M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09333

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09333 26 0.53 Mlig455_068268

Neo: -

Age: -

 DMD Mlig455_068268 {REF} {Length: 877} {Human: ENSG00000198947, DMD, dystrophin, [Score=69.3, Expect=2e-13]} {Mouse: ENSMUSG00000045103, Dmd, dystrophin, muscular dystrophy, [Score=69.3, Expect=1e-13]} {Dmel: FBgn0260003, Dys, Dystrophin, [Score=74.7, Expect=2e-15]} {Smed: dd_Smed_v6_5325_0_3, dd_Smed_v6_5325_0_3, [Score=52.4, Expect=5e-08]} {RNA815_52262}

Cumulative graph for MligTC455_09333

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_09333

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_05836 41 0.86 Mlig455_062933

Neo: -

Age: -

 GLRA3 1 - - - 1.000 - - Mlig455_062933 {REF} {Length: 2405} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=115.0]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=75.9]} {Human: ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=186, Expect=5e-53]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=179, Expect=2e-50]} {Mouse: ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=182, Expect=2e-51]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=179, Expect=1e-50]; ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=177, Expect=6e-50]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=177, Expect=5e-50]; ENSMUSG00000029212, Gabrb1, gamma-aminobutyric acid (GABA) A receptor, subunit beta 1, [Score=173, Expect=4e-48]} {Dmel: FBgn0024963, GluClalpha, [Score=178, Expect=1e-50]} {Celegans: WBGene00001591, glc-1, Glutamate-gated chloride channel alpha, [Score=193, Expect=5e-56]} {Smed: dd_Smed_v6_11342_0_1, dd_Smed_v6_11342_0_1, [Score=197, Expect=7e-58]} {RNA1310_58187}
2. MligTC455_06647 17 0.35 Mlig455_009519

Neo: -

Age: -

 1 - - - 1.000 - - Mlig455_009519 {REF} {Length: 591} {NoTransDecoderORF} {RNA1509_15304} {RNA1310_149116} {RNA815_5012.1}
3. MligTC455_09333 26 0.53 Mlig455_068268

Neo: -

Age: -

 DMD 1 - - - 1.000 - - Mlig455_068268 {REF} {Length: 877} {Human: ENSG00000198947, DMD, dystrophin, [Score=69.3, Expect=2e-13]} {Mouse: ENSMUSG00000045103, Dmd, dystrophin, muscular dystrophy, [Score=69.3, Expect=1e-13]} {Dmel: FBgn0260003, Dys, Dystrophin, [Score=74.7, Expect=2e-15]} {Smed: dd_Smed_v6_5325_0_3, dd_Smed_v6_5325_0_3, [Score=52.4, Expect=5e-08]} {RNA815_52262}
4. MligTC455_19966 28 0.59 Mlig455_007419

Neo: -

Age: Up-Down-Down

 1 - - - 1.000 - - Mlig455_007419 {REF} {Length: 1601} {NoTransDecoderORF} {RNA1509_51785} {RNA1310_77392} {RNA815_14770.1}
5. MligTC455_34016 46 0.96 Mlig455_006455

Neo: -

Age: logFC(26M/2M)=0.497

 MX2 1 - - - 1.000 - - Mlig455_006455 {REF} {Length: 3014} {Pfam: Dynamin family [PF00350.25, score=111.5]; Dynamin central region [PF01031.22, score=36.1]; 50S ribosome-binding GTPase [PF01926.25, score=24.0]} {Human: ENSG00000183486, MX2, MX dynamin like GTPase 2, [Score=150, Expect=6e-38]} {Mouse: ENSMUSG00000023341, Mx2, MX dynamin-like GTPase 2, [Score=145, Expect=1e-36]; ENSMUSG00000000386, Mx1, MX dynamin-like GTPase 1, [Score=141, Expect=1e-37]} {Dmel: FBgn0003392, shi, shibire, [Score=110, Expect=6e-25]} {Celegans: WBGene00001130, dyn-1, Dynamin, [Score=102, Expect=1e-22]} {Smed: dd_Smed_v6_2583_0_1, dd_Smed_v6_2583_0_1, [Score=107, Expect=3e-24]} {RNA1310_33314} {RNA815_28377}
6. MligTC455_38160 5 0.1 Mlig455_023435

Neo: -

Age: -

 PKD2L1 1 - - - 1.000 - - Mlig455_023435 {REF} {Length: 4742} {Pfam: Polycystin cation channel [PF08016.14, score=168.5]; Ion transport protein [PF00520.33, score=29.2]} {Human: ENSG00000107593, PKD2L1, polycystin 2 like 1, transient receptor potential cation channel, [Score=114, Expect=9e-26]} {Mouse: ENSMUSG00000037578, Pkd2l1, polycystic kidney disease 2-like 1, [Score=120, Expect=5e-28]} {Dmel: FBgn0040333, brv3, brivido-3, [Score=67.8, Expect=2e-11]} {Celegans: WBGene00003058, lov-1, Location of vulva defective 1, [Score=114, Expect=6e-26]} {Smed: dd_Smed_v6_17348_0_1, dd_Smed_v6_17348_0_1, [Score=136, Expect=2e-33]} {RNA1509_36495} {RNA1310_14058} {RNA815_29106}
7. MligTC455_07397 240 5.01 Mlig455_001364, Mlig455_001378

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 7.653

Region-enriched R4: 4.505/0.00135

 0.999 - - - 0.999 - -

Mlig455_001364 {REF} {Length: 1876} {Pfam: RING-variant domain [PF12906.9, score=45.2]; Ring finger domain [PF13639.8, score=20.4]} {Dmel: FBgn0034546, CG13442, [Score=47.0, Expect=9e-06]} {Celegans: WBGene00018847, marc-6, MARCH (Membrane-Associated Ring finger (C3HC4)) homolog, [Score=52.8, Expect=1e-07]} {RNA1509_59641} {RNA1310_19590, RNA1509_59641} {RNA1509_59641, RNA815_17517}

Mlig455_001378 {REF} {Length: 2104} {Pfam: RING-variant domain [PF12906.9, score=45.2]; Ring finger domain [PF13639.8, score=20.4]} {Dmel: FBgn0034546, CG13442, [Score=47.0, Expect=8e-06]} {Celegans: WBGene00018847, marc-6, MARCH (Membrane-Associated Ring finger (C3HC4)) homolog, [Score=52.8, Expect=1e-07]} {RNA1509_59641} {RNA1310_19590} {RNA815_17517}
8. MligTC455_10067 15 0.31 Mlig455_049299, Mlig455_050636

Neo: -

Age: -

Region-enriched R4: 7.033/0.01042

 0.999 - - - 0.999 - -

Mlig455_049299 {REF} {Length: 374} {NoTransDecoderORF} {RNA1310_115820}

Mlig455_050636 {REF} {Length: 548} {NoTransDecoderORF} {RNA1310_115820}
9. MligTC455_13230 79 1.66 Mlig455_068366

Neo: Germline

Age: -

 0.996 - - - 0.996 - - Mlig455_068366 {REF} {Length: 698} {NoTransDecoderORF} {RNA1509_34277} {RNA1310_60780.2} {RNA815_64596}
10. MligTC455_19146 66 1.38 Mlig455_056018

Neo: Neoblast

Age: -

 TOMM22 0.996 - - - 0.996 - - Mlig455_056018 {REF} {Length: 1394} {TRANSSPLICED} {Pfam: Mitochondrial import receptor subunit Tom22 [PF04281.15, score=45.0]} {Human: ENSG00000100216, TOMM22, translocase of outer mitochondrial membrane 22, [RH, Score=50.4, Expect=4e-08]} {Mouse: ENSMUSG00000022427, Tomm22, translocase of outer mitochondrial membrane 22, [RH, Score=47.8, Expect=3e-07]} {Dmel: FBgn0035473, mge, maggie, [Score=70.1, Expect=5e-16]} {Celegans: WBGene00021133, tomm-22, Mitochondrial import receptor subunit TOM22 homolog, [RH, Score=76.6, Expect=7e-19]} {RNA1509_7031} {RNA1310_43451} {RNA815_36165}
11. MligTC455_42267 52 1.09 Mlig455_026054, Mlig455_037298

Neo: Germline

Age: Up-Down-Down

 GRIA3 0.983 - - - 0.983 - -

Mlig455_026054 {REF} {Length: 3987} {Pfam: Ligand-gated ion channel [PF00060.28, score=120.1]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=105.9]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=65.9]; Receptor family ligand binding region [PF01094.30, score=44.9]} {Human: ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=418, Expect=3e-131]; ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=417, Expect=4e-131]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=409, Expect=5e-128]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=402, Expect=2e-125]} {Mouse: ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=418, Expect=1e-131]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=418, Expect=2e-131]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=412, Expect=5e-129]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=401, Expect=4e-125]} {Dmel: FBgn0004619, GluRIA, Glutamate receptor IA, [Score=376, Expect=6e-115]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=346, Expect=3e-104]} {Smed: dd_Smed_v6_19602_0_1, dd_Smed_v6_19602_0_1, [Score=456, Expect=4e-146]} {RNA1310_47823} {RNA815_22886.2}

Mlig455_037298 {REF} {Length: 2220} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=89.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=59.9]} {Human: ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=114, Expect=2e-27]; ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=112, Expect=7e-27]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=111, Expect=1e-26]} {Mouse: ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=114, Expect=2e-27]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=112, Expect=4e-27]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=111, Expect=9e-27]} {Dmel: FBgn0004619, GluRIA, Glutamate receptor IA, [Score=114, Expect=7e-28]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=103, Expect=3e-24]} {Smed: dd_Smed_v6_19602_0_1, dd_Smed_v6_19602_0_1, [Score=123, Expect=3e-31]} {RNA1310_47823} {RNA815_22886.2}
12. MligTC455_37410 77 1.59 Mlig455_044543

Neo: Irradiation

Age: -

Region-specific R4: 5.465

Region-enriched R4: 2.505/0.04575

 0.98 - - - 0.980 - - Mlig455_044543 {REF} {Length: 3070} {RNA1509_51360} {RNA1310_2237.1} {RNA815_726.1}
13. MligTC455_20286 108 2.26 Mlig455_030205, Mlig455_047002, Mlig455_067144

Neo: Int S/G2/M

Age: Down-Down-Down, logFC(26M/2M)=-1.418

Region-enriched R4: 4.785/0.00002

 0.975 - - - 0.975 - -

Mlig455_030205 {REF} {Length: 4304} {RNA1509_33227} {RNA1310_15319} {RNA815_20927}

Mlig455_047002 {REF} {Length: 579} {RNA1310_15319} {RNA815_20927}

Mlig455_067144 {REF} {Length: 572} {RNA1509_33227} {RNA1310_9578.1} {RNA815_50129}
14. MligTC455_38599 13 0.27 Mlig455_031267

Neo: -

Age: -

 0.972 - - - 0.972 - - Mlig455_031267 {REF} {Length: 3570} {RNA1509_46642} {RNA1310_7864} {RNA815_30316}
15. MligTC455_42831 85 1.77 Mlig455_039919, Mlig455_041211, Mlig455_041225

Neo: -

Age: -

 BCL11A 0.97 - - - 0.970 - -

Mlig455_039919 {REF} {Length: 2448} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=48.7]; C2H2-type zinc finger [PF13894.8, score=30.4]; Zinc-finger double domain [PF13465.8, score=28.8]; C2H2-type zinc-finger domain [PF13909.8, score=19.3]} {Human: ENSG00000119866, BCL11A, B cell CLL/lymphoma 11A, [Score=152, Expect=6e-39]; ENSG00000127152, BCL11B, B cell CLL/lymphoma 11B, [Score=151, Expect=6e-39]} {Mouse: ENSMUSG00000000861, Bcl11a, B cell CLL/lymphoma 11A (zinc finger protein), [Score=152, Expect=4e-39]; ENSMUSG00000048251, Bcl11b, B cell leukemia/lymphoma 11B, [Score=151, Expect=4e-39]} {Dmel: FBgn0029939, CG9650, [Score=153, Expect=1e-39]} {Celegans: WBGene00017430, bcl-11, Mammalian BCL (B cell lymphoma) gene homologs, [RH, Score=131, Expect=1e-32]} {Smed: dd_Smed_v6_13341_0_1, dd_Smed_v6_13341_0_1, [Score=159, Expect=8e-43]} {RNA1509_16620} {RNA1310_48848} {RNA815_19660}

Mlig455_041211 {REF} {Length: 2991} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=48.7]; C2H2-type zinc finger [PF13894.8, score=30.4]; Zinc-finger double domain [PF13465.8, score=28.8]; C2H2-type zinc-finger domain [PF13909.8, score=19.3]} {Human: ENSG00000119866, BCL11A, B cell CLL/lymphoma 11A, [Score=152, Expect=6e-39]; ENSG00000127152, BCL11B, B cell CLL/lymphoma 11B, [Score=151, Expect=6e-39]} {Mouse: ENSMUSG00000000861, Bcl11a, B cell CLL/lymphoma 11A (zinc finger protein), [Score=152, Expect=4e-39]; ENSMUSG00000048251, Bcl11b, B cell leukemia/lymphoma 11B, [Score=151, Expect=4e-39]} {Dmel: FBgn0029939, CG9650, [Score=153, Expect=1e-39]} {Celegans: WBGene00017430, bcl-11, Mammalian BCL (B cell lymphoma) gene homologs, [RH, Score=131, Expect=1e-32]} {Smed: dd_Smed_v6_13341_0_1, dd_Smed_v6_13341_0_1, [Score=159, Expect=8e-43]} {RNA1509_16620} {RNA1310_48848} {RNA815_19660}

Mlig455_041225 {REF} {Length: 3047} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=48.7]; C2H2-type zinc finger [PF13894.8, score=30.4]; Zinc-finger double domain [PF13465.8, score=28.8]; C2H2-type zinc-finger domain [PF13909.8, score=19.3]} {Human: ENSG00000119866, BCL11A, B cell CLL/lymphoma 11A, [Score=152, Expect=6e-39]; ENSG00000127152, BCL11B, B cell CLL/lymphoma 11B, [Score=151, Expect=6e-39]} {Mouse: ENSMUSG00000000861, Bcl11a, B cell CLL/lymphoma 11A (zinc finger protein), [Score=152, Expect=4e-39]; ENSMUSG00000048251, Bcl11b, B cell leukemia/lymphoma 11B, [Score=151, Expect=4e-39]} {Dmel: FBgn0029939, CG9650, [Score=153, Expect=1e-39]} {Celegans: WBGene00017430, bcl-11, Mammalian BCL (B cell lymphoma) gene homologs, [RH, Score=131, Expect=1e-32]} {Smed: dd_Smed_v6_13341_0_1, dd_Smed_v6_13341_0_1, [Score=159, Expect=8e-43]} {RNA1509_16620} {RNA1310_48848} {RNA815_19660}
16. MligTC455_21361 11 0.22 Mlig455_055171

Neo: -

Age: -

 0.965 - - - 0.965 - - Mlig455_055171 {REF} {Length: 2189} {RNA1509_24654} {RNA1310_37556} {RNA815_23057}
17. MligTC455_35236 16 0.33 Mlig455_044806

Neo: -

Age: -

 0.965 - - - 0.965 - - Mlig455_044806 {REF} {Length: 2110} {RNA1509_44285} {RNA1310_19570} {RNA815_8983}
18. MligTC455_14481 238 4.96 Mlig455_033409, Mlig455_033457

Neo: Germline

Age: -

 0.962 - - - 0.962 - -

Mlig455_033409 {REF} {Length: 696} {RNA1509_52538} {RNA1310_59981.1, RNA1509_52538} {RNA1509_52538, RNA815_37277}

Mlig455_033457 {REF} {Length: 721} {RNA1509_52538} {RNA1310_59981.1} {RNA815_37277}
19. MligTC455_19182 123 2.57 Mlig455_068869

Neo: Germline

Age: -

Region-specific R4: 7.030

Region-enriched R4: 4.890/0.00051

 0.955 - - - 0.955 - - Mlig455_068869 {REF} {Length: 732} {RNA1509_37182, RNA1509_56611} {RNA1310_53233, RNA1509_37182, RNA1509_56611} {RNA1509_37182, RNA1509_56611, RNA815_30290}
20. MligTC455_25709 23 0.47 Mlig455_034674, Mlig455_034724

Neo: -

Age: -

 CSTB 0.951 - - - 0.951 - -

Mlig455_034674 {REF} {Length: 1369} {TRANSSPLICED} {Pfam: Cystatin domain [PF00031.23, score=27.9]} {Human: ENSG00000160213, CSTB, cystatin B, [Score=77.4, Expect=1e-19]} {Mouse: ENSMUSG00000005054, Cstb, cystatin B, [Score=69.7, Expect=1e-16]} {Smed: dd_Smed_v6_423_0_1, dd_Smed_v6_423_0_1, [Score=83.2, Expect=7e-22]} {RNA1509_48375} {RNA1310_25872} {RNA815_28693}

Mlig455_034724 {REF} {Length: 533} {Pfam: Cystatin domain [PF00031.23, score=26.1]} {Human: ENSG00000160213, CSTB, cystatin B, [Score=71.6, Expect=2e-17]} {Mouse: ENSMUSG00000005054, Cstb, cystatin B, [Score=66.2, Expect=1e-15]} {Smed: dd_Smed_v6_423_0_1, dd_Smed_v6_423_0_1, [Score=68.6, Expect=2e-16]} {RNA1509_48375} {RNA1310_25872} {RNA815_14000}
21. MligTC455_32913 38 0.79 Mlig455_063646

Neo: -

Age: Down-Up-Down

 0.951 - - - 0.951 - - Mlig455_063646 {REF} {Length: 2461} {RNA1509_54756} {RNA1310_15352} {RNA815_19591}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA