M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49198

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49198 7 0.14 Mlig455_002595

Neo: -

Age: -

 PRR9 Mlig455_002595 {REF} {Length: 1863} {Human: ENSG00000203783, PRR9, proline rich 9, [RH, Score=50.1, Expect=1e-07]}

Cumulative graph for MligTC455_49198

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_49198

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49198 7 0.14 Mlig455_002595

Neo: -

Age: -

 PRR9 1 - - - - 1.000 - Mlig455_002595 {REF} {Length: 1863} {Human: ENSG00000203783, PRR9, proline rich 9, [RH, Score=50.1, Expect=1e-07]}
2. MligTC455_06169 10 0.2 Mlig455_040055, Mlig455_040078

Neo: -

Age: -

 TNN 0.996 - - - - 0.996 -

Mlig455_040055 {REF} {Length: 1424} {TRANSSPLICED} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=145.6]} {Human: ENSG00000120332, TNN, tenascin N, [Score=114, Expect=3e-28]; ENSG00000171564, FGB, fibrinogen beta chain, [Score=110, Expect=3e-27]} {Mouse: ENSMUSG00000026938, Fcna, ficolin A, [Score=111, Expect=2e-28]; ENSMUSG00000033831, Fgb, fibrinogen beta chain, [Score=109, Expect=4e-27]; ENSMUSG00000033860, Fgg, fibrinogen gamma chain, [Score=109, Expect=4e-27]; ENSMUSG00000026725, Tnn, tenascin N, [Score=108, Expect=2e-26]; ENSMUSG00000015829, Tnr, tenascin R, [Score=106, Expect=8e-26]} {Dmel: FBgn0050280, CG30280, [Score=105, Expect=4e-27]} {Celegans: WBGene00020516, T15B7.1, [Score=59.3, Expect=5e-10]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=50.8, Expect=3e-08]} {RNA1310_83759}

Mlig455_040078 {REF} {Length: 1781} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=145.1]} {Human: ENSG00000120332, TNN, tenascin N, [Score=114, Expect=3e-28]; ENSG00000171564, FGB, fibrinogen beta chain, [Score=110, Expect=2e-27]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=110, Expect=5e-27]; ENSMUSG00000026938, Fcna, ficolin A, [Score=110, Expect=2e-28]; ENSMUSG00000033831, Fgb, fibrinogen beta chain, [Score=109, Expect=3e-27]; ENSMUSG00000033860, Fgg, fibrinogen gamma chain, [Score=108, Expect=4e-27]; ENSMUSG00000015829, Tnr, tenascin R, [Score=105, Expect=2e-25]} {Dmel: FBgn0050280, CG30280, [Score=105, Expect=6e-27]} {Celegans: WBGene00020516, T15B7.1, [Score=59.3, Expect=4e-10]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=50.4, Expect=3e-08]} {RNA1310_83759}
3. MligTC455_00683 8 0.17 Mlig455_044492

Neo: -

Age: -

 0.993 - - - - 0.993 - Mlig455_044492 {REF} {Length: 415} {NoTransDecoderORF} {RNA1509_59537} {RNA1310_67575}
4. MligTC455_09038 6 0.12 Mlig455_026690

Neo: -

Age: -

 0.993 - - - - 0.993 - Mlig455_026690 {REF} {Length: 1998} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=18.0]} {Smed: dd_Smed_v6_29877_0_1, dd_Smed_v6_29877_0_1, [Score=89.4, Expect=1e-19]} {RNA1310_45778.1}
5. MligTC455_06281 16 0.34 Mlig455_028311

Neo: -

Age: -

 0.99 - - - - 0.990 - Mlig455_028311 {REF} {Length: 199} {NoTransDecoderORF} {RNA1509_41075} {RNA1310_63673.1} {RNA815_48915}
6. MligTC455_02404 4 0.09 Mlig455_010289

Neo: -

Age: -

 0.986 - - - - 0.986 - Mlig455_010289 {REF} {Length: 219} {NoTransDecoderORF} {RNA1310_61437}
7. MligTC455_56311 4 0.07 Mlig455_065943

Neo: -

Age: -

 0.986 - - - - 0.986 - Mlig455_065943 {REF} {Length: 440} {Pfam: Heme NO binding associated [PF07701.16, score=88.6]} {Dmel: FBgn0038295, Gyc88E, Guanylyl cyclase at 88E, [Score=66.2, Expect=3e-13]} {Celegans: WBGene00001551, gcy-31, Soluble guanylate cyclase gcy-31, [Score=46.6, Expect=1e-06]} {Smed: dd_Smed_v6_18878_0_1, dd_Smed_v6_18878_0_1, [Score=113, Expect=3e-31]} {RNA1310_80062} {RNA815_41754}
8. MligTC455_00117 11 0.24 Mlig455_062579

Neo: -

Age: -

 0.985 - - - - 0.985 - Mlig455_062579 {REF} {Length: 226} {NoTransDecoderORF} {RNA1310_132293}
9. MligTC455_10194 11 0.23 Mlig455_032671

Neo: -

Age: -

 ALKBH3 0.985 - - - - 0.985 - Mlig455_032671 {REF} {Length: 1189} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=89.0]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=100, Expect=1e-23]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=103, Expect=6e-25]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [Score=95.5, Expect=3e-22]} {RNA1509_52195} {RNA1310_39725}
10. MligTC455_33129 36 0.75 Mlig455_057498

Neo: -

Age: -

 TACR2 0.985 - - - - 0.985 - Mlig455_057498 {REF} {Length: 3137} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=132.1]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=24.9]} {Human: ENSG00000075073, TACR2, tachykinin receptor 2, [Score=122, Expect=6e-30]; ENSG00000056291, NPFFR2, neuropeptide FF receptor 2, [Score=121, Expect=2e-29]} {Mouse: ENSMUSG00000035528, Npffr2, neuropeptide FF receptor 2, [Score=129, Expect=2e-32]} {Dmel: FBgn0037408, NPFR, Neuropeptide F receptor, [Score=126, Expect=3e-31]} {Celegans: WBGene00016110, npr-11, Putative neuropeptide Y receptor 11, [Score=134, Expect=1e-34]} {Smed: dd_Smed_v6_17752_0_1, dd_Smed_v6_17752_0_1, [Score=207, Expect=2e-61]} {RNA1310_49566} {RNA815_29712}
11. MligTC455_06429 11 0.23 Mlig455_036363

Neo: -

Age: -

 0.982 - - - - 0.982 - Mlig455_036363 {REF} {Length: 672} {NoTransDecoderORF} {RNA1509_33228} {RNA1310_23229}
12. MligTC455_07148 10 0.21 Mlig455_010819

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_010819 {REF} {Length: 296} {NoTransDecoderORF}
13. MligTC455_50620 10 0.22 Mlig455_050056

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_050056 {REF} {Length: 1732} {NoTransDecoderORF} {RNA1509_2617} {RNA1310_104916} {RNA815_36229}
14. MligTC455_12715 22 0.45 Mlig455_053590

Neo: -

Age: -

 0.98 - - - - 0.980 - Mlig455_053590 {REF} {Length: 956} {NoTransDecoderORF} {RNA1509_41176} {RNA1310_38751} {RNA815_38348}
15. MligTC455_55135 10 0.21 Mlig455_003063

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_003063 {REF} {Length: 3} {TRANSSPLICED} {NoTransDecoderORF}
16. MligTC455_54752 15 0.3 Mlig455_062830

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_062830 {REF} {Length: 3} {TRANSSPLICED} {NoTransDecoderORF}
17. MligTC455_06677 36 0.75 Mlig455_046172

Neo: -

Age: Down-Up-Down

 0.974 - - - - 0.974 - Mlig455_046172 {REF} {Length: 571} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_30549} {RNA1310_22209.1} {RNA815_17275}
18. MligTC455_26636 7 0.15 Mlig455_022662

Neo: -

Age: -

 SCNN1B 0.974 - - - - 0.974 - Mlig455_022662 {REF} {Length: 2733} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=236.3]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=91.7, Expect=1e-18]} {Mouse: ENSMUSG00000030873, Scnn1b, sodium channel, nonvoltage-gated 1 beta, [Score=78.2, Expect=2e-14]} {Dmel: FBgn0035785, ppk26, pickpocket 26, [RH, Score=51.2, Expect=2e-06]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=85.5, Expect=3e-17]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=124, Expect=2e-29]} {RNA1509_48864} {RNA1310_6242} {RNA815_5494}
19. MligTC455_19543 6 0.12 Mlig455_058798

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_058798 {REF} {Length: 1327} {NoTransDecoderORF} {RNA1509_37415} {RNA1310_49986.1} {RNA815_34381}
20. MligTC455_10186 14 0.29 Mlig455_009058, Mlig455_041525

Neo: -

Age: -

 0.97 - - - - 0.970 -

Mlig455_009058 {REF} {Length: 125} {NoTransDecoderORF} {RNA1310_74893} {RNA815_14902}

Mlig455_041525 {REF} {Length: 848} {NoTransDecoderORF} {RNA1509_28375} {RNA1310_66841} {RNA815_36178}
21. MligTC455_14427 85 1.78 Mlig455_039701

Neo: -

Age: logFC(26M/2M)=0.668

 0.968 - - - - 0.968 - Mlig455_039701 {REF} {Length: 2331} {RNA1509_27161} {RNA1310_5954, RNA1509_27161} {RNA1509_27161, RNA815_17866}
22. MligTC455_50621 11 0.23 Mlig455_050101

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_050101 {REF} {Length: 1078} {NoTransDecoderORF} {RNA1509_2617} {RNA1310_104916} {RNA815_36229}
23. MligTC455_44239 43 0.9 Mlig455_002480

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_002480 {REF} {Length: 1329} {NoTransDecoderORF} {RNA1509_49118} {RNA1310_34083} {RNA815_11074.2}
24. MligTC455_00286 7 0.14 Mlig455_001697

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_001697 {REF} {Length: 225} {NoTransDecoderORF}
25. MligTC455_09285 7 0.15 Mlig455_001437

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_001437 {REF} {Length: 819} {NoTransDecoderORF} {RNA1310_40813}
26. MligTC455_08259 5 0.1 Mlig455_061083

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_061083 {REF} {Length: 1503} {NoTransDecoderORF} {RNA1310_87726}
27. MligTC455_05104 7 0.15 Mlig455_044215

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_044215 {REF} {Length: 866} {NoTransDecoderORF} {RNA1509_15277} {RNA1310_22069} {RNA815_17936.1}
28. MligTC455_14748 61 1.27 Mlig455_031196

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_031196 {REF} {Length: 724} {NoTransDecoderORF} {RNA1509_5493} {RNA1310_52179} {RNA815_26975}
29. MligTC455_56599 8 0.17 Mlig455_046182

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_046182 {REF} {Length: 142} {NoTransDecoderORF}
30. MligTC455_18278 23 0.48 Mlig455_032342

Neo: -

Age: Down-Up-Down

 0.954 - - - - 0.954 - Mlig455_032342 {REF} {Length: 2499} {RNA1310_12031} {RNA815_8717.1}
31. MligTC455_11119 9 0.2 Mlig455_029937

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_029937 {REF} {Length: 1401} {NoTransDecoderORF} {RNA1310_137032}
32. MligTC455_47201 225 4.7 Mlig455_021465

Neo: -

Age: Down-Up-Up

 0.952 - - - - 0.952 - Mlig455_021465 {REF} {Length: 2176} {Pfam: C2H2 type zinc-finger (2 copies) [PF12756.9, score=31.1]; C2H2-type zinc finger [PF13894.8, score=24.1]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=23.5]; Zinc finger, C2H2 type [PF00096.28, score=23.2]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=20.9]} {Dmel: FBgn0028979, tio, tiptop, [Score=75.1, Expect=9e-14]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=132, Expect=2e-32]} {RNA1509_33943} {RNA1310_12382} {RNA815_29092}
33. MligTC455_48178 56 1.16 Mlig455_006028

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_006028 {REF} {Length: 1616} {RNA1310_30835} {RNA815_36438.1}
34. MligTC455_49008 44 0.91 Mlig455_012310, Mlig455_012328

Neo: -

Age: -

 0.951 - - - - 0.951 -

Mlig455_012310 {REF} {Length: 2047} {TRANSSPLICED} {Pfam: Kyakuja-Dileera-Zisupton transposase [PF18758.3, score=72.9]} {RNA1310_56349} {RNA815_49596}

Mlig455_012328 {REF} {Length: 2514} {TRANSSPLICED} {RNA1310_56349} {RNA815_35712}
35. MligTC455_12701 16 0.34 Mlig455_040318

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_040318 {REF} {Length: 790} {NoTransDecoderORF} {RNA1509_51270} {RNA1310_46161.1} {RNA815_36465.1}
36. MligTC455_49542 51 1.07 Mlig455_048054

Neo: -

Age: -

 AC243734.1 0.95 - - - - 0.950 - Mlig455_048054 {REF} {Length: 2045} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=187.0]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=173.6]} {Human: ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=394, Expect=5e-132]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=394, Expect=5e-132]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=390, Expect=1e-130]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=395, Expect=5e-133]} {Dmel: FBgn0028875, nAChRalpha5, nicotinic Acetylcholine Receptor alpha5, [Score=447, Expect=2e-149]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=377, Expect=5e-126]} {Smed: dd_Smed_v6_8058_0_1, dd_Smed_v6_8058_0_1, [Score=444, Expect=6e-152]} {RNA1509_57591} {RNA1310_48307.1} {RNA815_15627}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA