M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09309

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09309 4 0.09 Mlig455_004380, Mlig455_037194

Neo: -

Age: -

Mlig455_004380 {REF} {Length: 1098} {tRNA: Ala(TGC),pseudo, score=24.3} {Pfam: zinc-binding in reverse transcriptase [PF13966.8, score=27.6]} {RNA1509_44544} {RNA1310_38172.1} {RNA815_15779}

Mlig455_037194 {REF} {Length: 533} {Pfam: zinc-binding in reverse transcriptase [PF13966.8, score=28.1]} {RNA1310_38172.1} {RNA815_15779}

Cumulative graph for MligTC455_09309

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_09309

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09309 4 0.09 Mlig455_004380, Mlig455_037194

Neo: -

Age: -

 1 - 1.000 - - - -

Mlig455_004380 {REF} {Length: 1098} {tRNA: Ala(TGC),pseudo, score=24.3} {Pfam: zinc-binding in reverse transcriptase [PF13966.8, score=27.6]} {RNA1509_44544} {RNA1310_38172.1} {RNA815_15779}

Mlig455_037194 {REF} {Length: 533} {Pfam: zinc-binding in reverse transcriptase [PF13966.8, score=28.1]} {RNA1310_38172.1} {RNA815_15779}
2. MligTC455_06246 19 0.39 Mlig455_062560

Neo: -

Age: -

 0.996 - 0.996 - - - - Mlig455_062560 {REF} {Length: 941} {NoTransDecoderORF} {RNA1310_117757} {RNA815_61496}
3. MligTC455_03825 12 0.25 Mlig455_057358

Neo: -

Age: Up-Down-Up

 0.994 - 0.994 - - - - Mlig455_057358 {REF} {Length: 1276} {RNA1310_49208} {RNA815_40627}
4. MligTC455_00007 21 0.44 Mlig455_011366

Neo: -

Age: -

Region-enriched R4: 4.653/0.03334

 0.992 - 0.992 - - - - Mlig455_011366 {REF} {Length: 385} {NoTransDecoderORF} {RNA1509_35901, RNA1509_55800} {RNA1310_1066, RNA1509_35901} {RNA1509_35901, RNA815_51202}
5. MligTC455_24651 4 0.08 Mlig455_051474

Neo: -

Age: -

 NYNRIN 0.99 - 0.990 - - - - Mlig455_051474 {REF} {Length: 3215} {Pfam: Integrase zinc binding domain [PF17921.3, score=56.9]; Integrase core domain [PF00665.28, score=47.9]; H2C2 zinc finger [PF09337.12, score=19.1]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=66.2, Expect=6e-11]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=67.8, Expect=1e-11]} {RNA1509_35604} {RNA1310_27473} {RNA815_26012}
6. MligTC455_01403 5 0.1 Mlig455_045428

Neo: -

Age: -

 0.986 - 0.986 - - - - Mlig455_045428 {REF} {Length: 289} {NoTransDecoderORF} {RNA1310_41013.2} {RNA815_42157}
7. MligTC455_36698 41 0.85 Mlig455_020379, Mlig455_020438

Neo: -

Age: -

Region-enriched R4: 4.050/0.03458

 0.986 - 0.986 - - - -

Mlig455_020379 {REF} {Length: 1748} {Celegans: WBGene00007723, C25F9.2, [Score=77.8, Expect=7e-17]} {RNA1509_21495} {RNA1310_13315} {RNA815_8935}

Mlig455_020438 {REF} {Length: 2872} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=53.1]} {Celegans: WBGene00007723, C25F9.2, [Score=206, Expect=7e-57]} {RNA1509_21495} {RNA1310_13315} {RNA815_8935}
8. MligTC455_49563 96 2.01 Mlig455_044595

Neo: Germline

Age: Up-Down-Down

 0.984 - 0.984 - - - - Mlig455_044595 {REF} {Length: 3287} {Pfam: Thrombospondin type 1 domain [PF00090.21, score=27.3]; Spondin-like TSP1 domain [PF19028.2, score=22.7]} {Smed: dd_Smed_v6_20221_0_1, dd_Smed_v6_20221_0_1, [Score=72.0, Expect=4e-13]} {RNA1509_33920, RNA1509_43518} {RNA1310_11444, RNA1509_33920, RNA1509_43518} {RNA1509_33920, RNA1509_43518, RNA815_5322}
9. MligTC455_05660 5 0.1 Mlig455_013850

Neo: -

Age: -

 0.983 - 0.983 - - - - Mlig455_013850 {REF} {Length: 1593} {RNA1310_26225} {RNA815_41464}
10. MligTC455_07890 39 0.81 Mlig455_025968

Neo: -

Age: -

Regeneration-downregulated R4: -5.998

Regeneration-depleted R4: -5.998

 0.98 - 0.980 - - - - Mlig455_025968 {REF} {Length: 244} {NoTransDecoderORF} {RNA1509_47328} {RNA1310_29900} {RNA815_13457}
11. MligTC455_11678 29 0.6 Mlig455_003165

Neo: -

Age: -

Region-enriched R7: 5.398/0.01168

 0.978 - 0.978 - - - - Mlig455_003165 {REF} {Length: 1487} {RNA1509_45511} {RNA1310_27553} {RNA815_23907.2}
12. MligTC455_12115 8 0.18 Mlig455_038568, Mlig455_052186

Neo: -

Age: -

 0.978 - 0.978 - - - -

Mlig455_038568 {REF} {Length: 1308} {RNA1509_56062} {RNA1310_48385.1}

Mlig455_052186 {REF} {Length: 898} {RNA1509_56062} {RNA1310_92083}
13. MligTC455_22358 6 0.13 Mlig455_004312

Neo: -

Age: -

 0.978 - 0.978 - - - - Mlig455_004312 {REF} {Length: 289} {NoTransDecoderORF} {RNA1509_47318} {RNA1310_10380.1} {RNA815_53787}
14. MligTC455_01341 12 0.24 Mlig455_040430

Neo: -

Age: -

 0.975 - 0.975 - - - - Mlig455_040430 {REF} {Length: 533} {NoTransDecoderORF} {RNA1310_5295.2} {RNA815_4431}
15. MligTC455_01342 16 0.34 Mlig455_040462

Neo: -

Age: -

 0.975 - 0.975 - - - - Mlig455_040462 {REF} {Length: 974} {TRANSSPLICED} {Pfam: Family of unknown function (DUF5641) [PF18701.3, score=65.0]} {RNA1509_30133} {RNA1310_5295.2} {RNA815_4431}
16. MligTC455_14098 17 0.36 Mlig455_017789

Neo: -

Age: -

 0.975 - 0.975 - - - - Mlig455_017789 {REF} {Length: 985} {RNA1509_36030} {RNA1310_69203.2} {RNA815_32123}
17. MligTC455_24105 8 0.18 Mlig455_005937

Neo: -

Age: -

 MARCH6 0.975 - 0.975 - - - - Mlig455_005937 {REF} {Length: 706} {Pfam: RING-variant domain [PF12906.9, score=44.3]} {Human: ENSG00000145495, MARCH6, membrane associated ring-CH-type finger 6, [Score=45.4, Expect=4e-06]} {Mouse: ENSMUSG00000039100, March6, membrane-associated ring finger (C3HC4) 6, [Score=45.4, Expect=2e-06]} {Celegans: WBGene00018847, marc-6, MARCH (Membrane-Associated Ring finger (C3HC4)) homolog, [Score=42.7, Expect=1e-05]} {RNA1509_7428} {RNA1310_46233} {RNA815_51275}
18. MligTC455_45161 29 0.6 Mlig455_027613

Neo: Irradiation

Age: -

 WSCD2 0.975 - 0.975 - - - - Mlig455_027613 {REF} {Length: 1427} {Pfam: WSC domain [PF01822.21, score=56.9]; PAN domain [PF00024.28, score=21.6]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=54.3, Expect=4e-08]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=56.6, Expect=4e-09]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=61.2, Expect=8e-11]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=52.8, Expect=4e-08]} {RNA1509_29094} {RNA1310_36326} {RNA815_27950.1}
19. MligTC455_33451 55 1.15 Mlig455_061693

Neo: Germline

Age: Down-Down-Up

 0.974 - 0.974 - - - - Mlig455_061693 {REF} {Length: 1301} {Pfam: Family of unknown function (DUF6453) [PF20051.1, score=19.4]} {RNA1509_47001} {RNA1310_55207.1} {RNA815_29866}
20. MligTC455_07133 15 0.31 Mlig455_045503

Neo: -

Age: -

 0.972 - 0.972 - - - - Mlig455_045503 {REF} {Length: 1418} {RNA1310_14234} {RNA815_30147}
21. MligTC455_00200 3 0.07 Mlig455_001460

Neo: -

Age: -

 0.971 - 0.971 - - - - Mlig455_001460 {REF} {Length: 513} {RNA1509_5872} {RNA1310_60298.2} {RNA815_59763}
22. MligTC455_02534 4 0.08 Mlig455_062249

Neo: -

Age: -

 0.971 - 0.971 - - - - Mlig455_062249 {REF} {Length: 1521} {NoTransDecoderORF} {RNA1509_4161} {RNA1310_65030} {RNA815_853}
23. MligTC455_30703 34 0.71 Mlig455_042855

Neo: Germline

Age: -

 0.97 - 0.970 - - - - Mlig455_042855 {REF} {Length: 3021} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=119.4]} {RNA1509_6501} {RNA1310_3605.1} {RNA815_33122}
24. MligTC455_31437 3 0.07 Mlig455_070586

Neo: Germline

Age: Down-Up-Down

 0.969 - 0.969 - - - - Mlig455_070586 {REF} {Length: 1339} {RNA1310_32184} {RNA815_39414}
25. MligTC455_37410 77 1.59 Mlig455_044543

Neo: Irradiation

Age: -

Region-specific R4: 5.465

Region-enriched R4: 2.505/0.04575

 0.968 - 0.968 - - - - Mlig455_044543 {REF} {Length: 3070} {RNA1509_51360} {RNA1310_2237.1} {RNA815_726.1}
26. MligTC455_04669 26 0.54 Mlig455_069462

Neo: Germline

Age: -

Region-enriched R4: 6.196/0.00208

 0.966 - 0.966 - - - - Mlig455_069462 {REF} {Length: 738} {RNA1509_24791} {RNA1310_64927} {RNA815_45377.1}
27. MligTC455_05610 4 0.08 Mlig455_030121

Neo: -

Age: -

 0.962 - 0.962 - - - - Mlig455_030121 {REF} {Length: 395} {NoTransDecoderORF} {RNA1310_139202}
28. MligTC455_07350 69 1.43 Mlig455_010387, Mlig455_028017

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-1.679

Region-enriched R4: 4.964/0.00341

 0.962 - 0.962 - - - -

Mlig455_010387 {REF} {Length: 2742} {RNA1310_57879} {RNA815_55513}

Mlig455_028017 {REF} {Length: 2442} {RNA1310_57879}
29. MligTC455_02680 11 0.22 Mlig455_005964, Mlig455_005968

Neo: -

Age: Up-Down-Up

 0.96 - 0.960 - - - -

Mlig455_005964 {REF} {Length: 1371}

Mlig455_005968 {REF} {Length: 1371}
30. MligTC455_03186 6 0.12 Mlig455_047264, Mlig455_047317

Neo: -

Age: -

 0.96 - 0.960 - - - -

Mlig455_047264 {REF} {Length: 2313} {TRANSSPLICED} {Pfam: OST-HTH/LOTUS domain [PF12872.9, score=39.5]; Mitochondrial inner membrane protein [PF09731.11, score=21.7]; Enhancer of polycomb-like [PF10513.11, score=20.9]} {RNA1509_27943} {RNA1310_17912.2} {RNA815_23339}

Mlig455_047317 {REF} {Length: 3723} {TRANSSPLICED} {Pfam: OST-HTH/LOTUS domain [PF12872.9, score=38.5]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=20.7]} {RNA1509_27943} {RNA1310_17912.2, RNA1509_27943} {RNA1509_27943, RNA815_23339}
31. MligTC455_09315 12 0.25 Mlig455_037193

Neo: -

Age: -

 0.96 - 0.960 - - - - Mlig455_037193 {REF} {Length: 707} {tRNA: Val(CAC),pseudo, score=24.3} {RNA1509_47157} {RNA1310_38172.1} {RNA815_15779}
32. MligTC455_13313 15 0.32 Mlig455_044729

Neo: -

Age: -

 0.96 - 0.960 - - - - Mlig455_044729 {REF} {Length: 760} {NoTransDecoderORF} {RNA1310_80873} {RNA815_37906}
33. MligTC455_14433 53 1.09 Mlig455_004533

Neo: Irradiation

Age: Up-Down-Down

 FAM78B 0.959 - 0.959 - - - - Mlig455_004533 {REF} {Length: 2147} {Human: ENSG00000188859, FAM78B, family with sequence similarity 78 member B, [Score=116, Expect=1e-29]} {Mouse: ENSMUSG00000060568, Fam78b, family with sequence similarity 78, member B, [Score=116, Expect=8e-30]} {Smed: dd_Smed_v6_50260_0_1, dd_Smed_v6_50260_0_1, [Score=79.3, Expect=6e-18]} {RNA1509_1086} {RNA1310_23657.1} {RNA815_9864.1}
34. MligTC455_14727 11 0.23 Mlig455_062713

Neo: -

Age: -

 0.959 - 0.959 - - - - Mlig455_062713 {REF} {Length: 1696} {NoTransDecoderORF} {RNA1509_39955} {RNA1310_82169} {RNA815_46001}
35. MligTC455_38628 6 0.12 Mlig455_066441

Neo: -

Age: -

 0.959 - 0.959 - - - - Mlig455_066441 {REF} {Length: 225} {TRANSSPLICED}
36. MligTC455_02854 3 0.07 Mlig455_018027

Neo: -

Age: -

 0.958 - 0.958 - - - - Mlig455_018027 {REF} {Length: 1395} {RNA1310_19991}
37. MligTC455_03542 16 0.34 Mlig455_028898

Neo: Irradiation

Age: Up-Down-Down

 0.958 - 0.958 - - - - Mlig455_028898 {REF} {Length: 1695} {RNA1509_23422} {RNA1310_24001} {RNA815_7385}
38. MligTC455_13978 388 8.08 Mlig455_007531, Mlig455_024787, Mlig455_030583

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 6.585

Region-enriched R4: 2.995/0.00485

 0.958 - 0.958 - - - -

Mlig455_007531 {REF} {Length: 2595} {RNA1509_32577} {RNA1310_9161.1} {RNA815_24289}

Mlig455_024787 {REF} {Length: 3379} {RNA1509_32577} {RNA1310_9161.1} {RNA815_24289}

Mlig455_030583 {REF} {Length: 3481} {RNA1509_32577, RNA1509_55493, RNA1509_59638} {RNA1310_9161.1, RNA1509_32577, RNA1509_55493, RNA1509_59638} {RNA1509_32577, RNA1509_55493, RNA1509_59638, RNA815_24289}
39. MligTC455_19828 10 0.21 Mlig455_044131

Neo: Germline

Age: -

 CSNK1A1 0.958 - 0.958 - - - - Mlig455_044131 {REF} {Length: 2908} {Human: ENSG00000113712, CSNK1A1, casein kinase 1 alpha 1, [Score=59.7, Expect=9e-09]} {Mouse: ENSMUSG00000024576, Csnk1a1, casein kinase 1, alpha 1, [Score=59.7, Expect=6e-09]} {Dmel: FBgn0037325, CG12147, [Score=62.0, Expect=1e-09]} {Celegans: WBGene00002202, kin-19, Casein kinase I isoform alpha, [Score=68.2, Expect=5e-12]} {Smed: dd_Smed_v6_12103_0_1, dd_Smed_v6_12103_0_1, [Score=65.5, Expect=3e-11]} {RNA1509_32782} {RNA1310_8866.1} {RNA815_11402.1}
40. MligTC455_47321 11 0.23 Mlig455_053680

Neo: -

Age: -

 0.958 - 0.958 - - - - Mlig455_053680 {REF} {Length: 522} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_83324}
41. MligTC455_04519 25 0.52 Mlig455_063942

Neo: -

Age: -

 0.957 - 0.957 - - - - Mlig455_063942 {REF} {Length: 479} {RNA1509_54738} {RNA1310_89291, RNA1509_54738} {RNA1509_54738, RNA815_46717}
42. MligTC455_05042 25 0.52 Mlig455_034061

Neo: -

Age: -

Regeneration-downregulated R4: -4.663

Regeneration-depleted R4: -4.663

 0.957 - 0.957 - - - - Mlig455_034061 {REF} {Length: 767} {NoTransDecoderORF} {RNA1310_34081} {RNA815_16786}
43. MligTC455_39172 41 0.86 Mlig455_043927

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R4: 3.276/0.02206

 0.955 - 0.955 - - - - Mlig455_043927 {REF} {Length: 1153} {RNA1509_1029} {RNA1310_32039} {RNA815_16431}
44. MligTC455_04518 18 0.38 Mlig455_029869

Neo: Germline

Age: -

 0.954 - 0.954 - - - - Mlig455_029869 {REF} {Length: 463} {RNA1509_54738} {RNA1310_89291} {RNA815_46717}
45. MligTC455_27576 11 0.23 Mlig455_006736

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.495

 SCNN1G 0.953 - 0.953 - - - - Mlig455_006736 {REF} {Length: 1992} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=195.4]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=80.1, Expect=3e-15]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=76.3, Expect=3e-14]} {Celegans: WBGene00012137, asic-2, Degenerin-like protein asic-2, [Score=74.3, Expect=7e-14]} {Smed: dd_Smed_v6_17245_0_1, dd_Smed_v6_17245_0_1, [Score=90.5, Expect=4e-19]} {RNA1509_36956} {RNA1310_12232.1} {RNA815_4577.1}
46. MligTC455_09796 8 0.16 Mlig455_002871

Neo: -

Age: Up-Down-Down

 0.952 - 0.952 - - - - Mlig455_002871 {REF} {Length: 3330} {Pfam: Sodium:solute symporter family [PF00474.19, score=46.9]} {Smed: dd_Smed_v6_35684_0_1, dd_Smed_v6_35684_0_1, [RH, Score=382, Expect=5e-127]} {RNA1509_52036} {RNA1310_27724} {RNA815_26006}
47. MligTC455_12273 7 0.15 Mlig455_020187

Neo: -

Age: -

 0.952 - 0.952 - - - - Mlig455_020187 {REF} {Length: 836} {Pfam: Uteroglobin family [PF01099.19, score=20.9]} {RNA1310_78326.1} {RNA815_36022}
48. MligTC455_36361 38 0.78 Mlig455_031820, Mlig455_047672

Neo: -

Age: -

Region-enriched R4: 3.174/0.04287

 0.952 - 0.952 - - - -

Mlig455_031820 {REF} {Length: 2062} {RNA1509_20555} {RNA1310_88884} {RNA815_46995}

Mlig455_047672 {REF} {Length: 2452} {NoTransDecoderORF} {RNA1509_10844} {RNA1310_88884} {RNA815_46995}
49. MligTC455_09231 16 0.33 Mlig455_048496, Mlig455_049940

Neo: Int S/G2/M

Age: -

 SETMAR 0.95 - 0.950 - - - -

Mlig455_048496 {REF} {Length: 2565} {Pfam: DDE superfamily endonuclease [PF13358.8, score=32.1]; Homeodomain-like domain [PF13565.8, score=27.3]; Winged helix-turn helix [PF13551.8, score=24.8]; HTH domain in Mos1 transposase [PF17906.3, score=21.7]; Transposase (partial DDE domain) [PF01359.20, score=20.3]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=131, Expect=2e-33]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=60.8, Expect=1e-11]} {RNA1509_18055} {RNA1310_20178} {RNA815_58634}

Mlig455_049940 {REF} {Length: 1736} {Pfam: DDE superfamily endonuclease [PF13358.8, score=34.1]; Transposase (partial DDE domain) [PF01359.20, score=22.4]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=70.1, Expect=8e-14]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=59.3, Expect=6e-12]} {RNA1509_18055} {RNA1310_42187.1} {RNA815_58634}
50. MligTC455_21433 44 0.92 Mlig455_016479

Neo: Germline

Age: -

Region-enriched R4: 3.381/0.02270

 0.95 - 0.950 - - - - Mlig455_016479 {REF} {Length: 1912} {RNA1509_59114} {RNA1310_21929.1} {RNA815_18147}
51. MligTC455_27225 34 0.71 Mlig455_051572

Neo: -

Age: Down-Up-Down

 HELZ2 0.95 - 0.950 - - - - Mlig455_051572 {REF} {Length: 4894} {Pfam: AAA domain [PF13087.8, score=125.6]; AAA domain [PF13086.8, score=114.7]; RNB domain [PF00773.21, score=43.0]; Viral (Superfamily 1) RNA helicase [PF01443.20, score=20.8]} {Human: ENSG00000130589, HELZ2, helicase with zinc finger 2, [Score=197, Expect=1e-50]} {Mouse: ENSMUSG00000027580, Helz2, helicase with zinc finger 2, transcriptional coactivator, [Score=134, Expect=2e-31]} {Dmel: FBgn0030354, Upf1, [Score=87.8, Expect=3e-17]} {Celegans: WBGene00004880, smg-2, Regulator of nonsense transcripts 1, [Score=79.0, Expect=1e-14]} {Smed: dd_Smed_v6_7048_0_2, dd_Smed_v6_7048_0_2, [Score=288, Expect=7e-81]} {RNA1509_50503} {RNA1310_368.2} {RNA815_4822.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA