M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_08877

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_08877 1080 22.49 Mlig455_064594

Neo: -

Age: Down-Down-Up

 MPP5 Mlig455_064594 {REF} {Length: 2355} {Pfam: Guanylate kinase [PF00625.23, score=73.1]; SH3 domain [PF00018.30, score=36.9]; Variant SH3 domain [PF07653.19, score=30.3]; PDZ domain [PF00595.26, score=26.9]; Variant SH3 domain [PF14604.8, score=21.0]; PDZ domain [PF17820.3, score=20.7]} {Human: ENSG00000072415, MPP5, membrane palmitoylated protein 5, [Score=180, Expect=9e-50]} {Mouse: ENSMUSG00000021112, Mpp5, membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5), [Score=179, Expect=2e-49]} {Dmel: FBgn0050021, metro, menage a trois, [Score=154, Expect=2e-41]} {Celegans: WBGene00002991, lin-2, [Score=160, Expect=3e-43]} {Smed: dd_Smed_v6_7957_0_1, dd_Smed_v6_7957_0_1, [Score=140, Expect=1e-36]} {RNA1509_14422, RNA1509_32149} {RNA1310_16841, RNA1509_14422, RNA1509_32149} {RNA1509_14422, RNA1509_32149, RNA815_8152}

Cumulative graph for MligTC455_08877

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.028 4.577 0.12478 0.71924
RegionR2 0.479 4.577 0.38874 0.78348
RegionR3 0.774 4.577 0.09888 0.55143
RegionR4 0.95 4.577 0.09646 0.29994
RegionR5 0.474 4.577 0.32012 0.66180
RegionR6 0.528 4.577 0.27889 0.86893
RegionR7 0.676 4.577 0.22272 0.84445
RegionR8 -1.852 4.577 0.05167 0.44314

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.986 4.577 0.19211 0.93064
RegenerationR2 0.444 4.577 0.36573 0.79254
RegenerationR3 0.341 4.577 0.51060 0.86159
RegenerationR4 0.887 4.577 0.10146 0.49301
RegenerationR5 0.695 4.577 0.17261 0.60152
RegenerationR6 0.759 4.577 0.15803 0.48586
RegenerationBL 0.94 4.577 0.10560 0.38355
RegenerationTP 0.721 4.577 0.31287 0.75727


Genes with expression patterns similar to MligTC455_08877

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_08877 1080 22.49 Mlig455_064594

Neo: -

Age: Down-Down-Up

 MPP5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_064594 {REF} {Length: 2355} {Pfam: Guanylate kinase [PF00625.23, score=73.1]; SH3 domain [PF00018.30, score=36.9]; Variant SH3 domain [PF07653.19, score=30.3]; PDZ domain [PF00595.26, score=26.9]; Variant SH3 domain [PF14604.8, score=21.0]; PDZ domain [PF17820.3, score=20.7]} {Human: ENSG00000072415, MPP5, membrane palmitoylated protein 5, [Score=180, Expect=9e-50]} {Mouse: ENSMUSG00000021112, Mpp5, membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5), [Score=179, Expect=2e-49]} {Dmel: FBgn0050021, metro, menage a trois, [Score=154, Expect=2e-41]} {Celegans: WBGene00002991, lin-2, [Score=160, Expect=3e-43]} {Smed: dd_Smed_v6_7957_0_1, dd_Smed_v6_7957_0_1, [Score=140, Expect=1e-36]} {RNA1509_14422, RNA1509_32149} {RNA1310_16841, RNA1509_14422, RNA1509_32149} {RNA1509_14422, RNA1509_32149, RNA815_8152}
2. MligTC455_08878 1102 22.96 Mlig455_066779

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=2.617

 MPP3 5.798 0.974 0.928 0.970 0.996 0.958 0.972 Mlig455_066779 {REF} {Length: 1701} {Pfam: Guanylate kinase [PF00625.23, score=75.6]} {Human: ENSG00000161647, MPP3, membrane palmitoylated protein 3, [Score=99.4, Expect=2e-23]; ENSG00000108852, MPP2, membrane palmitoylated protein 2, [Score=95.9, Expect=1e-22]} {Mouse: ENSMUSG00000052373, Mpp3, membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3), [Score=98.2, Expect=3e-23]; ENSMUSG00000017314, Mpp2, membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2), [Score=97.1, Expect=6e-23]; ENSMUSG00000057440, Mpp7, membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7), [Score=96.3, Expect=1e-22]} {Dmel: FBgn0261873, sdt, stardust, [Score=103, Expect=4e-25]} {Celegans: WBGene00002991, lin-2, [Score=98.2, Expect=1e-23]} {Smed: dd_Smed_v6_4689_0_1, dd_Smed_v6_4689_0_1, [Score=101, Expect=1e-24]} {RNA1509_14422} {RNA1310_16841} {RNA815_8152}
3. MligTC455_27690 20888 435.17 Mlig455_048257

Neo: -

Age: Up-Down-Up

 TUBA1A 1.827 - - 0.865 - 0.962 - Mlig455_048257 {REF} {Length: 2408} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.27, score=229.4]; Tubulin C-terminal domain [PF03953.19, score=175.8]; Tubulin domain [PF14881.8, score=19.0]} {Human: ENSG00000167552, TUBA1A, tubulin alpha 1a, [RH, Score=933, Expect=0.0]; ENSG00000123416, TUBA1B, tubulin alpha 1b, [RH, Score=931, Expect=0.0]; ENSG00000198033, TUBA3C, tubulin alpha 3c, [RH, Score=924, Expect=0.0]; ENSG00000075886, TUBA3D, tubulin alpha 3d, [RH, Score=924, Expect=0.0]; ENSG00000152086, TUBA3E, tubulin alpha 3e, [RH, Score=907, Expect=0.0]; ENSG00000167553, TUBA1C, tubulin alpha 1c, [RH, Score=887, Expect=0.0]} {Mouse: ENSMUSG00000072235, Tuba1a, tubulin, alpha 1A, [RH, Score=933, Expect=0.0]; ENSMUSG00000023004, Tuba1b, tubulin, alpha 1B, [RH, Score=931, Expect=0.0]; ENSMUSG00000067702, Tuba3a, tubulin, alpha 3A, [RH, Score=924, Expect=0.0]; ENSMUSG00000067338, Tuba3b, tubulin, alpha 3B, [RH, Score=924, Expect=0.0]} {Dmel: FBgn0003884, alphaTub84B, alpha-Tubulin at 84B, [RH, Score=919, Expect=0.0]} {Celegans: WBGene00003175, mec-12, Tubulin alpha-3 chain Detyrosinated tubulin alpha-3 chain, [RH, Score=853, Expect=0.0]} {Smed: dd_Smed_v6_10947_0_2, dd_Smed_v6_10947_0_2, [RH, Score=931, Expect=0.0]} {RNA1509_34417, RNA1509_43271} {RNA1310_10339.1, RNA1509_34417, RNA1509_43271} {RNA1509_34417, RNA1509_43271, RNA815_3971.1}
4. MligTC455_27691 41817 871.19 Mlig455_048291, Mlig455_048316

Neo: -

Age: -

 TUBA1A 1.823 - - 0.861 - 0.962 -

Mlig455_048291 {REF} {Length: 2408} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.27, score=229.4]; Tubulin C-terminal domain [PF03953.19, score=175.8]; Tubulin domain [PF14881.8, score=19.0]} {Human: ENSG00000167552, TUBA1A, tubulin alpha 1a, [RH, Score=933, Expect=0.0]; ENSG00000123416, TUBA1B, tubulin alpha 1b, [RH, Score=931, Expect=0.0]; ENSG00000198033, TUBA3C, tubulin alpha 3c, [RH, Score=924, Expect=0.0]; ENSG00000075886, TUBA3D, tubulin alpha 3d, [RH, Score=924, Expect=0.0]; ENSG00000152086, TUBA3E, tubulin alpha 3e, [RH, Score=907, Expect=0.0]; ENSG00000167553, TUBA1C, tubulin alpha 1c, [RH, Score=887, Expect=0.0]} {Mouse: ENSMUSG00000072235, Tuba1a, tubulin, alpha 1A, [RH, Score=933, Expect=0.0]; ENSMUSG00000023004, Tuba1b, tubulin, alpha 1B, [RH, Score=931, Expect=0.0]; ENSMUSG00000067702, Tuba3a, tubulin, alpha 3A, [RH, Score=924, Expect=0.0]; ENSMUSG00000067338, Tuba3b, tubulin, alpha 3B, [RH, Score=924, Expect=0.0]} {Dmel: FBgn0003884, alphaTub84B, alpha-Tubulin at 84B, [RH, Score=919, Expect=0.0]} {Celegans: WBGene00003175, mec-12, Tubulin alpha-3 chain Detyrosinated tubulin alpha-3 chain, [RH, Score=853, Expect=0.0]} {Smed: dd_Smed_v6_10947_0_2, dd_Smed_v6_10947_0_2, [RH, Score=931, Expect=0.0]} {RNA1509_1977, RNA1509_2612, RNA1509_34417, RNA1509_4284, RNA1509_48701} {RNA1310_10339.1, RNA1509_1977, RNA1509_2612, RNA1509_4284, RNA1509_48701} {RNA1509_1977, RNA1509_2612, RNA1509_4284, RNA1509_48701, RNA815_3971.1}

Mlig455_048316 {REF} {Length: 2382} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.27, score=229.4]; Tubulin C-terminal domain [PF03953.19, score=175.8]; Tubulin domain [PF14881.8, score=19.0]} {Human: ENSG00000167552, TUBA1A, tubulin alpha 1a, [RH, Score=933, Expect=0.0]; ENSG00000123416, TUBA1B, tubulin alpha 1b, [RH, Score=931, Expect=0.0]; ENSG00000198033, TUBA3C, tubulin alpha 3c, [RH, Score=924, Expect=0.0]; ENSG00000075886, TUBA3D, tubulin alpha 3d, [RH, Score=924, Expect=0.0]; ENSG00000152086, TUBA3E, tubulin alpha 3e, [RH, Score=907, Expect=0.0]; ENSG00000167553, TUBA1C, tubulin alpha 1c, [RH, Score=887, Expect=0.0]} {Mouse: ENSMUSG00000072235, Tuba1a, tubulin, alpha 1A, [RH, Score=933, Expect=0.0]; ENSMUSG00000023004, Tuba1b, tubulin, alpha 1B, [RH, Score=931, Expect=0.0]; ENSMUSG00000067702, Tuba3a, tubulin, alpha 3A, [RH, Score=924, Expect=0.0]; ENSMUSG00000067338, Tuba3b, tubulin, alpha 3B, [RH, Score=924, Expect=0.0]} {Dmel: FBgn0003884, alphaTub84B, alpha-Tubulin at 84B, [RH, Score=919, Expect=0.0]} {Celegans: WBGene00003175, mec-12, Tubulin alpha-3 chain Detyrosinated tubulin alpha-3 chain, [RH, Score=853, Expect=0.0]} {Smed: dd_Smed_v6_10947_0_2, dd_Smed_v6_10947_0_2, [RH, Score=931, Expect=0.0]} {RNA1509_11920, RNA1509_14713, RNA1509_34417, RNA1509_43963, RNA1509_9693} {RNA1310_10339.1, RNA1509_11920, RNA1509_14713, RNA1509_43963, RNA1509_9693} {RNA1509_11920, RNA1509_14713, RNA1509_43963, RNA1509_9693, RNA815_3971.1}
5. MligTC455_14644 635 13.24 Mlig455_012900

Neo: -

Age: Down-Up-Up

 0.962 - - - 0.962 - - Mlig455_012900 {REF} {Length: 1782} {RNA1509_19289} {RNA1310_21113.1} {RNA815_40513}
6. MligTC455_52471 566 11.79 Mlig455_048007

Neo: -

Age: logFC(26M/2M)=-0.372

 0.96 - - - 0.960 - - Mlig455_048007 {REF} {Length: 1197} {Pfam: Toxic anion resistance protein (TelA) [PF05816.13, score=18.2]} {RNA1509_22693} {RNA1310_30859, RNA1509_22693} {RNA1509_22693, RNA815_19803}
7. MligTC455_28186 542 11.3 Mlig455_035664

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_035664 {REF} {Length: 7326} {TRANSSPLICED} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=94.6]} {Mouse: ENSMUSG00000070331, Qrich2, glutamine rich 2, [Score=64.7, Expect=2e-09]} {RNA1509_51272} {RNA1310_363} {RNA815_104.1}
8. MligTC455_36149 237 4.93 Mlig455_067291

Neo: -

Age: Down-Down-Up

 0.954 - - - 0.954 - - Mlig455_067291 {REF} {Length: 4084} {RNA1509_54264} {RNA1310_5666.1} {RNA815_1552}
9. MligTC455_20050 973 20.26 Mlig455_065833

Neo: -

Age: -

Region-enriched R4: 1.188/0.00583
Region-enriched R5: 1.083/0.00271

 RMDN1 0.953 - - - 0.953 - - Mlig455_065833 {REF} {Length: 1101} {Pfam: Tetratricopeptide repeat [PF14559.8, score=26.9]; Tetratricopeptide repeat [PF13431.8, score=24.2]; Tetratricopeptide repeat [PF07719.19, score=22.1]; Tetratricopeptide repeat [PF13181.8, score=22.1]; Tetratricopeptide repeat [PF13428.8, score=21.8]; TPR repeat [PF13414.8, score=18.9]; Tetratricopeptide repeat [PF00515.30, score=18.7]} {Human: ENSG00000176623, RMDN1, regulator of microtubule dynamics 1, [RH, Score=202, Expect=2e-62]} {Mouse: ENSMUSG00000028229, Rmdn1, regulator of microtubule dynamics 1, [RH, Score=206, Expect=3e-64]} {Celegans: WBGene00009369, F33H2.6, [Score=151, Expect=1e-43]} {Smed: dd_Smed_v6_502_0_1, dd_Smed_v6_502_0_1, [Score=215, Expect=3e-69]} {RNA1509_42854} {RNA1310_19566.1} {RNA815_10877}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA