M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_04117

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_04117 310 6.45 Mlig455_019700

Neo: -

Age: -

 GLCE Mlig455_019700 {REF} {Length: 4930} {TRANSSPLICED} {Pfam: D-glucuronyl C5-epimerase C-terminus [PF06662.15, score=142.0]} {Human: ENSG00000138604, GLCE, glucuronic acid epimerase, [RH, Score=173, Expect=1e-44]} {Mouse: ENSMUSG00000032252, Glce, glucuronyl C5-epimerase, [RH, Score=174, Expect=3e-45]} {Dmel: FBgn0033087, Hsepi, Heparan sulfate C5-epimerase, [RH, Score=178, Expect=8e-47]} {Celegans: WBGene00002003, hse-5, D-glucuronyl C5-epimerase, [RH, Score=171, Expect=1e-44]} {Smed: dd_Smed_v6_10357_0_1, dd_Smed_v6_10357_0_1, [RH, Score=151, Expect=3e-38]} {RNA1509_13293, RNA1509_23264} {RNA1310_9347, RNA1509_23264} {RNA1509_23264, RNA815_9339}

Cumulative graph for MligTC455_04117

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.213 3.199 0.89445 1.00000
RegionR2 -0.426 3.199 0.48537 0.86841
RegionR3 0.321 3.199 0.45963 0.96959
RegionR4 0.461 3.199 0.42153 0.74986
RegionR5 0.181 3.199 0.65666 1.00000
RegionR6 -0.936 3.199 0.08225 0.53019
RegionR7 -0.257 3.199 0.70336 1.00000
RegionR8 0.441 3.199 0.55024 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.591 3.199 0.80883 1.00000
RegenerationR2 0.907 3.199 0.03699 0.31792
RegenerationR3 0.037 3.199 0.94024 1.00000
RegenerationR4 0.586 3.199 0.27058 0.71658
RegenerationR5 0.834 3.199 0.05629 0.37944
RegenerationR6 0.501 3.199 0.41448 0.74720
RegenerationBL 0.209 3.199 0.77631 1.00000
RegenerationTP -0.677 3.199 0.37815 0.81333


Genes with expression patterns similar to MligTC455_04117

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_04117 310 6.45 Mlig455_019700

Neo: -

Age: -

 GLCE 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_019700 {REF} {Length: 4930} {TRANSSPLICED} {Pfam: D-glucuronyl C5-epimerase C-terminus [PF06662.15, score=142.0]} {Human: ENSG00000138604, GLCE, glucuronic acid epimerase, [RH, Score=173, Expect=1e-44]} {Mouse: ENSMUSG00000032252, Glce, glucuronyl C5-epimerase, [RH, Score=174, Expect=3e-45]} {Dmel: FBgn0033087, Hsepi, Heparan sulfate C5-epimerase, [RH, Score=178, Expect=8e-47]} {Celegans: WBGene00002003, hse-5, D-glucuronyl C5-epimerase, [RH, Score=171, Expect=1e-44]} {Smed: dd_Smed_v6_10357_0_1, dd_Smed_v6_10357_0_1, [RH, Score=151, Expect=3e-38]} {RNA1509_13293, RNA1509_23264} {RNA1310_9347, RNA1509_23264} {RNA1509_23264, RNA815_9339}
2. MligTC455_04116 732 15.25 Mlig455_004958

Neo: -

Age: -

 2.674 - 0.858 - 0.857 - 0.959 Mlig455_004958 {REF} {Length: 91} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24806} {RNA1310_74040} {RNA815_29739}
3. MligTC455_49712 1937 40.36 Mlig455_003035

Neo: -

Age: Up-Down-Down

Region-enriched R4: 1.123/0.00246

 GALE 0.968 - - - - - 0.968 Mlig455_003035 {REF} {Length: 2329} {TRANSSPLICED} {Pfam: GDP-mannose 4,6 dehydratase [PF16363.7, score=200.7]; NAD dependent epimerase/dehydratase family [PF01370.23, score=183.7]; 3-beta hydroxysteroid dehydrogenase/isomerase family [PF01073.21, score=64.0]; Polysaccharide biosynthesis protein [PF02719.17, score=62.2]; RmlD substrate binding domain [PF04321.19, score=50.0]; NAD(P)H-binding [PF13460.8, score=35.7]; Male sterility protein [PF07993.14, score=35.5]; short chain dehydrogenase [PF00106.27, score=30.5]; KR domain [PF08659.12, score=29.3]; NmrA-like family [PF05368.15, score=18.7]} {Human: ENSG00000117308, GALE, UDP-galactose-4-epimerase, [RH, Score=454, Expect=7e-161]} {Mouse: ENSMUSG00000028671, Gale, galactose-4-epimerase, UDP, [RH, Score=454, Expect=6e-161]} {Dmel: FBgn0035147, Gale, UDP-galactose 4'-epimerase, [RH, Score=430, Expect=1e-151]} {Celegans: WBGene00008132, gale-1, UDP-GALactose 4-Epimerase, [RH, Score=415, Expect=8e-146]} {Smed: dd_Smed_v6_1201_0_1, dd_Smed_v6_1201_0_1, [RH, Score=432, Expect=1e-152]} {RNA1509_23959, RNA1509_8326} {RNA1310_16764.2, RNA1509_23959, RNA1509_8326} {RNA1509_23959, RNA1509_8326, RNA815_12053}
4. MligTC455_25314 18 0.39 Mlig455_004144, Mlig455_019456

Neo: -

Age: Down-Down-Up

Region-enriched R4: 5.385/0.00156

 MYRF 0.964 - - - - 0.964 -

Mlig455_004144 {REF} {Length: 3239} {Pfam: NDT80 / PhoG like DNA-binding family [PF05224.14, score=61.0]; Myelin regulatory factor ICA domain [PF13887.8, score=56.4]; Chaperone of endosialidase [PF13884.8, score=26.5]} {Human: ENSG00000124920, MYRF, myelin regulatory factor, [Score=243, Expect=3e-66]} {Mouse: ENSMUSG00000036098, Myrf, myelin regulatory factor, [Score=238, Expect=1e-64]} {Dmel: FBgn0034985, CG3328, [Score=234, Expect=2e-63]} {Celegans: WBGene00004134, myrf-1, Myelin regulatory factor related, [RH, Score=164, Expect=3e-41]} {RNA1509_8962} {RNA1310_4590.2, RNA1509_8962} {RNA1509_8962, RNA815_1404}

Mlig455_019456 {REF} {Length: 3217} {Pfam: NDT80 / PhoG like DNA-binding family [PF05224.14, score=61.0]; Myelin regulatory factor ICA domain [PF13887.8, score=56.4]; Chaperone of endosialidase [PF13884.8, score=26.5]} {Human: ENSG00000124920, MYRF, myelin regulatory factor, [Score=243, Expect=3e-66]} {Mouse: ENSMUSG00000036098, Myrf, myelin regulatory factor, [Score=238, Expect=1e-64]} {Dmel: FBgn0034985, CG3328, [Score=234, Expect=2e-63]} {Celegans: WBGene00004134, myrf-1, Myelin regulatory factor related, [RH, Score=164, Expect=2e-41]} {RNA1509_8962} {RNA1310_4590.2} {RNA815_1404}
5. MligTC455_29417 16 0.34 Mlig455_056308

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_056308 {REF} {Length: 1802} {Pfam: C2 domain [PF00168.32, score=68.7]} {RNA1310_31782} {RNA815_14404}
6. MligTC455_03432 21 0.45 Mlig455_053787

Neo: Int S/G2/M

Age: -

 0.952 - - - - 0.952 - Mlig455_053787 {REF} {Length: 1808} {RNA1509_22149, RNA1509_58324} {RNA1310_32048, RNA1509_58324} {RNA1509_58324, RNA815_12368}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA