M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22358

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22358 6 0.13 Mlig455_004312

Neo: -

Age: -

 Mlig455_004312 {REF} {Length: 289} {NoTransDecoderORF} {RNA1509_47318} {RNA1310_10380.1} {RNA815_53787}

Cumulative graph for MligTC455_22358

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_22358

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22358 6 0.13 Mlig455_004312

Neo: -

Age: -

 1 - 1.000 - - - - Mlig455_004312 {REF} {Length: 289} {NoTransDecoderORF} {RNA1509_47318} {RNA1310_10380.1} {RNA815_53787}
2. MligTC455_19828 10 0.21 Mlig455_044131

Neo: Germline

Age: -

 CSNK1A1 0.997 - 0.997 - - - - Mlig455_044131 {REF} {Length: 2908} {Human: ENSG00000113712, CSNK1A1, casein kinase 1 alpha 1, [Score=59.7, Expect=9e-09]} {Mouse: ENSMUSG00000024576, Csnk1a1, casein kinase 1, alpha 1, [Score=59.7, Expect=6e-09]} {Dmel: FBgn0037325, CG12147, [Score=62.0, Expect=1e-09]} {Celegans: WBGene00002202, kin-19, Casein kinase I isoform alpha, [Score=68.2, Expect=5e-12]} {Smed: dd_Smed_v6_12103_0_1, dd_Smed_v6_12103_0_1, [Score=65.5, Expect=3e-11]} {RNA1509_32782} {RNA1310_8866.1} {RNA815_11402.1}
3. MligTC455_13313 15 0.32 Mlig455_044729

Neo: -

Age: -

 0.996 - 0.996 - - - - Mlig455_044729 {REF} {Length: 760} {NoTransDecoderORF} {RNA1310_80873} {RNA815_37906}
4. MligTC455_36698 41 0.85 Mlig455_020379, Mlig455_020438

Neo: -

Age: -

Region-enriched R4: 4.050/0.03458

 0.996 - 0.996 - - - -

Mlig455_020379 {REF} {Length: 1748} {Celegans: WBGene00007723, C25F9.2, [Score=77.8, Expect=7e-17]} {RNA1509_21495} {RNA1310_13315} {RNA815_8935}

Mlig455_020438 {REF} {Length: 2872} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=53.1]} {Celegans: WBGene00007723, C25F9.2, [Score=206, Expect=7e-57]} {RNA1509_21495} {RNA1310_13315} {RNA815_8935}
5. MligTC455_11896 3 0.07 Mlig455_068302

Neo: -

Age: -

 0.993 - 0.993 - - - - Mlig455_068302 {REF} {Length: 402} {RNA1310_64623}
6. MligTC455_07890 39 0.81 Mlig455_025968

Neo: -

Age: -

Regeneration-downregulated R4: -5.998

Regeneration-depleted R4: -5.998

 0.991 - 0.991 - - - - Mlig455_025968 {REF} {Length: 244} {NoTransDecoderORF} {RNA1509_47328} {RNA1310_29900} {RNA815_13457}
7. MligTC455_00007 21 0.44 Mlig455_011366

Neo: -

Age: -

Region-enriched R4: 4.653/0.03334

 0.988 - 0.988 - - - - Mlig455_011366 {REF} {Length: 385} {NoTransDecoderORF} {RNA1509_35901, RNA1509_55800} {RNA1310_1066, RNA1509_35901} {RNA1509_35901, RNA815_51202}
8. MligTC455_31437 3 0.07 Mlig455_070586

Neo: Germline

Age: Down-Up-Down

 0.987 - 0.987 - - - - Mlig455_070586 {REF} {Length: 1339} {RNA1310_32184} {RNA815_39414}
9. MligTC455_06246 19 0.39 Mlig455_062560

Neo: -

Age: -

 0.984 - 0.984 - - - - Mlig455_062560 {REF} {Length: 941} {NoTransDecoderORF} {RNA1310_117757} {RNA815_61496}
10. MligTC455_38628 6 0.12 Mlig455_066441

Neo: -

Age: -

 0.982 - 0.982 - - - - Mlig455_066441 {REF} {Length: 225} {TRANSSPLICED}
11. MligTC455_00826 1 0.03 Mlig455_057724

Neo: -

Age: -

 0.981 - 0.981 - - - - Mlig455_057724 {REF} {Length: 665} {NoTransDecoderORF} {RNA1509_6038} {RNA1310_96944} {RNA815_14376}
12. MligTC455_01403 5 0.1 Mlig455_045428

Neo: -

Age: -

 0.981 - 0.981 - - - - Mlig455_045428 {REF} {Length: 289} {NoTransDecoderORF} {RNA1310_41013.2} {RNA815_42157}
13. MligTC455_09638 6 0.12 Mlig455_010394

Neo: -

Age: -

 0.981 - 0.981 - - - - Mlig455_010394 {REF} {Length: 2052} {Pfam: Methyltransferase domain [PF13383.8, score=62.9]; Methyltransferase FkbM domain [PF05050.14, score=22.5]} {Celegans: WBGene00019450, K06H6.2, [RH, Score=53.5, Expect=4e-08]} {Smed: dd_Smed_v6_3811_0_1, dd_Smed_v6_3811_0_1, [Score=193, Expect=5e-60]} {RNA1509_23952} {RNA1310_5614} {RNA815_5111.2}
14. MligTC455_10885 8 0.17 Mlig455_069452

Neo: -

Age: -

 0.981 - 0.981 - - - - Mlig455_069452 {REF} {Length: 405} {NoTransDecoderORF}
15. MligTC455_11692 9 0.19 Mlig455_037965

Neo: Int S/G2/M

Age: -

 0.981 - 0.981 - - - - Mlig455_037965 {REF} {Length: 1421} {RNA1509_12762} {RNA1310_90485} {RNA815_44022}
16. MligTC455_12635 46 0.96 Mlig455_035482

Neo: -

Age: -

 0.981 - 0.981 - - - - Mlig455_035482 {REF} {Length: 1106} {NoTransDecoderORF} {RNA1509_12003} {RNA1310_15400}
17. MligTC455_14397 19 0.39 Mlig455_054949

Neo: -

Age: -

Regeneration-upregulated R2: 6.823

Regeneration-enriched R2: 6.823

 0.981 - 0.981 - - - - Mlig455_054949 {REF} {Length: 334} {NoTransDecoderORF} {RNA1509_4874} {RNA1310_21051.1} {RNA815_3659}
18. MligTC455_24105 8 0.18 Mlig455_005937

Neo: -

Age: -

 MARCH6 0.981 - 0.981 - - - - Mlig455_005937 {REF} {Length: 706} {Pfam: RING-variant domain [PF12906.9, score=44.3]} {Human: ENSG00000145495, MARCH6, membrane associated ring-CH-type finger 6, [Score=45.4, Expect=4e-06]} {Mouse: ENSMUSG00000039100, March6, membrane-associated ring finger (C3HC4) 6, [Score=45.4, Expect=2e-06]} {Celegans: WBGene00018847, marc-6, MARCH (Membrane-Associated Ring finger (C3HC4)) homolog, [Score=42.7, Expect=1e-05]} {RNA1509_7428} {RNA1310_46233} {RNA815_51275}
19. MligTC455_27480 25 0.52 Mlig455_000922, Mlig455_029917

Neo: Irradiation

Age: -

Region-enriched R4: 4.495/0.02400

 LRP2 0.981 - 0.981 - - - -

Mlig455_000922 {REF} {Length: 1748} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=190.0]} {Human: ENSG00000081479, LRP2, LDL receptor related protein 2, [Score=166, Expect=5e-43]; ENSG00000168702, LRP1B, LDL receptor related protein 1B, [Score=158, Expect=2e-40]} {Mouse: ENSMUSG00000027070, Lrp2, low density lipoprotein receptor-related protein 2, [Score=171, Expect=7e-45]} {Dmel: FBgn0261260, mgl, Megalin, [Score=151, Expect=3e-38]} {Celegans: WBGene00015083, egg-1, EGG sterile (Unfertilizable), [RH, Score=137, Expect=1e-34]} {Smed: dd_Smed_v6_9829_0_1, dd_Smed_v6_9829_0_1, [Score=95.1, Expect=2e-20]} {RNA1509_21286, RNA1509_37995} {RNA1310_9519.1, RNA1509_37995} {RNA1509_37995, RNA815_3328.1}

Mlig455_029917 {REF} {Length: 1960} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=191.6]} {Human: ENSG00000081479, LRP2, LDL receptor related protein 2, [Score=164, Expect=3e-42]; ENSG00000168702, LRP1B, LDL receptor related protein 1B, [Score=159, Expect=2e-40]} {Mouse: ENSMUSG00000027070, Lrp2, low density lipoprotein receptor-related protein 2, [Score=170, Expect=2e-44]} {Dmel: FBgn0261260, mgl, Megalin, [Score=152, Expect=2e-38]} {Celegans: WBGene00003071, lrp-1, Low-density lipoprotein receptor-related protein, [Score=144, Expect=6e-36]} {Smed: dd_Smed_v6_9829_0_1, dd_Smed_v6_9829_0_1, [Score=95.9, Expect=1e-20]} {RNA1509_21286} {RNA1310_9519.3} {RNA815_3328.1}
20. MligTC455_45161 29 0.6 Mlig455_027613

Neo: Irradiation

Age: -

 WSCD2 0.981 - 0.981 - - - - Mlig455_027613 {REF} {Length: 1427} {Pfam: WSC domain [PF01822.21, score=56.9]; PAN domain [PF00024.28, score=21.6]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=54.3, Expect=4e-08]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=56.6, Expect=4e-09]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=61.2, Expect=8e-11]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=52.8, Expect=4e-08]} {RNA1509_29094} {RNA1310_36326} {RNA815_27950.1}
21. MligTC455_09309 4 0.09 Mlig455_004380, Mlig455_037194

Neo: -

Age: -

 0.978 - 0.978 - - - -

Mlig455_004380 {REF} {Length: 1098} {tRNA: Ala(TGC),pseudo, score=24.3} {Pfam: zinc-binding in reverse transcriptase [PF13966.8, score=27.6]} {RNA1509_44544} {RNA1310_38172.1} {RNA815_15779}

Mlig455_037194 {REF} {Length: 533} {Pfam: zinc-binding in reverse transcriptase [PF13966.8, score=28.1]} {RNA1310_38172.1} {RNA815_15779}
22. MligTC455_18673 11 0.22 Mlig455_056921

Neo: -

Age: -

 0.978 - 0.978 - - - - Mlig455_056921 {REF} {Length: 412} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_55231} {RNA1310_82755} {RNA815_29683.2}
23. MligTC455_24600 30 0.63 Mlig455_053123

Neo: -

Age: -

 KCTD1 0.978 - 0.978 - - - - Mlig455_053123 {REF} {Length: 2286} {Pfam: DDE superfamily endonuclease [PF13359.8, score=23.5]; Phage integrase family [PF00589.24, score=21.3]} {Human: ENSG00000134504, KCTD1, potassium channel tetramerization domain containing 1, [Score=68.9, Expect=1e-11]} {Mouse: ENSMUSG00000036225, Kctd1, potassium channel tetramerisation domain containing 1, [Score=64.3, Expect=2e-10]} {RNA1509_24145} {RNA1310_11219.1} {RNA815_23788}
24. MligTC455_16139 81 1.68 Mlig455_039682, Mlig455_039738

Neo: Irradiation

Age: logFC(26M/2M)=0.361

 PRR9 0.976 - 0.976 - - - -

Mlig455_039682 {REF} {Length: 1246} {RNA1509_48733} {RNA1310_40004} {RNA815_39929}

Mlig455_039738 {REF} {Length: 1922} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=45.8, Expect=6e-06]} {RNA1509_48733} {RNA1310_40004} {RNA815_39929}
25. MligTC455_01939 5 0.11 Mlig455_014461

Neo: -

Age: Up-Down-Down

 0.975 - 0.975 - - - - Mlig455_014461 {REF} {Length: 3042} {RNA1310_63926} {RNA815_36221}
26. MligTC455_30703 34 0.71 Mlig455_042855

Neo: Germline

Age: -

 0.974 - 0.974 - - - - Mlig455_042855 {REF} {Length: 3021} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=119.4]} {RNA1509_6501} {RNA1310_3605.1} {RNA815_33122}
27. MligTC455_00200 3 0.07 Mlig455_001460

Neo: -

Age: -

 0.973 - 0.973 - - - - Mlig455_001460 {REF} {Length: 513} {RNA1509_5872} {RNA1310_60298.2} {RNA815_59763}
28. MligTC455_01150 7 0.15 Mlig455_001840

Neo: Germline

Age: -

 0.972 - 0.972 - - - - Mlig455_001840 {REF} {Length: 490} {NoTransDecoderORF}
29. MligTC455_13814 28 0.58 Mlig455_056136

Neo: Int S/G2/M

Age: -

Region-enriched R4: 5.042/0.00008

 0.971 - 0.971 - - - - Mlig455_056136 {REF} {Length: 1151} {RNA1310_29105} {RNA815_44614}
30. MligTC455_01682 5 0.1 Mlig455_027135

Neo: -

Age: -

 0.97 - 0.970 - - - - Mlig455_027135 {REF} {Length: 145} {NoTransDecoderORF} {RNA1509_51681}
31. MligTC455_02854 3 0.07 Mlig455_018027

Neo: -

Age: -

 0.969 - 0.969 - - - - Mlig455_018027 {REF} {Length: 1395} {RNA1310_19991}
32. MligTC455_50687 38 0.78 Mlig455_013239

Neo: Irradiation

Age: logFC(26M/2M)=-0.820

Region-enriched R2: 5.674/0.01441

 RTL1 0.968 - 0.968 - - - - Mlig455_013239 {REF} {Length: 5022} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=118.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=115.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=61.2]; Integrase zinc binding domain [PF17921.3, score=50.8]; Integrase core domain [PF00665.28, score=47.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=29.0]; Aspartyl protease [PF13650.8, score=27.9]; Integrase core domain [PF13683.8, score=23.1]; Retroviral aspartyl protease [PF00077.22, score=20.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.4, Expect=3e-20]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=63.5, Expect=2e-09]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=321, Expect=4e-92]} {RNA1509_16111} {RNA1310_1931.1, RNA1509_16111} {RNA1509_16111, RNA815_6622}
33. MligTC455_09796 8 0.16 Mlig455_002871

Neo: -

Age: Up-Down-Down

 0.967 - 0.967 - - - - Mlig455_002871 {REF} {Length: 3330} {Pfam: Sodium:solute symporter family [PF00474.19, score=46.9]} {Smed: dd_Smed_v6_35684_0_1, dd_Smed_v6_35684_0_1, [RH, Score=382, Expect=5e-127]} {RNA1509_52036} {RNA1310_27724} {RNA815_26006}
34. MligTC455_23823 50 1.05 Mlig455_059051

Neo: Irradiation

Age: Up-Down-Up

Region-enriched R4: 4.805/0.00658

 0.967 - 0.967 - - - - Mlig455_059051 {REF} {Length: 1598} {RNA1509_43263} {RNA1310_30719} {RNA815_22231}
35. MligTC455_53145 110 2.29 Mlig455_026430, Mlig455_026461, Mlig455_044753

Neo: Germline

Age: Up-Down-Down

Region-enriched R4: 3.561/0.00008

 SSUH2 0.967 - 0.967 - - - -

Mlig455_026430 {REF} {Length: 2367} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=198, Expect=5e-58]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=176, Expect=5e-50]} {RNA1509_34322} {RNA1310_16973.1} {RNA815_16004}

Mlig455_026461 {REF} {Length: 3481} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=202, Expect=1e-59]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=180, Expect=1e-51]} {RNA1509_34322} {RNA1310_16973.1, RNA1509_34322} {RNA1509_34322, RNA815_16004}

Mlig455_044753 {REF} {Length: 3186} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=204, Expect=2e-60]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=181, Expect=4e-52]} {RNA1509_34322} {RNA1310_16973.1} {RNA815_16004}
36. MligTC455_53700 11 0.22 Mlig455_009554

Neo: -

Age: -

 0.965 - 0.965 - - - - Mlig455_009554 {REF} {Length: 1011} {Pfam: Transposase protein [PF12017.10, score=18.1]} {RNA1509_10052} {RNA1310_26211.2} {RNA815_39426}
37. MligTC455_36361 38 0.78 Mlig455_031820, Mlig455_047672

Neo: -

Age: -

Region-enriched R4: 3.174/0.04287

 0.964 - 0.964 - - - -

Mlig455_031820 {REF} {Length: 2062} {RNA1509_20555} {RNA1310_88884} {RNA815_46995}

Mlig455_047672 {REF} {Length: 2452} {NoTransDecoderORF} {RNA1509_10844} {RNA1310_88884} {RNA815_46995}
38. MligTC455_26729 3 0.06 Mlig455_037349

Neo: -

Age: -

 0.963 - 0.963 - - - - Mlig455_037349 {REF} {Length: 551} {NoTransDecoderORF}
39. MligTC455_05074 18 0.37 Mlig455_045279

Neo: -

Age: -

 0.962 - 0.962 - - - - Mlig455_045279 {REF} {Length: 446} {RNA1509_26772} {RNA1310_71478.2} {RNA815_36281.1}
40. MligTC455_14727 11 0.23 Mlig455_062713

Neo: -

Age: -

 0.962 - 0.962 - - - - Mlig455_062713 {REF} {Length: 1696} {NoTransDecoderORF} {RNA1509_39955} {RNA1310_82169} {RNA815_46001}
41. MligTC455_17344 10 0.21 Mlig455_058885

Neo: Int S/G2/M

Age: -

 0.962 - 0.962 - - - - Mlig455_058885 {REF} {Length: 1824} {RNA1509_5648} {RNA1310_13862} {RNA815_10301}
42. MligTC455_01985 11 0.22 Mlig455_047156, Mlig455_047234

Neo: -

Age: -

 ZMYM1 0.961 - 0.961 - - - -

Mlig455_047156 {REF} {Length: 1126} {Pfam: hAT family C-terminal dimerisation region [PF05699.16, score=40.6]} {Smed: dd_Smed_v6_13305_1_1, dd_Smed_v6_13305_1_1, [Score=102, Expect=1e-25]} {RNA1509_10511} {RNA1310_43060} {RNA815_5454.2}

Mlig455_047234 {REF} {Length: 1126} {Pfam: hAT family C-terminal dimerisation region [PF05699.16, score=39.7]} {Human: ENSG00000197056, ZMYM1, zinc finger MYM-type containing 1, [Score=46.6, Expect=1e-05]} {Mouse: ENSMUSG00000043872, Zmym1, zinc finger, MYM domain containing 1, [Score=47.0, Expect=8e-06]} {Smed: dd_Smed_v6_13305_1_1, dd_Smed_v6_13305_1_1, [Score=103, Expect=6e-26]} {RNA1509_10511} {RNA1310_43060} {RNA815_5454.2}
43. MligTC455_13978 388 8.08 Mlig455_007531, Mlig455_024787, Mlig455_030583

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 6.585

Region-enriched R4: 2.995/0.00485

 0.961 - 0.961 - - - -

Mlig455_007531 {REF} {Length: 2595} {RNA1509_32577} {RNA1310_9161.1} {RNA815_24289}

Mlig455_024787 {REF} {Length: 3379} {RNA1509_32577} {RNA1310_9161.1} {RNA815_24289}

Mlig455_030583 {REF} {Length: 3481} {RNA1509_32577, RNA1509_55493, RNA1509_59638} {RNA1310_9161.1, RNA1509_32577, RNA1509_55493, RNA1509_59638} {RNA1509_32577, RNA1509_55493, RNA1509_59638, RNA815_24289}
44. MligTC455_14433 53 1.09 Mlig455_004533

Neo: Irradiation

Age: Up-Down-Down

 FAM78B 0.961 - 0.961 - - - - Mlig455_004533 {REF} {Length: 2147} {Human: ENSG00000188859, FAM78B, family with sequence similarity 78 member B, [Score=116, Expect=1e-29]} {Mouse: ENSMUSG00000060568, Fam78b, family with sequence similarity 78, member B, [Score=116, Expect=8e-30]} {Smed: dd_Smed_v6_50260_0_1, dd_Smed_v6_50260_0_1, [Score=79.3, Expect=6e-18]} {RNA1509_1086} {RNA1310_23657.1} {RNA815_9864.1}
45. MligTC455_51530 57 1.19 Mlig455_065987

Neo: Germline

Age: Up-Down-Down

Region-enriched R4: 3.368/0.00868

 0.961 - 0.961 - - - - Mlig455_065987 {REF} {Length: 2589} {RNA1509_13474, RNA1509_18144} {RNA1310_11588, RNA1509_13474, RNA1509_18144} {RNA1509_13474, RNA1509_18144, RNA815_6383}
46. MligTC455_04519 25 0.52 Mlig455_063942

Neo: -

Age: -

 0.96 - 0.960 - - - - Mlig455_063942 {REF} {Length: 479} {RNA1509_54738} {RNA1310_89291, RNA1509_54738} {RNA1509_54738, RNA815_46717}
47. MligTC455_49563 96 2.01 Mlig455_044595

Neo: Germline

Age: Up-Down-Down

 0.96 - 0.960 - - - - Mlig455_044595 {REF} {Length: 3287} {Pfam: Thrombospondin type 1 domain [PF00090.21, score=27.3]; Spondin-like TSP1 domain [PF19028.2, score=22.7]} {Smed: dd_Smed_v6_20221_0_1, dd_Smed_v6_20221_0_1, [Score=72.0, Expect=4e-13]} {RNA1509_33920, RNA1509_43518} {RNA1310_11444, RNA1509_33920, RNA1509_43518} {RNA1509_33920, RNA1509_43518, RNA815_5322}
48. MligTC455_03825 12 0.25 Mlig455_057358

Neo: -

Age: Up-Down-Up

 0.959 - 0.959 - - - - Mlig455_057358 {REF} {Length: 1276} {RNA1310_49208} {RNA815_40627}
49. MligTC455_10308 5 0.1 Mlig455_070414

Neo: -

Age: -

 PIF1 0.959 - 0.959 - - - - Mlig455_070414 {REF} {Length: 1151} {Pfam: PIF1-like helicase [PF05970.16, score=327.6]; AAA domain [PF13604.8, score=61.0]; P-loop Domain of unknown function (DUF2791) [PF10923.10, score=18.0]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=103, Expect=2e-22]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=100, Expect=9e-22]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=98.2, Expect=4e-21]} {Celegans: WBGene00021577, Y46B2A.2, [Score=234, Expect=8e-66]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=99.8, Expect=9e-22]} {RNA1509_21993} {RNA1310_51343}
50. MligTC455_26454 48 0.99 Mlig455_043007

Neo: Germline

Age: Up-Down-Down

 ABCA8 0.959 - 0.959 - - - - Mlig455_043007 {REF} {Length: 5423} {Pfam: ABC transporter [PF00005.29, score=116.3]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=50.4]; ABC-2 family transporter protein [PF12698.9, score=26.1]; AAA domain [PF13476.8, score=24.1]; RecF/RecN/SMC N terminal domain [PF02463.21, score=21.0]; P-loop containing region of AAA domain [PF13555.8, score=20.4]} {Human: ENSG00000141338, ABCA8, ATP binding cassette subfamily A member 8, [Score=206, Expect=7e-53]} {Mouse: ENSMUSG00000041828, Abca8a, ATP-binding cassette, sub-family A (ABC1), member 8a, [Score=196, Expect=7e-50]} {Dmel: FBgn0031170, CG1718, [Score=155, Expect=2e-37]} {Celegans: WBGene00000020, abt-2, ABC Transporter family, [Score=127, Expect=6e-29]} {Smed: dd_Smed_v6_30574_0_1, dd_Smed_v6_30574_0_1, [Score=149, Expect=3e-36]} {RNA1509_15846} {RNA1310_1051.1} {RNA815_2076}
51. MligTC455_32218 13 0.27 Mlig455_015343

Neo: -

Age: -

 0.958 - 0.958 - - - - Mlig455_015343 {REF} {Length: 2230} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=39.5]; DDE superfamily endonuclease [PF13358.8, score=19.3]} {Smed: dd_Smed_v6_31564_0_1, dd_Smed_v6_31564_0_1, [Score=71.2, Expect=3e-13]} {RNA1509_41917} {RNA1310_5589.1} {RNA815_12536.1}
52. MligTC455_39172 41 0.86 Mlig455_043927

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R4: 3.276/0.02206

 0.957 - 0.957 - - - - Mlig455_043927 {REF} {Length: 1153} {RNA1509_1029} {RNA1310_32039} {RNA815_16431}
53. MligTC455_24327 16 0.33 Mlig455_024425, Mlig455_024543

Neo: -

Age: -

 SETMAR 0.956 - 0.956 - - - -

Mlig455_024425 {REF} {Length: 1788} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=82.3]; DDE superfamily endonuclease [PF13358.8, score=27.6]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=150, Expect=1e-41]} {Smed: dd_Smed_v6_13618_0_23, dd_Smed_v6_13618_0_23, [RH, Score=79.0, Expect=1e-18]} {RNA1509_29601} {RNA1310_16439.1} {RNA815_14796}

Mlig455_024543 {REF} {Length: 2593} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=82.3]; DDE superfamily endonuclease [PF13358.8, score=25.7]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=151, Expect=5e-42]} {Smed: dd_Smed_v6_13618_0_23, dd_Smed_v6_13618_0_23, [RH, Score=77.8, Expect=3e-18]} {RNA1509_29601} {RNA1310_16439.1} {RNA815_14796}
54. MligTC455_26509 111 2.3 Mlig455_043045

Neo: Int S/G2/M

Age: Up-Down-Down

 ABCA5 0.956 - 0.956 - - - - Mlig455_043045 {REF} {Length: 4943} {Pfam: ABC transporter [PF00005.29, score=80.8]; ABC-2 family transporter protein [PF12698.9, score=25.1]; AAA domain [PF13476.8, score=24.6]; P-loop containing region of AAA domain [PF13555.8, score=20.5]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=20.0]} {Human: ENSG00000154265, ABCA5, ATP binding cassette subfamily A member 5, [Score=114, Expect=1e-24]} {Mouse: ENSMUSG00000041828, Abca8a, ATP-binding cassette, sub-family A (ABC1), member 8a, [Score=125, Expect=2e-28]} {Dmel: FBgn0083956, CG34120, [Score=93.6, Expect=1e-18]} {Celegans: WBGene00000020, abt-2, ABC Transporter family, [Score=103, Expect=8e-22]} {Smed: dd_Smed_v6_37604_0_1, dd_Smed_v6_37604_0_1, [Score=57.4, Expect=9e-09]} {RNA1509_15846} {RNA1310_1051.1} {RNA815_3241}
55. MligTC455_39763 11 0.24 Mlig455_052385

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.489

 0.956 - 0.956 - - - - Mlig455_052385 {REF} {Length: 2874} {RNA1509_4400} {RNA1310_11247} {RNA815_11511}
56. MligTC455_49905 16 0.33 Mlig455_012714

Neo: -

Age: -

 0.956 - 0.956 - - - - Mlig455_012714 {REF} {Length: 993} {RNA1310_52533} {RNA815_32753}
57. MligTC455_03542 16 0.34 Mlig455_028898

Neo: Irradiation

Age: Up-Down-Down

 0.955 - 0.955 - - - - Mlig455_028898 {REF} {Length: 1695} {RNA1509_23422} {RNA1310_24001} {RNA815_7385}
58. MligTC455_05660 5 0.1 Mlig455_013850

Neo: -

Age: -

 0.955 - 0.955 - - - - Mlig455_013850 {REF} {Length: 1593} {RNA1310_26225} {RNA815_41464}
59. MligTC455_07350 69 1.43 Mlig455_010387, Mlig455_028017

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-1.679

Region-enriched R4: 4.964/0.00341

 0.955 - 0.955 - - - -

Mlig455_010387 {REF} {Length: 2742} {RNA1310_57879} {RNA815_55513}

Mlig455_028017 {REF} {Length: 2442} {RNA1310_57879}
60. MligTC455_27059 27 0.56 Mlig455_001200

Neo: Germline

Age: Down-Up-Down

 0.954 - 0.954 - - - - Mlig455_001200 {REF} {Length: 3608} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=119.9]} {RNA1509_6501} {RNA1310_3605.1} {RNA815_26244}
61. MligTC455_35513 47 0.97 Mlig455_041036

Neo: Germline

Age: Up-Down-Down

Region-enriched R4: 6.304/0.00001

 0.953 - 0.953 - - - - Mlig455_041036 {REF} {Length: 1656} {RNA1509_8592} {RNA1310_43895.1, RNA1509_8592} {RNA1509_8592, RNA815_21669.1}
62. MligTC455_00685 3 0.07 Mlig455_058662

Neo: -

Age: -

 0.952 - 0.952 - - - - Mlig455_058662 {REF} {Length: 148} {NoTransDecoderORF} {RNA1509_51849} {RNA1310_35988}
63. MligTC455_48852 17 0.35 Mlig455_067801

Neo: Irradiation

Age: Up-Down-Down

 0.952 - 0.952 - - - - Mlig455_067801 {REF} {Length: 2358} {RNA1509_7858} {RNA1310_10864, RNA1509_7858} {RNA1509_7858, RNA815_3804}
64. MligTC455_05294 7 0.14 Mlig455_068623

Neo: -

Age: -

 0.951 - 0.951 - - - - Mlig455_068623 {REF} {Length: 209} {NoTransDecoderORF} {RNA1509_48191} {RNA1310_47921} {RNA815_39328}
65. MligTC455_05493 209 4.35 Mlig455_004277

Neo: Germline

Age: Up-Down-Up, logFC(26M/2M)=0.889

Region-specific R4: 4.847

Region-enriched R4: 4.218/0.00000

 0.951 - 0.951 - - - - Mlig455_004277 {REF} {Length: 1680} {RNA1509_36497} {RNA1310_33028.2, RNA1509_36497} {RNA1509_36497, RNA815_15751}
66. MligTC455_09076 32 0.66 Mlig455_011956

Neo: -

Age: -

 0.95 - 0.950 - - - - Mlig455_011956 {REF} {Length: 738} {RNA1509_39566} {RNA1310_47180} {RNA815_26826}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA