M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_08623

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_08623 23 0.48 Mlig455_040665

Neo: -

Age: -

 SETMAR Mlig455_040665 {REF} {Length: 845} {Pfam: DDE superfamily endonuclease [PF13358.8, score=21.3]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=72.4, Expect=1e-14]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=60.8, Expect=1e-12]} {RNA1509_17190} {RNA1310_10595.2} {RNA815_362.1}

Cumulative graph for MligTC455_08623

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.6 0.97 0.99997 1.00000
RegionR2 2.494 0.97 0.99991 1.00000
RegionR3 0.64 0.97 0.99998 1.00000
RegionR4 -2.383 0.97 0.99977 1.00000
RegionR5 -0.355 0.97 0.99994 1.00000
RegionR6 0.293 0.97 0.99998 1.00000
RegionR7 0.951 0.97 0.99996 1.00000
RegionR8 0.96 0.97 0.99997 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.887 0.97 0.99996 1.00000
RegenerationR2 3.605 0.97 0.03071 0.28870
RegenerationR3 1.722 0.97 0.36092 0.77741
RegenerationR4 3.922 0.97 0.04752 0.35143
RegenerationR5 3.532 0.97 0.04668 0.35016
RegenerationR6 5.014 0.97 0.02231 0.18527
RegenerationBL -0.847 0.97 0.99996 1.00000
RegenerationTP 2.61 0.97 0.36781 0.80578


Genes with expression patterns similar to MligTC455_08623

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_08623 23 0.48 Mlig455_040665

Neo: -

Age: -

 SETMAR 2 - - - 1.000 1.000 - Mlig455_040665 {REF} {Length: 845} {Pfam: DDE superfamily endonuclease [PF13358.8, score=21.3]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=72.4, Expect=1e-14]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=60.8, Expect=1e-12]} {RNA1509_17190} {RNA1310_10595.2} {RNA815_362.1}
2. MligTC455_06778 5 0.1 Mlig455_026111

Neo: -

Age: -

 1.772 - - - 0.954 0.818 - Mlig455_026111 {REF} {Length: 693} {NoTransDecoderORF} {RNA1310_56921} {RNA815_29202}
3. MligTC455_24534 14 0.29 Mlig455_011965

Neo: -

Age: -

 1.664 - - - 0.956 0.708 - Mlig455_011965 {REF} {Length: 1288} {NoTransDecoderORF} {RNA1509_28752} {RNA1310_137924} {RNA815_7756.1}
4. MligTC455_06677 36 0.75 Mlig455_046172

Neo: -

Age: Down-Up-Down

 1 - - - 1.000 - - Mlig455_046172 {REF} {Length: 571} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_30549} {RNA1310_22209.1} {RNA815_17275}
5. MligTC455_01033 3 0.06 Mlig455_010574

Neo: -

Age: -

 0.988 - - - 0.988 - - Mlig455_010574 {REF} {Length: 347} {NoTransDecoderORF} {RNA1310_119310}
6. MligTC455_21582 28 0.58 Mlig455_048795

Neo: -

Age: -

 0.988 - - - 0.988 - - Mlig455_048795 {REF} {Length: 582} {NoTransDecoderORF}
7. MligTC455_20149 191 3.98 Mlig455_000246, Mlig455_058518

Neo: -

Age: -

Region-enriched R2: 4.445/0.03524

 HPCAL4, NCALD 0.97 - - - - 0.970 -

Mlig455_000246 {REF} {Length: 978} {Human: ENSG00000116983, HPCAL4, hippocalcin like 4, [Score=79.0, Expect=2e-17]; ENSG00000104490, NCALD, neurocalcin delta, [Score=79.0, Expect=2e-17]; ENSG00000115756, HPCAL1, hippocalcin like 1, [Score=77.8, Expect=5e-17]; ENSG00000185774, KCNIP4, potassium voltage-gated channel interacting protein 4, [Score=75.5, Expect=1e-15]} {Mouse: ENSMUSG00000051359, Ncald, neurocalcin delta, [Score=79.0, Expect=1e-17]; ENSMUSG00000046093, Hpcal4, hippocalcin-like 4, [Score=79.0, Expect=1e-17]; ENSMUSG00000071379, Hpcal1, hippocalcin-like 1, [Score=77.0, Expect=7e-17]; ENSMUSG00000029088, Kcnip4, Kv channel interacting protein 4, [Score=75.5, Expect=8e-16]} {Dmel: FBgn0013303, Nca, Neurocalcin, [Score=83.2, Expect=3e-19]} {Celegans: WBGene00003563, ncs-1, Neuronal calcium sensor 1, [Score=67.8, Expect=1e-13]} {Smed: dd_Smed_v6_2568_0_1, dd_Smed_v6_2568_0_1, [Score=72.0, Expect=2e-15]} {RNA1310_101382}

Mlig455_058518 {REF} {Length: 1176} {Human: ENSG00000104490, NCALD, neurocalcin delta, [Score=82.0, Expect=2e-18]; ENSG00000115756, HPCAL1, hippocalcin like 1, [Score=81.3, Expect=3e-18]; ENSG00000116983, HPCAL4, hippocalcin like 4, [Score=80.1, Expect=7e-18]} {Mouse: ENSMUSG00000051359, Ncald, neurocalcin delta, [Score=82.0, Expect=8e-19]; ENSMUSG00000071379, Hpcal1, hippocalcin-like 1, [Score=80.5, Expect=4e-18]; ENSMUSG00000046093, Hpcal4, hippocalcin-like 4, [Score=80.1, Expect=5e-18]} {Dmel: FBgn0013303, Nca, Neurocalcin, [Score=84.0, Expect=1e-19]} {Celegans: WBGene00003563, ncs-1, Neuronal calcium sensor 1, [Score=67.0, Expect=2e-13]} {Smed: dd_Smed_v6_2568_0_1, dd_Smed_v6_2568_0_1, [Score=73.2, Expect=8e-16]} {RNA1310_101382}
8. MligTC455_33734 18 0.38 Mlig455_050606

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_050606 {REF} {Length: 1003} {NoTransDecoderORF} {RNA1509_50656} {RNA1310_18704} {RNA815_11979}
9. MligTC455_26323 2191 45.64 Mlig455_027309

Neo: -

Age: -

Region-enriched R6: 3.346/0.00002
Region-enriched R2: 3.112/0.00143

 0.957 - - - - 0.957 - Mlig455_027309 {REF} {Length: 759} {Smed: dd_Smed_v6_1588_0_1, dd_Smed_v6_1588_0_1, [Score=42.0, Expect=2e-06]} {RNA1509_6938} {RNA1310_54464.1, RNA1509_6938} {RNA1509_6938, RNA815_23024.1}
10. MligTC455_20607 45 0.94 Mlig455_011584

Neo: -

Age: -

Regeneration-upregulated R2: 5.334

Regeneration-enriched R2: 5.334

 LITAF 0.95 - - - - 0.950 - Mlig455_011584 {REF} {Length: 1777} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=79.3]} {Human: ENSG00000189067, LITAF, lipopolysaccharide induced TNF factor, [Score=86.7, Expect=8e-22]} {Mouse: ENSMUSG00000022500, Litaf, LPS-induced TN factor, [Score=86.3, Expect=8e-22]} {Dmel: FBgn0052280, CG32280, [Score=55.1, Expect=4e-10]} {Celegans: WBGene00009484, F36G3.3, [Score=69.3, Expect=2e-15]} {Smed: dd_Smed_v6_353_0_1, dd_Smed_v6_353_0_1, [Score=76.6, Expect=9e-19]} {RNA1509_31745} {RNA1310_18428.1} {RNA815_8007}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA