TomoSeq data search

Data search

Results for MligTC455_04205

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_04205

259

5.40

Mlig455_005959

Neo: Int S/G2/M

Age: logFC(26M/2M)=-0.672

ZNF569

Mlig455_005959 {REF} {Length: 4659} {Pfam: C2H2-type zinc finger [PF13894.8, score=86.2]; Zinc finger, C2H2 type [PF00096.28, score=60.4]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=29.2]; Zinc-finger double domain [PF13465.8, score=26.2]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=24.4]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=22.5]} {Human: ENSG00000196437, ZNF569, zinc finger protein 569, [Score=78.6, Expect=3e-14]} {Mouse: ENSMUSG00000096916, Zfp850, zinc finger protein 850, [Score=76.6, Expect=1e-13]} {Dmel: FBgn0037120, CG11247, [Score=50.1, Expect=8e-06]} {Smed: dd_Smed_v6_10676_0_1, dd_Smed_v6_10676_0_1, [Score=52.4, Expect=8e-07]} {RNA1509_25692, RNA1509_41} {RNA1310_4035.1, RNA1509_41} {RNA1509_41, RNA815_2236}

Cumulative graph for MligTC455_04205

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.893	2.96	0.14803	0.76159
RegionR2	0.365	2.96	0.68128	1.00000
RegionR3	0.812	2.96	0.34042	0.87728
RegionR4	1.913	2.96	0.01659	0.08906
RegionR5	0.928	2.96	0.24818	0.56319
RegionR6	1.366	2.96	0.06469	0.47673
RegionR7	-0.716	2.96	0.97415	1.00000
RegionR8	1.225	2.96	0.24239	0.85920

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.222	2.96	1.00000	1.00000
RegenerationR2	0.127	2.96	0.78218	0.98392
RegenerationR3	-0.294	2.96	0.58032	0.89892
RegenerationR4	-0.796	2.96	0.15466	0.58511
RegenerationR5	-0.196	2.96	0.68920	0.94761
RegenerationR6	0.048	2.96	0.92646	1.00000
RegenerationBL	-0.566	2.96	0.47497	0.84093
RegenerationTP	0.091	2.96	0.90562	1.00000

Genes with expression patterns similar to MligTC455_04205

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_04205	259	5.4	Mlig455_005959	Neo: Int S/G2/M Age: logFC(26M/2M)=-0.672	ZNF569	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_005959 {REF} {Length: 4659} {Pfam: C2H2-type zinc finger [PF13894.8, score=86.2]; Zinc finger, C2H2 type [PF00096.28, score=60.4]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=29.2]; Zinc-finger double domain [PF13465.8, score=26.2]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=24.4]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=22.5]} {Human: ENSG00000196437, ZNF569, zinc finger protein 569, [Score=78.6, Expect=3e-14]} {Mouse: ENSMUSG00000096916, Zfp850, zinc finger protein 850, [Score=76.6, Expect=1e-13]} {Dmel: FBgn0037120, CG11247, [Score=50.1, Expect=8e-06]} {Smed: dd_Smed_v6_10676_0_1, dd_Smed_v6_10676_0_1, [Score=52.4, Expect=8e-07]} {RNA1509_25692, RNA1509_41} {RNA1310_4035.1, RNA1509_41} {RNA1509_41, RNA815_2236}
2.	MligTC455_04204	293	6.11	Mlig455_005956	Neo: - Age: Down-Up-Up	ZNF569	5.686	0.998	0.993	1.000	0.998	0.774	0.923	Mlig455_005956 {REF} {Length: 4556} {Pfam: C2H2-type zinc finger [PF13894.8, score=70.9]; Zinc finger, C2H2 type [PF00096.28, score=48.6]; Zinc-finger double domain [PF13465.8, score=27.7]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=27.2]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=20.9]; Zinc-fingers and homeoboxes C2H2 finger domain [PF18387.3, score=20.5]} {Human: ENSG00000196437, ZNF569, zinc finger protein 569, [Score=80.1, Expect=8e-15]} {Mouse: ENSMUSG00000096916, Zfp850, zinc finger protein 850, [Score=77.0, Expect=5e-14]; ENSMUSG00000033669, Zfp7, zinc finger protein 7, [Score=73.6, Expect=7e-13]} {Dmel: FBgn0037120, CG11247, [Score=50.8, Expect=4e-06]} {Smed: dd_Smed_v6_10676_0_1, dd_Smed_v6_10676_0_1, [Score=52.8, Expect=4e-07]} {RNA1509_25692} {RNA1310_4035.1} {RNA815_2236}
3.	MligTC455_24570	111	2.32	Mlig455_028864	Neo: - Age: Up-Up-Down	SCNN1A	2.442	0.728	-	0.726	-	0.988	-	Mlig455_028864 {REF} {Length: 5288} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=176.7]} {Human: ENSG00000111319, SCNN1A, sodium channel epithelial 1 alpha subunit, [Score=55.1, Expect=2e-07]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=62.4, Expect=5e-10]} {Smed: dd_Smed_v6_23028_0_1, dd_Smed_v6_23028_0_1, [Score=255, Expect=3e-76]} {RNA1310_33448.1} {RNA815_16256}
4.	MligTC455_31474	1403	29.23	Mlig455_066249, Mlig455_066266	Neo: - Age: Down-Up-Down Regeneration-enriched TP: 6.671 Regeneration-enriched BL: 5.974	NR1H3	0.974	-	-	-	0.974	-	-	Mlig455_066249 {REF} {Length: 3399} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=74.8]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=28.4]} {Human: ENSG00000025434, NR1H3, nuclear receptor subfamily 1 group H member 3, [Score=155, Expect=4e-41]} {Mouse: ENSMUSG00000002108, Nr1h3, nuclear receptor subfamily 1, group H, member 3, [Score=151, Expect=9e-40]; ENSMUSG00000021779, Thrb, thyroid hormone receptor beta, [Score=147, Expect=5e-38]} {Dmel: FBgn0015240, Hr96, Hormone receptor-like in 96, [RH, Score=129, Expect=2e-31]} {Celegans: WBGene00003638, nhr-48, Nuclear hormone receptor family member nhr-48, [RH, Score=125, Expect=4e-30]} {Smed: dd_Smed_v6_11714_0_1, dd_Smed_v6_11714_0_1, [Score=104, Expect=7e-24]} {RNA1509_34379} {RNA1310_14681.1} {RNA815_23041} Mlig455_066266 {REF} {Length: 3380} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=74.8]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=28.4]} {Human: ENSG00000025434, NR1H3, nuclear receptor subfamily 1 group H member 3, [Score=155, Expect=8e-41]} {Mouse: ENSMUSG00000002108, Nr1h3, nuclear receptor subfamily 1, group H, member 3, [Score=150, Expect=2e-39]; ENSMUSG00000021779, Thrb, thyroid hormone receptor beta, [Score=146, Expect=7e-38]} {Dmel: FBgn0015240, Hr96, Hormone receptor-like in 96, [RH, Score=129, Expect=2e-31]} {Celegans: WBGene00003638, nhr-48, Nuclear hormone receptor family member nhr-48, [RH, Score=125, Expect=4e-30]} {Smed: dd_Smed_v6_11714_0_1, dd_Smed_v6_11714_0_1, [Score=105, Expect=5e-24]} {RNA1509_34379} {RNA1310_14681.1} {RNA815_23041}
5.	MligTC455_45545	1104	23	Mlig455_002410, Mlig455_015379, Mlig455_046361	Neo: - Age: - Regeneration-downregulated BL: -2.959 Regeneration-depleted BL: -2.959		0.966	-	-	-	-	0.966	-	Mlig455_002410 {REF} {Length: 369} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_51798} {RNA1310_34306} {RNA815_43149} Mlig455_015379 {REF} {Length: 368} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_51798} {RNA1310_34306} {RNA815_43149} Mlig455_046361 {REF} {Length: 375} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_51798} {RNA1310_34306} {RNA815_43149}
6.	MligTC455_35996	500	10.41	Mlig455_034313, Mlig455_040123	Neo: - Age: Down-Up-Down, logFC(26M/2M)=0.322	AK5	0.96	-	-	-	-	0.960	-	Mlig455_034313 {REF} {Length: 3979} {TRANSSPLICED} {Human: ENSG00000154027, AK5, adenylate kinase 5, [Score=50.4, Expect=2e-06]} {Mouse: ENSMUSG00000039058, Ak5, adenylate kinase 5, [Score=49.7, Expect=2e-06]} {RNA1509_17110, RNA1509_39960, RNA1509_45641} {RNA1310_19485, RNA1509_39960, RNA1509_45641} {RNA1509_39960, RNA1509_45641, RNA815_14117} Mlig455_040123 {REF} {Length: 2223} {TRANSSPLICED} {RNA1509_17110} {RNA1310_19485} {RNA815_14117}
7.	MligTC455_08317	392	8.17	Mlig455_028420, Mlig455_028441	Neo: - Age: Up-Down-Down, logFC(26M/2M)=0.296		0.956	-	-	-	-	0.956	-	Mlig455_028420 {REF} {Length: 7899} {TRANSSPLICED} {Pfam: Nucleoside 2-deoxyribosyltransferase like [PF15891.7, score=119.7]} {Dmel: FBgn0003209, raw, [RH, Score=133, Expect=4e-32]} {Celegans: WBGene00007260, olrn-1, [RH, Score=87.8, Expect=5e-18]} {Smed: dd_Smed_v6_6200_0_1, dd_Smed_v6_6200_0_1, [RH, Score=201, Expect=4e-56]} {RNA1509_25351} {RNA1310_13410, RNA1509_25351} {RNA1509_25351, RNA815_29893} Mlig455_028441 {REF} {Length: 7529} {TRANSSPLICED} {Pfam: Nucleoside 2-deoxyribosyltransferase like [PF15891.7, score=119.7]} {Dmel: FBgn0003209, raw, [RH, Score=136, Expect=2e-33]} {Celegans: WBGene00007260, olrn-1, [RH, Score=87.8, Expect=5e-18]} {Smed: dd_Smed_v6_6200_0_1, dd_Smed_v6_6200_0_1, [RH, Score=200, Expect=8e-56]} {RNA1509_25351} {RNA1310_13410} {RNA815_29893}
8.	MligTC455_42154	1301	27.11	Mlig455_057280, Mlig455_059618	Neo: - Age: logFC(26M/2M)=-0.356 Region-enriched R2: 1.850/0.00451 Region-enriched R3: 1.206/0.02005	EFCAB5	0.955	-	-	-	-	0.955	-	Mlig455_057280 {REF} {Length: 5873} {Pfam: GAF domain [PF01590.28, score=28.1]; EF hand [PF00036.34, score=21.8]; EF-hand domain [PF13405.8, score=20.6]} {Human: ENSG00000176927, EFCAB5, EF-hand calcium binding domain 5, [RH, Score=399, Expect=2e-115]} {Mouse: ENSMUSG00000050944, Efcab5, EF-hand calcium binding domain 5, [RH, Score=367, Expect=8e-105]} {Smed: dd_Smed_v6_8209_0_1, dd_Smed_v6_8209_0_1, [RH, Score=529, Expect=2e-164]} {RNA1509_1330} {RNA1310_1624} {RNA815_449} Mlig455_059618 {REF} {Length: 5232} {TRANSSPLICED} {Pfam: GAF domain [PF01590.28, score=28.2]; EF hand [PF00036.34, score=21.8]; EF-hand domain [PF13405.8, score=20.7]} {Human: ENSG00000176927, EFCAB5, EF-hand calcium binding domain 5, [RH, Score=400, Expect=6e-116]} {Mouse: ENSMUSG00000050944, Efcab5, EF-hand calcium binding domain 5, [RH, Score=368, Expect=2e-105]} {Smed: dd_Smed_v6_8209_0_1, dd_Smed_v6_8209_0_1, [RH, Score=528, Expect=4e-164]} {RNA1509_1330, RNA1509_26864} {RNA1310_1439, RNA1509_26864} {RNA1509_26864, RNA815_449}
9.	MligTC455_25418	240	4.99	Mlig455_021896	Neo: - Age: -	CRNKL1	0.951	-	-	-	-	-	0.951	Mlig455_021896 {REF} {Length: 2980} {TRANSSPLICED} {Pfam: HAT (Half-A-TPR) repeat [PF02184.18, score=129.1]; Tetratricopeptide repeat [PF13428.8, score=75.2]; Suppressor of forked protein (Suf) [PF05843.16, score=51.9]; Tetratricopeptide repeat [PF14559.8, score=49.8]; Tetratricopeptide repeat [PF13432.8, score=36.4]; Mad3/BUB1 homology region 1 [PF08311.14, score=34.3]; Tetratricopeptide repeat [PF07719.19, score=31.8]; Tetratricopeptide repeat [PF13371.8, score=27.9]; Tetratricopeptide repeat [PF13431.8, score=26.4]; NRDE-2, necessary for RNA interference [PF08424.12, score=23.8]} {Human: ENSG00000101343, CRNKL1, crooked neck pre-mRNA splicing factor 1, [RH, Score=875, Expect=0.0]} {Mouse: ENSMUSG00000001767, Crnkl1, crooked neck pre-mRNA splicing factor 1, [RH, Score=876, Expect=0.0]} {Dmel: FBgn0000377, crn, crooked neck, [RH, Score=813, Expect=0.0]} {Celegans: WBGene00019762, M03F8.3, [RH, Score=768, Expect=0.0]} {Smed: dd_Smed_v6_4749_0_1, dd_Smed_v6_4749_0_1, [RH, Score=633, Expect=0.0]} {RNA1509_8200} {RNA1310_9194, RNA1509_8200} {RNA1509_8200, RNA815_2997}

Berezikov Lab - 2020-2021 © ERIBA