TomoSeq data search

Data search

Results for MligTC455_05780

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_05780

56

1.16

Mlig455_029153

Neo: -

Age: -

ARHGEF17

Mlig455_029153 {REF} {Length: 6124} {TRANSSPLICED} {Pfam: WD40 repeated domain [PF19056.2, score=138.9]; RhoGEF domain [PF00621.22, score=136.8]} {Human: ENSG00000110237, ARHGEF17, Rho guanine nucleotide exchange factor 17, [Score=229, Expect=7e-61]} {Mouse: ENSMUSG00000032875, Arhgef17, Rho guanine nucleotide exchange factor (GEF) 17, [Score=199, Expect=8e-51]} {Dmel: FBgn0262562, CG43102, [Score=327, Expect=4e-91]} {Celegans: WBGene00019832, osg-1, Rho guanine nucleotide exchange factor osg-1, [Score=190, Expect=1e-48]} {Smed: dd_Smed_v6_2922_0_1, dd_Smed_v6_2922_0_1, [Score=358, Expect=2e-102]} {RNA1310_16394} {RNA815_30274}

Cumulative graph for MligTC455_05780

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	1.226	1.487	0.51035	1.00000
RegionR2	2.747	1.487	0.02369	0.17120
RegionR3	1.613	1.487	0.11421	0.58768
RegionR4	0.528	1.487	0.48882	0.81595
RegionR5	-0.038	1.487	0.70686	1.00000
RegionR6	0.846	1.487	0.40207	0.97312
RegionR7	-3.393	1.487	0.99966	1.00000
RegionR8	-3.529	1.487	0.99949	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.186	1.487	0.50428	1.00000
RegenerationR2	0.395	1.487	0.57149	0.90279
RegenerationR3	1.316	1.487	0.11641	0.53220
RegenerationR4	0.38	1.487	0.67066	0.94265
RegenerationR5	2.189	1.487	0.00646	0.14638
RegenerationR6	0.195	1.487	0.88439	1.00000
RegenerationBL	-0.649	1.487	0.99971	1.00000
RegenerationTP	4.767	1.487	0.06053	0.39872

Genes with expression patterns similar to MligTC455_05780

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_05780	56	1.16	Mlig455_029153	Neo: - Age: -	ARHGEF17	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_029153 {REF} {Length: 6124} {TRANSSPLICED} {Pfam: WD40 repeated domain [PF19056.2, score=138.9]; RhoGEF domain [PF00621.22, score=136.8]} {Human: ENSG00000110237, ARHGEF17, Rho guanine nucleotide exchange factor 17, [Score=229, Expect=7e-61]} {Mouse: ENSMUSG00000032875, Arhgef17, Rho guanine nucleotide exchange factor (GEF) 17, [Score=199, Expect=8e-51]} {Dmel: FBgn0262562, CG43102, [Score=327, Expect=4e-91]} {Celegans: WBGene00019832, osg-1, Rho guanine nucleotide exchange factor osg-1, [Score=190, Expect=1e-48]} {Smed: dd_Smed_v6_2922_0_1, dd_Smed_v6_2922_0_1, [Score=358, Expect=2e-102]} {RNA1310_16394} {RNA815_30274}
2.	MligTC455_25857	24	0.51	Mlig455_001063	Neo: - Age: -		0.992	-	-	0.992	-	-	-	Mlig455_001063 {REF} {Length: 3205} {RNA1509_35414} {RNA1310_13077} {RNA815_6409}
3.	MligTC455_12418	11	0.23	Mlig455_043787	Neo: - Age: -		0.982	-	-	0.982	-	-	-	Mlig455_043787 {REF} {Length: 1123} {RNA1310_14500.2}
4.	MligTC455_04076	40	0.83	Mlig455_039207	Neo: - Age: -	SHOC2	0.968	-	-	-	-	-	0.968	Mlig455_039207 {REF} {Length: 3742} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=240.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=136.1]; Leucine Rich Repeat [PF00560.35, score=38.2]; Leucine-rich repeat [PF14580.8, score=36.7]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=19.5]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=407, Expect=3e-134]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=410, Expect=1e-135]} {Dmel: FBgn0038504, Sur-8, [Score=422, Expect=1e-139]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=393, Expect=1e-129]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=385, Expect=4e-126]} {RNA1509_19249} {RNA1310_7161.1} {RNA815_7354}
5.	MligTC455_17095	47	0.99	Mlig455_035386	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.679		0.965	-	-	0.965	-	-	-	Mlig455_035386 {REF} {Length: 2131} {NoTransDecoderORF} {RNA1509_25834} {RNA1310_12389} {RNA815_4410.1}
6.	MligTC455_35561	23	0.47	Mlig455_058398	Neo: - Age: -		0.965	-	-	0.965	-	-	-	Mlig455_058398 {REF} {Length: 576} {NoTransDecoderORF}
7.	MligTC455_29445	68	1.42	Mlig455_036100	Neo: - Age: -		0.964	-	-	0.964	-	-	-	Mlig455_036100 {REF} {Length: 1620} {NoTransDecoderORF} {RNA1310_12760} {RNA815_21918}
8.	MligTC455_27016	266	5.53	Mlig455_001514	Neo: - Age: logFC(26M/2M)=0.472	ETV7	0.96	-	-	-	0.960	-	-	Mlig455_001514 {REF} {Length: 2693} {Pfam: Ets-domain [PF00178.24, score=65.8]} {Human: ENSG00000010030, ETV7, ETS variant 7, [Score=69.7, Expect=7e-13]; ENSG00000124664, SPDEF, SAM pointed domain containing ETS transcription factor, [Score=68.6, Expect=2e-12]} {Mouse: ENSMUSG00000024215, Spdef, SAM pointed domain containing ets transcription factor, [Score=67.8, Expect=3e-12]} {Dmel: FBgn0005659, Ets98B, Ets at 98B, [Score=64.3, Expect=5e-11]} {Celegans: WBGene00016029, elf-1, See eff, [Score=69.3, Expect=8e-13]} {Smed: dd_Smed_v6_6015_0_1, dd_Smed_v6_6015_0_1, [Score=73.6, Expect=2e-14]} {RNA1509_54322} {RNA1310_11502} {RNA815_8770.1}
9.	MligTC455_30712	53	1.1	Mlig455_055428	Neo: - Age: Up-Down-Up		0.95	-	-	0.950	-	-	-	Mlig455_055428 {REF} {Length: 3663} {TRANSSPLICED} {RNA1509_31175} {RNA1310_7952} {RNA815_1590.1}
10.	MligTC455_42173	58	1.2	Mlig455_050213	Neo: - Age: Down-Up-Down		0.95	-	-	-	-	0.950	-	Mlig455_050213 {REF} {Length: 1348} {Pfam: Innexin [PF00876.20, score=176.0]} {Dmel: FBgn0004646, ogre, optic ganglion reduced, [Score=48.1, Expect=7e-06]} {Celegans: WBGene00006749, unc-9, Innexin unc-9, [Score=129, Expect=3e-34]} {Smed: dd_Smed_v6_10766_0_1, dd_Smed_v6_10766_0_1, [Score=181, Expect=2e-52]} {RNA1509_10527} {RNA1310_14408} {RNA815_844.2}

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