M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_04551

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_04551 13 0.27 Mlig455_047551

Neo: -

Age: -

 Mlig455_047551 {REF} {Length: 238} {NoTransDecoderORF} {RNA1509_12879} {RNA1310_633} {RNA815_23891.1}

Cumulative graph for MligTC455_04551

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.453 0.81 0.99977 1.00000
RegionR2 -1.43 0.81 0.99979 1.00000
RegionR3 1.489 0.81 0.20609 0.74595
RegionR4 2.765 0.81 0.27957 0.58690
RegionR5 0.89 0.81 0.49082 0.85405
RegionR6 0.845 0.81 0.49529 1.00000
RegionR7 -2.434 0.81 0.99974 1.00000
RegionR8 -2.578 0.81 0.99976 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.976 0.81 0.99996 1.00000
RegenerationR2 1.495 0.81 0.99983 1.00000
RegenerationR3 0.564 0.81 0.36875 0.78320
RegenerationR4 -0.013 0.81 0.52767 0.88338
RegenerationR5 1.249 0.81 0.16840 0.59526
RegenerationR6 -0.513 0.81 0.87260 1.00000
RegenerationBL 2.182 0.81 0.99996 1.00000
RegenerationTP 0.843 0.81 0.99994 1.00000


Genes with expression patterns similar to MligTC455_04551

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_04551 13 0.27 Mlig455_047551

Neo: -

Age: -

 1 1.000 - - - - - Mlig455_047551 {REF} {Length: 238} {NoTransDecoderORF} {RNA1509_12879} {RNA1310_633} {RNA815_23891.1}
2. MligTC455_04552 15 0.31 Mlig455_069681

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.677

 1 1.000 - - - - - Mlig455_069681 {REF} {Length: 311} {NoTransDecoderORF} {RNA1509_12879} {RNA1310_633} {RNA815_23891.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA