M. lignano Tomo-Seq
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Results for MligTC455_04456

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_04456 8 0.17 Mlig455_022044

Neo: -

Age: -

 Mlig455_022044 {REF} {Length: 551}

Cumulative graph for MligTC455_04456

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.939 0.608 0.99974 1.00000
RegionR2 2.207 0.608 0.99980 1.00000
RegionR3 3.293 0.608 0.99985 1.00000
RegionR4 -2.663 0.608 1.00000 1.00000
RegionR5 -1.314 0.608 0.99979 1.00000
RegionR6 -0.414 0.608 0.99983 1.00000
RegionR7 0.705 0.608 0.99981 1.00000
RegionR8 1.126 0.608 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.001 0.608 0.99990 1.00000
RegenerationR2 -0.69 0.608 0.99998 1.00000
RegenerationR3 0.181 0.608 0.99967 1.00000
RegenerationR4 2.429 0.608 0.99960 1.00000
RegenerationR5 0.311 0.608 0.99997 1.00000
RegenerationR6 0.213 0.608 1.00000 1.00000
RegenerationBL -0.993 0.608 1.00000 1.00000
RegenerationTP -0.537 0.608 1.00000 1.00000


Genes with expression patterns similar to MligTC455_04456

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_04456 8 0.17 Mlig455_022044

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_022044 {REF} {Length: 551}
2. MligTC455_09476 19 0.39 Mlig455_009290

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_009290 {REF} {Length: 2926} {RNA1509_32111} {RNA1310_47329.2} {RNA815_25064}
3. MligTC455_11360 156 3.24 Mlig455_000789

Neo: -

Age: Down-Up-Down

 LRP8 0.986 - - - - 0.986 - Mlig455_000789 {REF} {Length: 4780} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=45.1]} {Human: ENSG00000157193, LRP8, LDL receptor related protein 8, [Score=75.1, Expect=2e-13]; ENSG00000168702, LRP1B, LDL receptor related protein 1B, [Score=73.9, Expect=1e-12]; ENSG00000130164, LDLR, low density lipoprotein receptor, [Score=73.9, Expect=5e-13]; ENSG00000137642, SORL1, sortilin related receptor 1, [Score=72.0, Expect=2e-12]} {Mouse: ENSMUSG00000028613, Lrp8, low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, [Score=74.7, Expect=2e-13]; ENSMUSG00000049313, Sorl1, sortilin-related receptor, LDLR class A repeats-containing, [Score=71.6, Expect=3e-12]} {Dmel: FBgn0004649, yl, yolkless, [Score=68.6, Expect=2e-11]} {Celegans: WBGene00015083, egg-1, EGG sterile (Unfertilizable), [Score=73.9, Expect=2e-13]} {Smed: dd_Smed_v6_9829_0_1, dd_Smed_v6_9829_0_1, [Score=67.4, Expect=2e-11]} {RNA1509_15509, RNA1509_19720} {RNA1310_7577, RNA1509_19720} {RNA1509_19720, RNA815_6380}
4. MligTC455_38189 14 0.29 Mlig455_029014

Neo: -

Age: -

 SOX2 0.986 - - - - 0.986 - Mlig455_029014 {REF} {Length: 1736} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=84.5]; HMG-box domain [PF09011.12, score=39.1]; Anti-sigma-K factor rskA [PF10099.11, score=19.1]} {Human: ENSG00000181449, SOX2, SRY-box 2, [Score=127, Expect=1e-33]; ENSG00000125285, SOX21, SRY-box 21, [Score=126, Expect=4e-34]; ENSG00000182968, SOX1, SRY-box 1, [Score=125, Expect=2e-32]; ENSG00000168875, SOX14, SRY-box 14, [Score=124, Expect=2e-33]; ENSG00000134595, SOX3, SRY-box 3, [Score=123, Expect=2e-31]; ENSG00000129194, SOX15, SRY-box 15, [Score=121, Expect=4e-33]} {Mouse: ENSMUSG00000061517, Sox21, SRY (sex determining region Y)-box 21, [Score=127, Expect=3e-34]; ENSMUSG00000074637, Sox2, SRY (sex determining region Y)-box 2, [Score=127, Expect=6e-34]; ENSMUSG00000096014, Sox1, SRY (sex determining region Y)-box 1, [Score=125, Expect=1e-32]; ENSMUSG00000053747, Sox14, SRY (sex determining region Y)-box 14, [Score=124, Expect=9e-34]; ENSMUSG00000045179, Sox3, SRY (sex determining region Y)-box 3, [Score=124, Expect=7e-32]; ENSMUSG00000041287, Sox15, SRY (sex determining region Y)-box 15, [Score=122, Expect=7e-33]} {Dmel: FBgn0036411, Sox21a, [Score=127, Expect=1e-33]} {Celegans: WBGene00004949, sox-2, Transcription factor sox-2, [Score=129, Expect=2e-35]} {Smed: dd_Smed_v6_13215_0_1, dd_Smed_v6_13215_0_1, [Score=132, Expect=7e-35]} {RNA1310_94698}
5. MligTC455_08425 12 0.25 Mlig455_026708

Neo: Irradiation

Age: -

 0.976 - - - - 0.976 - Mlig455_026708 {REF} {Length: 3657} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=23.6]; Ankyrin repeat [PF00023.32, score=22.9]; Ankyrin repeat [PF13606.8, score=22.3]} {RNA1509_49335} {RNA1310_6702, RNA1509_49335} {RNA1509_49335, RNA815_17045}
6. MligTC455_45749 15 0.3 Mlig455_008512

Neo: -

Age: -

Regeneration-downregulated R2: -5.536

Regeneration-depleted R2: -5.536

 SPOP 0.97 - - - - 0.970 - Mlig455_008512 {REF} {Length: 2974} {Pfam: BTB/POZ domain [PF00651.33, score=83.4]; BTB And C-terminal Kelch [PF07707.17, score=22.6]} {Human: ENSG00000121067, SPOP, speckle type BTB/POZ protein, [Score=107, Expect=7e-25]} {Mouse: ENSMUSG00000057522, Spop, speckle-type POZ protein, [Score=107, Expect=5e-25]; ENSMUSG00000089696, Gm4778, predicted gene 4778, [Score=105, Expect=2e-24]; ENSMUSG00000095251, Gm10697, predicted gene 10697, [Score=103, Expect=4e-24]; ENSMUSG00000103362, Tdpoz2, TD and POZ domain containing 2, [Score=103, Expect=5e-24]; ENSMUSG00000094163, Tdpoz5, TD and POZ domain containing 5, [Score=103, Expect=4e-24]; ENSMUSG00000103350, Gm37596, predicted gene, 37596, [Score=103, Expect=4e-24]; ENSMUSG00000074424, Gm10696, predicted gene 10696, [Score=103, Expect=7e-24]; ENSMUSG00000058005, Tdpoz3, TD and POZ domain containing 3, [Score=102, Expect=2e-23]} {Dmel: FBgn0264493, rdx, roadkill, [Score=110, Expect=3e-26]} {Celegans: WBGene00011815, bath-43, BTB and MATH domain-containing protein 43, [Score=95.1, Expect=5e-21]} {Smed: dd_Smed_v6_7639_0_1, dd_Smed_v6_7639_0_1, [Score=85.5, Expect=3e-19]} {RNA1509_24346} {RNA1310_15211} {RNA815_23436}
7. MligTC455_08610 14 0.29 Mlig455_029836

Neo: -

Age: -

Regeneration-downregulated R2: -6.450

Regeneration-depleted R2: -6.450

 0.962 - - - - 0.962 - Mlig455_029836 {REF} {Length: 1637} {NoTransDecoderORF} {RNA1509_5312} {RNA1310_99996} {RNA815_25433}
8. MligTC455_18890 42 0.87 Mlig455_013800

Neo: -

Age: Up-Down-Down

 0.962 - - - - 0.962 - Mlig455_013800 {REF} {Length: 1234} {RNA1509_44733} {RNA1310_35976} {RNA815_45308}
9. MligTC455_01491 34 0.71 Mlig455_013471

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_013471 {REF} {Length: 83} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_18475} {RNA1310_12057} {RNA815_5439}
10. MligTC455_33982 83 1.72 Mlig455_013707, Mlig455_013726

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_013707 {REF} {Length: 1699} {RNA1310_16077} {RNA815_21186}

Mlig455_013726 {REF} {Length: 1708} {RNA1310_16077} {RNA815_21186}
11. MligTC455_19679 66 1.38 Mlig455_028164

Neo: -

Age: -

Region-enriched R2: 5.194/0.00256

 SLC7A11 0.951 - - - - 0.951 - Mlig455_028164 {REF} {Length: 3562} {TRANSSPLICED} {Pfam: Amino acid permease [PF13520.8, score=187.6]; Amino acid permease [PF00324.23, score=95.8]} {Human: ENSG00000151012, SLC7A11, solute carrier family 7 member 11, [RH, Score=350, Expect=1e-115]} {Mouse: ENSMUSG00000027737, Slc7a11, solute carrier family 7 (cationic amino acid transporter, y+ system), member 11, [Score=370, Expect=2e-123]} {Dmel: FBgn0002778, mnd, minidiscs, [RH, Score=379, Expect=5e-127]} {Celegans: WBGene00000004, aat-3, Amino Acid Transporter, [Score=331, Expect=2e-108]} {Smed: dd_Smed_v6_4211_0_1, dd_Smed_v6_4211_0_1, [Score=465, Expect=3e-160]} {RNA1310_31710.1} {RNA815_14153}

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