M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_04888

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_04888 8 0.17 Mlig455_015181

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.376

 ENPP6 Mlig455_015181 {REF} {Length: 2141} {TRANSSPLICED} {Pfam: Type I phosphodiesterase / nucleotide pyrophosphatase [PF01663.24, score=125.7]} {Human: ENSG00000164303, ENPP6, ectonucleotide pyrophosphatase/phosphodiesterase 6, [Score=167, Expect=9e-46]} {Mouse: ENSMUSG00000038173, Enpp6, ectonucleotide pyrophosphatase/phosphodiesterase 6, [Score=167, Expect=4e-46]} {Celegans: WBGene00007753, C27A7.1, Ectonucleotide pyrophosphatase/phosphodiesterase C27A7.1, [Score=80.1, Expect=1e-15]} {Smed: dd_Smed_v6_1269_0_1, dd_Smed_v6_1269_0_1, [RH, Score=218, Expect=4e-65]} {RNA1509_53042} {RNA1310_15252, RNA1509_53042} {RNA1509_53042, RNA815_10561}

Cumulative graph for MligTC455_04888

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_04888

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_04888 8 0.17 Mlig455_015181

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.376

 ENPP6 1 - - - - 1.000 - Mlig455_015181 {REF} {Length: 2141} {TRANSSPLICED} {Pfam: Type I phosphodiesterase / nucleotide pyrophosphatase [PF01663.24, score=125.7]} {Human: ENSG00000164303, ENPP6, ectonucleotide pyrophosphatase/phosphodiesterase 6, [Score=167, Expect=9e-46]} {Mouse: ENSMUSG00000038173, Enpp6, ectonucleotide pyrophosphatase/phosphodiesterase 6, [Score=167, Expect=4e-46]} {Celegans: WBGene00007753, C27A7.1, Ectonucleotide pyrophosphatase/phosphodiesterase C27A7.1, [Score=80.1, Expect=1e-15]} {Smed: dd_Smed_v6_1269_0_1, dd_Smed_v6_1269_0_1, [RH, Score=218, Expect=4e-65]} {RNA1509_53042} {RNA1310_15252, RNA1509_53042} {RNA1509_53042, RNA815_10561}
2. MligTC455_08435 9 0.18 Mlig455_018007

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_018007 {REF} {Length: 1911} {NoTransDecoderORF} {RNA1509_56890} {RNA1310_105231} {RNA815_60501}
3. MligTC455_28537 11 0.23 Mlig455_046145

Neo: -

Age: Up-Down-Down

 ANK2 0.997 - - - - 0.997 - Mlig455_046145 {REF} {Length: 6079} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=428.5]; Ankyrin repeat [PF00023.32, score=384.3]; Ankyrin repeats (many copies) [PF13637.8, score=369.2]; Ankyrin repeats (many copies) [PF13857.8, score=358.1]; Ankyrin repeat [PF13606.8, score=314.6]; UPA domain [PF17809.3, score=157.1]; ZU5 domain [PF00791.22, score=109.6]; Death domain [PF00531.24, score=50.0]} {Human: ENSG00000145362, ANK2, ankyrin 2, [RH, Score=1475, Expect=0.0]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [RH, Score=1495, Expect=0.0]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [RH, Score=1456, Expect=0.0]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [RH, Score=1552, Expect=0.0]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [RH, Score=971, Expect=0.0]} {Smed: dd_Smed_v6_3523_0_1, dd_Smed_v6_3523_0_1, [RH, Score=1754, Expect=0.0]} {RNA1509_2291} {RNA1310_4889.2, RNA1509_2291} {RNA1509_2291, RNA815_191.2}
4. MligTC455_14943 25 0.52 Mlig455_014051

Neo: -

Age: Down-Up-Down

 0.982 - - - - 0.982 - Mlig455_014051 {REF} {Length: 3664} {Pfam: CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 [PF07878.13, score=19.3]} {RNA1509_603} {RNA1310_12687} {RNA815_7928}
5. MligTC455_13015 100 2.08 Mlig455_052363

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_052363 {REF} {Length: 1915} {RNA1509_42540} {RNA1310_52436} {RNA815_30873}
6. MligTC455_07769 13 0.27 Mlig455_003660, Mlig455_003871

Neo: Int S/G2/M

Age: -

 SETMAR 0.971 - - - - 0.971 -

Mlig455_003660 {REF} {Length: 1236} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=35.3]; Transposase (partial DDE domain) [PF01359.20, score=24.6]; Homeodomain-like domain [PF13565.8, score=22.6]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=119, Expect=6e-31]} {Smed: dd_Smed_v6_9592_1_13, dd_Smed_v6_9592_1_13, [RH, Score=46.6, Expect=5e-07]} {RNA1509_51224} {RNA1310_3855.1} {RNA815_19895}

Mlig455_003871 {REF} {Length: 1355} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=35.3]; Transposase (partial DDE domain) [PF01359.20, score=24.6]; Homeodomain-like domain [PF13565.8, score=22.6]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=119, Expect=6e-31]} {Smed: dd_Smed_v6_9592_1_13, dd_Smed_v6_9592_1_13, [RH, Score=46.6, Expect=5e-07]} {RNA1509_51224} {RNA1310_3855.1} {RNA815_19895}
7. MligTC455_42125 4 0.09 Mlig455_001847

Neo: -

Age: -

 SETMAR 0.967 - - - - 0.967 - Mlig455_001847 {REF} {Length: 2082} {Pfam: DDE superfamily endonuclease [PF13358.8, score=26.6]; Integrase core domain [PF00665.28, score=19.7]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=72.4, Expect=6e-15]} {Smed: dd_Smed_v6_13618_0_23, dd_Smed_v6_13618_0_23, [Score=68.9, Expect=7e-16]} {RNA1310_52631} {RNA815_47997}
8. MligTC455_30330 26 0.53 Mlig455_061523

Neo: -

Age: -

 TRAF6 0.964 - - - - 0.964 - Mlig455_061523 {REF} {Length: 3170} {Pfam: WD domain, G-beta repeat [PF00400.34, score=23.3]; TRAF-type zinc finger [PF02176.20, score=20.6]} {Human: ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=62.4, Expect=2e-09]} {Mouse: ENSMUSG00000026942, Traf2, TNF receptor-associated factor 2, [Score=65.1, Expect=1e-10]} {Smed: dd_Smed_v6_4392_0_1, dd_Smed_v6_4392_0_1, [Score=77.0, Expect=9e-15]} {RNA1509_36404} {RNA1310_29668} {RNA815_11260}
9. MligTC455_10521 17 0.36 Mlig455_014391

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_014391 {REF} {Length: 1313} {RNA1509_36146} {RNA1310_32605} {RNA815_14202}
10. MligTC455_09821 68 1.42 Mlig455_008590, Mlig455_008602

Neo: Germline

Age: -

Region-enriched R4: 4.607/0.00565

 0.954 - - - - 0.954 -

Mlig455_008590 {REF} {Length: 1172} {RNA1509_31992} {RNA1310_50726} {RNA815_2876.1}

Mlig455_008602 {REF} {Length: 739} {RNA1509_31992} {RNA1310_31323} {RNA815_34267}
11. MligTC455_07243 5 0.1 Mlig455_059940

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_059940 {REF} {Length: 716} {Pfam: Poly(hydroxyalcanoate) granule associated protein (phasin) [PF05597.13, score=19.7]; Dynamin GTPase effector domain [PF02212.20, score=19.3]} {RNA1310_9825} {RNA815_13518}
12. MligTC455_43927 11 0.23 Mlig455_036246

Neo: -

Age: -

 CDA 0.951 - - - - 0.951 - Mlig455_036246 {REF} {Length: 2253} {Pfam: Cytidine and deoxycytidylate deaminase zinc-binding region [PF00383.25, score=51.5]; Cytidine and deoxycytidylate deaminase zinc-binding region [PF08211.14, score=37.7]} {Human: ENSG00000158825, CDA, cytidine deaminase, [RH, Score=96.7, Expect=6e-26]} {Mouse: ENSMUSG00000028755, Cda, cytidine deaminase, [RH, Score=105, Expect=2e-29]} {Dmel: FBgn0032003, CG8349, [RH, Score=89.7, Expect=2e-22]} {Celegans: WBGene00000391, cdd-1, Cytidine deaminase, [RH, Score=95.1, Expect=1e-25]} {Smed: dd_Smed_v6_3308_0_1, dd_Smed_v6_3308_0_1, [RH, Score=82.8, Expect=3e-21]} {RNA1509_38090} {RNA1310_36778} {RNA815_27264}
13. MligTC455_20014 9 0.19 Mlig455_008460

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_008460 {REF} {Length: 2539} {NoTransDecoderORF} {RNA1509_22636} {RNA1310_24709.1} {RNA815_28953}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA