M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09285

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09285 7 0.15 Mlig455_001437

Neo: -

Age: -

 Mlig455_001437 {REF} {Length: 819} {NoTransDecoderORF} {RNA1310_40813}

Cumulative graph for MligTC455_09285

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_09285

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09285 7 0.15 Mlig455_001437

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_001437 {REF} {Length: 819} {NoTransDecoderORF} {RNA1310_40813}
2. MligTC455_35910 9 0.19 Mlig455_062107

Neo: -

Age: -

 0.994 - - - - 0.994 - Mlig455_062107 {REF} {Length: 1413} {RNA1509_19049} {RNA1310_10356.1} {RNA815_21371.1}
3. MligTC455_55135 10 0.21 Mlig455_003063

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_003063 {REF} {Length: 3} {TRANSSPLICED} {NoTransDecoderORF}
4. MligTC455_54752 15 0.3 Mlig455_062830

Neo: -

Age: -

 0.99 - - - - 0.990 - Mlig455_062830 {REF} {Length: 3} {TRANSSPLICED} {NoTransDecoderORF}
5. MligTC455_56599 8 0.17 Mlig455_046182

Neo: -

Age: -

 0.988 - - - - 0.988 - Mlig455_046182 {REF} {Length: 142} {NoTransDecoderORF}
6. MligTC455_26636 7 0.15 Mlig455_022662

Neo: -

Age: -

 SCNN1B 0.982 - - - - 0.982 - Mlig455_022662 {REF} {Length: 2733} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=236.3]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=91.7, Expect=1e-18]} {Mouse: ENSMUSG00000030873, Scnn1b, sodium channel, nonvoltage-gated 1 beta, [Score=78.2, Expect=2e-14]} {Dmel: FBgn0035785, ppk26, pickpocket 26, [RH, Score=51.2, Expect=2e-06]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=85.5, Expect=3e-17]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=124, Expect=2e-29]} {RNA1509_48864} {RNA1310_6242} {RNA815_5494}
7. MligTC455_47201 225 4.7 Mlig455_021465

Neo: -

Age: Down-Up-Up

 0.982 - - - - 0.982 - Mlig455_021465 {REF} {Length: 2176} {Pfam: C2H2 type zinc-finger (2 copies) [PF12756.9, score=31.1]; C2H2-type zinc finger [PF13894.8, score=24.1]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=23.5]; Zinc finger, C2H2 type [PF00096.28, score=23.2]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=20.9]} {Dmel: FBgn0028979, tio, tiptop, [Score=75.1, Expect=9e-14]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=132, Expect=2e-32]} {RNA1509_33943} {RNA1310_12382} {RNA815_29092}
8. MligTC455_06169 10 0.2 Mlig455_040055, Mlig455_040078

Neo: -

Age: -

 TNN 0.981 - - - - 0.981 -

Mlig455_040055 {REF} {Length: 1424} {TRANSSPLICED} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=145.6]} {Human: ENSG00000120332, TNN, tenascin N, [Score=114, Expect=3e-28]; ENSG00000171564, FGB, fibrinogen beta chain, [Score=110, Expect=3e-27]} {Mouse: ENSMUSG00000026938, Fcna, ficolin A, [Score=111, Expect=2e-28]; ENSMUSG00000033831, Fgb, fibrinogen beta chain, [Score=109, Expect=4e-27]; ENSMUSG00000033860, Fgg, fibrinogen gamma chain, [Score=109, Expect=4e-27]; ENSMUSG00000026725, Tnn, tenascin N, [Score=108, Expect=2e-26]; ENSMUSG00000015829, Tnr, tenascin R, [Score=106, Expect=8e-26]} {Dmel: FBgn0050280, CG30280, [Score=105, Expect=4e-27]} {Celegans: WBGene00020516, T15B7.1, [Score=59.3, Expect=5e-10]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=50.8, Expect=3e-08]} {RNA1310_83759}

Mlig455_040078 {REF} {Length: 1781} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=145.1]} {Human: ENSG00000120332, TNN, tenascin N, [Score=114, Expect=3e-28]; ENSG00000171564, FGB, fibrinogen beta chain, [Score=110, Expect=2e-27]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=110, Expect=5e-27]; ENSMUSG00000026938, Fcna, ficolin A, [Score=110, Expect=2e-28]; ENSMUSG00000033831, Fgb, fibrinogen beta chain, [Score=109, Expect=3e-27]; ENSMUSG00000033860, Fgg, fibrinogen gamma chain, [Score=108, Expect=4e-27]; ENSMUSG00000015829, Tnr, tenascin R, [Score=105, Expect=2e-25]} {Dmel: FBgn0050280, CG30280, [Score=105, Expect=6e-27]} {Celegans: WBGene00020516, T15B7.1, [Score=59.3, Expect=4e-10]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=50.4, Expect=3e-08]} {RNA1310_83759}
9. MligTC455_26945 4 0.09 Mlig455_021519

Neo: -

Age: -

 ANK1 0.98 - - - - 0.980 - Mlig455_021519 {REF} {Length: 4049} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=318.2]; Ankyrin repeat [PF00023.32, score=175.2]; Ankyrin repeat [PF13606.8, score=160.1]; Ankyrin repeats (many copies) [PF13637.8, score=158.4]; Ankyrin repeats (many copies) [PF13857.8, score=156.8]; PEGA domain [PF08308.13, score=25.2]; Mab-21 protein [PF03281.16, score=19.2]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=219, Expect=2e-57]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=209, Expect=1e-54]; ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=202, Expect=2e-52]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=199, Expect=3e-51]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=204, Expect=8e-53]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=198, Expect=2e-51]} {Smed: dd_Smed_v6_2072_0_6, dd_Smed_v6_2072_0_6, [Score=205, Expect=1e-53]} {RNA1509_19588} {RNA1310_2850.1} {RNA815_6489}
10. MligTC455_33985 25 0.52 Mlig455_039138

Neo: -

Age: Up-Down-Down

 0.98 - - - - 0.980 - Mlig455_039138 {REF} {Length: 3856} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=56.2]} {RNA1509_11292} {RNA1310_3384} {RNA815_776.1}
11. MligTC455_24418 12 0.24 Mlig455_043094

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_043094 {REF} {Length: 3178} {RNA1509_55157} {RNA1310_33181} {RNA815_16598}
12. MligTC455_10186 14 0.29 Mlig455_009058, Mlig455_041525

Neo: -

Age: -

 0.976 - - - - 0.976 -

Mlig455_009058 {REF} {Length: 125} {NoTransDecoderORF} {RNA1310_74893} {RNA815_14902}

Mlig455_041525 {REF} {Length: 848} {NoTransDecoderORF} {RNA1509_28375} {RNA1310_66841} {RNA815_36178}
13. MligTC455_05104 7 0.15 Mlig455_044215

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_044215 {REF} {Length: 866} {NoTransDecoderORF} {RNA1509_15277} {RNA1310_22069} {RNA815_17936.1}
14. MligTC455_00683 8 0.17 Mlig455_044492

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_044492 {REF} {Length: 415} {NoTransDecoderORF} {RNA1509_59537} {RNA1310_67575}
15. MligTC455_09038 6 0.12 Mlig455_026690

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_026690 {REF} {Length: 1998} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=18.0]} {Smed: dd_Smed_v6_29877_0_1, dd_Smed_v6_29877_0_1, [Score=89.4, Expect=1e-19]} {RNA1310_45778.1}
16. MligTC455_36174 28 0.59 Mlig455_053124

Neo: Germline

Age: -

 0.965 - - - - 0.965 - Mlig455_053124 {REF} {Length: 1402} {RNA1509_56062} {RNA1310_50996} {RNA815_48398}
17. MligTC455_22807 9 0.18 Mlig455_026775

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_026775 {REF} {Length: 2554} {NoTransDecoderORF} {RNA1509_49973} {RNA1310_62221} {RNA815_10554.1}
18. MligTC455_49198 7 0.14 Mlig455_002595

Neo: -

Age: -

 PRR9 0.96 - - - - 0.960 - Mlig455_002595 {REF} {Length: 1863} {Human: ENSG00000203783, PRR9, proline rich 9, [RH, Score=50.1, Expect=1e-07]}
19. MligTC455_08259 5 0.1 Mlig455_061083

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_061083 {REF} {Length: 1503} {NoTransDecoderORF} {RNA1310_87726}
20. MligTC455_23374 134 2.78 Mlig455_016409

Neo: -

Age: -

 CDC34 0.951 - - - - 0.951 - Mlig455_016409 {REF} {Length: 5157} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=154.3]} {Human: ENSG00000099804, CDC34, cell division cycle 34, [RH, Score=280, Expect=2e-95]; ENSG00000107341, UBE2R2, ubiquitin conjugating enzyme E2 R2, [RH, Score=277, Expect=4e-94]} {Mouse: ENSMUSG00000020307, Cdc34, cell division cycle 34, [RH, Score=279, Expect=6e-95]; ENSMUSG00000036241, Ube2r2, ubiquitin-conjugating enzyme E2R 2, [RH, Score=277, Expect=3e-94]; ENSMUSG00000020870, Cdc34b, cell division cycle 34B, [RH, Score=273, Expect=1e-92]} {Dmel: FBgn0036516, CG7656, [RH, Score=281, Expect=1e-94]} {Celegans: WBGene00006702, ubc-3, UBiquitin Conjugating enzyme, [RH, Score=264, Expect=3e-89]} {Smed: dd_Smed_v6_8367_0_1, dd_Smed_v6_8367_0_1, [RH, Score=259, Expect=3e-87]} {RNA1509_31608} {RNA1310_20391} {RNA815_14254}
21. MligTC455_37993 5 0.11 Mlig455_014151

Neo: -

Age: logFC(26M/2M)=-0.305

 0.95 - - - - 0.950 - Mlig455_014151 {REF} {Length: 2067} {Pfam: Wax ester synthase-like Acyl-CoA acyltransferase domain [PF03007.18, score=43.9]; Condensation domain [PF00668.22, score=21.0]} {Smed: dd_Smed_v6_7004_0_1, dd_Smed_v6_7004_0_1, [Score=49.7, Expect=2e-06]} {RNA1509_4720} {RNA1310_6102} {RNA815_886.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA