

 TTLL11 0.963 - - - - 0.963 - Mlig455_043078 {REF} {Length: 3068} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=172.6]; Sugar-transfer associated ATP-grasp [PF14397.8, score=19.6]; YheC/D like ATP-grasp [PF14398.8, score=18.1]} {Human: ENSG00000175764, TTLL11, tubulin tyrosine ligase like 11, [RH, Score=360, Expect=2e-112]} {Mouse: ENSMUSG00000026885, Ttll11, tubulin tyrosine ligase-like family, member 11, [RH, Score=368, Expect=1e-116]} {Dmel: FBgn0039501, CG5987, [Score=186, Expect=2e-49]} {Celegans: WBGene00019230, ttll-11, Tubulin Tyrosine Ligase Like, [Score=254, Expect=6e-75]} {Smed: dd_Smed_v6_13822_0_1, dd_Smed_v6_13822_0_1, [Score=418, Expect=6e-133]} {RNA1509_30534} {RNA1310_2777.2} {RNA815_1815.1}
18. MligTC455_45703 433 9.03 Mlig455_018343

Neo: -

Age: -

Region-enriched R2: 1.674/0.02931

 ADAM12 0.96 - - - - 0.960 - Mlig455_018343 {REF} {Length: 4207} {Pfam: Reprolysin (M12B) family zinc metalloprotease [PF01421.21, score=123.1]; Disintegrin [PF00200.25, score=73.1]; Metallo-peptidase family M12 [PF13688.8, score=48.1]; Metallo-peptidase family M12B Reprolysin-like [PF13574.8, score=40.5]; ADAM cysteine-rich [PF08516.14, score=39.9]; Metallo-peptidase family M12B Reprolysin-like [PF13582.8, score=39.4]; Metallo-peptidase family M12B Reprolysin-like [PF13583.8, score=37.8]} {Human: ENSG00000148848, ADAM12, ADAM metallopeptidase domain 12, [Score=231, Expect=4e-64]; ENSG00000149451, ADAM33, ADAM metallopeptidase domain 33, [Score=230, Expect=2e-63]; ENSG00000168615, ADAM9, ADAM metallopeptidase domain 9, [Score=229, Expect=9e-64]; ENSG00000139985, ADAM21, ADAM metallopeptidase domain 21, [Score=224, Expect=1e-61]; ENSG00000069206, ADAM7, ADAM metallopeptidase domain 7, [Score=222, Expect=1e-60]; ENSG00000042980, ADAM28, ADAM metallopeptidase domain 28, [Score=222, Expect=1e-60]} {Mouse: ENSMUSG00000054555, Adam12, a disintegrin and metallopeptidase domain 12 (meltrin alpha), [Score=228, Expect=3e-62]; ENSMUSG00000014725, Adam28, a disintegrin and metallopeptidase domain 28, [Score=226, Expect=4e-62]; ENSMUSG00000031555, Adam9, a disintegrin and metallopeptidase domain 9 (meltrin gamma), [Score=224, Expect=3e-61]} {Dmel: FBgn0265140, Meltrin, [Score=247, Expect=1e-68]} {Celegans: WBGene00000074, adm-2, ADAM (Disintegrin plus metalloprotease) family, [Score=219, Expect=3e-59]} {Smed: dd_Smed_v6_5143_0_1, dd_Smed_v6_5143_0_1, [Score=222, Expect=6e-60]} {RNA1509_54780, RNA1509_7145} {RNA1310_4464.2, RNA1509_54780} {RNA1509_54780, RNA815_1440.1}
19. MligTC455_09493 22 0.46 Mlig455_049510

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_049510 {REF} {Length: 2020} {NoTransDecoderORF} {RNA1509_52931} {RNA1310_54990} {RNA815_38253.1}
20. MligTC455_42693 531 11.07 Mlig455_023359, Mlig455_046943

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_023359 {REF} {Length: 1975} {TRANSSPLICED} {Smed: dd_Smed_v6_14631_0_1, dd_Smed_v6_14631_0_1, [RH, Score=66.2, Expect=5e-12]} {RNA1509_22410} {RNA1310_11875.1, RNA1509_22410} {RNA1509_22410, RNA815_20844}

Mlig455_046943 {REF} {Length: 1974} {TRANSSPLICED} {Smed: dd_Smed_v6_14631_0_1, dd_Smed_v6_14631_0_1, [RH, Score=66.6, Expect=3e-12]} {RNA1509_22410} {RNA1310_11875.1} {RNA815_20844}
21. MligTC455_43451 2312 48.16 Mlig455_006679, Mlig455_006729

Neo: -

Age: Down-Up-Down

 0.954 - - - - 0.954 -

Mlig455_006679 {REF} {Length: 1801} {RNA1509_30562, RNA1509_31928} {RNA1310_18324, RNA1509_30562, RNA1509_31928} {RNA1509_30562, RNA1509_31928, RNA815_16556}

Mlig455_006729 {REF} {Length: 1812} {RNA1509_30562, RNA1509_41495} {RNA1310_18324, RNA1509_41495} {RNA1509_41495, RNA815_16556}
22. MligTC455_50664 138 2.87 Mlig455_035152

Neo: -

Age: -

Region-enriched R2: 3.712/0.01441

 LRRC74A 0.953 - - - - 0.953 - Mlig455_035152 {REF} {Length: 2523} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=68.7]; Leucine Rich Repeat [PF00560.35, score=35.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=31.8]; Leucine rich repeat [PF13855.8, score=22.7]} {Human: ENSG00000100565, LRRC74A, leucine rich repeat containing 74A, [Score=146, Expect=1e-37]; ENSG00000187905, LRRC74B, leucine rich repeat containing 74B, [Score=144, Expect=1e-37]} {Mouse: ENSMUSG00000059114, Lrrc74a, leucine rich repeat containing 74A, [Score=147, Expect=5e-38]; ENSMUSG00000022759, Lrrc74b, leucine rich repeat containing 74B, [Score=144, Expect=1e-37]} {Dmel: FBgn0033212, LRR, Leucine-rich repeat, [Score=51.6, Expect=2e-06]} {Celegans: WBGene00009201, F28C1.3, Protein phosphatase 1 regulatory subunit 37 homolog, [Score=55.5, Expect=8e-08]} {Smed: dd_Smed_v6_14506_0_1, dd_Smed_v6_14506_0_1, [Score=147, Expect=6e-38]} {RNA1509_21228} {RNA1310_12842} {RNA815_17243}
23. MligTC455_29237 1849 38.51 Mlig455_061754

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.515

Region-enriched R2: 1.588/0.01616

 ABCA1 0.952 - - - - 0.952 - Mlig455_061754 {REF} {Length: 8294} {TRANSSPLICED} {Pfam: ABC transporter [PF00005.29, score=184.8]; ABC-2 family transporter protein [PF12698.9, score=179.3]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=68.8]; AAA domain [PF13476.8, score=23.8]} {Human: ENSG00000165029, ABCA1, ATP binding cassette subfamily A member 1, [RH, Score=1255, Expect=0.0]} {Mouse: ENSMUSG00000015243, Abca1, ATP-binding cassette, sub-family A (ABC1), member 1, [RH, Score=1262, Expect=0.0]} {Dmel: FBgn0031170, CG1718, [Score=455, Expect=1e-130]} {Celegans: WBGene00000022, abt-4, ABC Transporter family, [Score=391, Expect=5e-110]} {Smed: dd_Smed_v6_2300_0_2, dd_Smed_v6_2300_0_2, [RH, Score=1169, Expect=0.0]} {RNA1509_742} {RNA1310_526.1} {RNA815_69.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA