M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25709

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25709 23 0.47 Mlig455_034674, Mlig455_034724

Neo: -

Age: -

 CSTB

Mlig455_034674 {REF} {Length: 1369} {TRANSSPLICED} {Pfam: Cystatin domain [PF00031.23, score=27.9]} {Human: ENSG00000160213, CSTB, cystatin B, [Score=77.4, Expect=1e-19]} {Mouse: ENSMUSG00000005054, Cstb, cystatin B, [Score=69.7, Expect=1e-16]} {Smed: dd_Smed_v6_423_0_1, dd_Smed_v6_423_0_1, [Score=83.2, Expect=7e-22]} {RNA1509_48375} {RNA1310_25872} {RNA815_28693}

Mlig455_034724 {REF} {Length: 533} {Pfam: Cystatin domain [PF00031.23, score=26.1]} {Human: ENSG00000160213, CSTB, cystatin B, [Score=71.6, Expect=2e-17]} {Mouse: ENSMUSG00000005054, Cstb, cystatin B, [Score=66.2, Expect=1e-15]} {Smed: dd_Smed_v6_423_0_1, dd_Smed_v6_423_0_1, [Score=68.6, Expect=2e-16]} {RNA1509_48375} {RNA1310_25872} {RNA815_14000}

Cumulative graph for MligTC455_25709

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.611 0.721 1.00000 1.00000
RegionR2 -0.689 0.721 0.99772 1.00000
RegionR3 -1.191 0.721 0.99222 1.00000
RegionR4 3.182 0.721 0.15772 0.41318
RegionR5 1.72 0.721 0.28251 0.61158
RegionR6 -3.214 0.721 1.00000 1.00000
RegionR7 1.057 0.721 0.49787 1.00000
RegionR8 1.746 0.721 0.77973 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.054 0.721 0.99981 1.00000
RegenerationR2 -3.13 0.721 0.29490 0.73723
RegenerationR3 -3.674 0.721 0.16910 0.60335
RegenerationR4 -2.899 0.721 0.23883 0.68806
RegenerationR5 -4.612 0.721 0.06230 0.39617
RegenerationR6 -1.428 0.721 1.00000 1.00000
RegenerationBL -3.646 0.721 1.00000 1.00000
RegenerationTP -5.51 0.721 0.13987 0.55838


Genes with expression patterns similar to MligTC455_25709

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25709 23 0.47 Mlig455_034674, Mlig455_034724

Neo: -

Age: -

 CSTB 1 - - - 1.000 - -

Mlig455_034674 {REF} {Length: 1369} {TRANSSPLICED} {Pfam: Cystatin domain [PF00031.23, score=27.9]} {Human: ENSG00000160213, CSTB, cystatin B, [Score=77.4, Expect=1e-19]} {Mouse: ENSMUSG00000005054, Cstb, cystatin B, [Score=69.7, Expect=1e-16]} {Smed: dd_Smed_v6_423_0_1, dd_Smed_v6_423_0_1, [Score=83.2, Expect=7e-22]} {RNA1509_48375} {RNA1310_25872} {RNA815_28693}

Mlig455_034724 {REF} {Length: 533} {Pfam: Cystatin domain [PF00031.23, score=26.1]} {Human: ENSG00000160213, CSTB, cystatin B, [Score=71.6, Expect=2e-17]} {Mouse: ENSMUSG00000005054, Cstb, cystatin B, [Score=66.2, Expect=1e-15]} {Smed: dd_Smed_v6_423_0_1, dd_Smed_v6_423_0_1, [Score=68.6, Expect=2e-16]} {RNA1509_48375} {RNA1310_25872} {RNA815_14000}
2. MligTC455_32913 38 0.79 Mlig455_063646

Neo: -

Age: Down-Up-Down

 1 - - - 1.000 - - Mlig455_063646 {REF} {Length: 2461} {RNA1509_54756} {RNA1310_15352} {RNA815_19591}
3. MligTC455_37592 21 0.45 Mlig455_024823, Mlig455_024904, Mlig455_025343

Neo: -

Age: -

 0.992 - - - 0.992 - -

Mlig455_024823 {REF} {Length: 89} {NoTransDecoderORF}

Mlig455_024904 {REF} {Length: 89} {NoTransDecoderORF}

Mlig455_025343 {REF} {Length: 1768} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_26676} {RNA815_51492}
4. MligTC455_20286 108 2.26 Mlig455_030205, Mlig455_047002, Mlig455_067144

Neo: Int S/G2/M

Age: Down-Down-Down, logFC(26M/2M)=-1.418

Region-enriched R4: 4.785/0.00002

 0.971 - - - 0.971 - -

Mlig455_030205 {REF} {Length: 4304} {RNA1509_33227} {RNA1310_15319} {RNA815_20927}

Mlig455_047002 {REF} {Length: 579} {RNA1310_15319} {RNA815_20927}

Mlig455_067144 {REF} {Length: 572} {RNA1509_33227} {RNA1310_9578.1} {RNA815_50129}
5. MligTC455_10067 15 0.31 Mlig455_049299, Mlig455_050636

Neo: -

Age: -

Region-enriched R4: 7.033/0.01042

 0.964 - - - 0.964 - -

Mlig455_049299 {REF} {Length: 374} {NoTransDecoderORF} {RNA1310_115820}

Mlig455_050636 {REF} {Length: 548} {NoTransDecoderORF} {RNA1310_115820}
6. MligTC455_42831 85 1.77 Mlig455_039919, Mlig455_041211, Mlig455_041225

Neo: -

Age: -

 BCL11A 0.958 - - - 0.958 - -

Mlig455_039919 {REF} {Length: 2448} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=48.7]; C2H2-type zinc finger [PF13894.8, score=30.4]; Zinc-finger double domain [PF13465.8, score=28.8]; C2H2-type zinc-finger domain [PF13909.8, score=19.3]} {Human: ENSG00000119866, BCL11A, B cell CLL/lymphoma 11A, [Score=152, Expect=6e-39]; ENSG00000127152, BCL11B, B cell CLL/lymphoma 11B, [Score=151, Expect=6e-39]} {Mouse: ENSMUSG00000000861, Bcl11a, B cell CLL/lymphoma 11A (zinc finger protein), [Score=152, Expect=4e-39]; ENSMUSG00000048251, Bcl11b, B cell leukemia/lymphoma 11B, [Score=151, Expect=4e-39]} {Dmel: FBgn0029939, CG9650, [Score=153, Expect=1e-39]} {Celegans: WBGene00017430, bcl-11, Mammalian BCL (B cell lymphoma) gene homologs, [RH, Score=131, Expect=1e-32]} {Smed: dd_Smed_v6_13341_0_1, dd_Smed_v6_13341_0_1, [Score=159, Expect=8e-43]} {RNA1509_16620} {RNA1310_48848} {RNA815_19660}

Mlig455_041211 {REF} {Length: 2991} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=48.7]; C2H2-type zinc finger [PF13894.8, score=30.4]; Zinc-finger double domain [PF13465.8, score=28.8]; C2H2-type zinc-finger domain [PF13909.8, score=19.3]} {Human: ENSG00000119866, BCL11A, B cell CLL/lymphoma 11A, [Score=152, Expect=6e-39]; ENSG00000127152, BCL11B, B cell CLL/lymphoma 11B, [Score=151, Expect=6e-39]} {Mouse: ENSMUSG00000000861, Bcl11a, B cell CLL/lymphoma 11A (zinc finger protein), [Score=152, Expect=4e-39]; ENSMUSG00000048251, Bcl11b, B cell leukemia/lymphoma 11B, [Score=151, Expect=4e-39]} {Dmel: FBgn0029939, CG9650, [Score=153, Expect=1e-39]} {Celegans: WBGene00017430, bcl-11, Mammalian BCL (B cell lymphoma) gene homologs, [RH, Score=131, Expect=1e-32]} {Smed: dd_Smed_v6_13341_0_1, dd_Smed_v6_13341_0_1, [Score=159, Expect=8e-43]} {RNA1509_16620} {RNA1310_48848} {RNA815_19660}

Mlig455_041225 {REF} {Length: 3047} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=48.7]; C2H2-type zinc finger [PF13894.8, score=30.4]; Zinc-finger double domain [PF13465.8, score=28.8]; C2H2-type zinc-finger domain [PF13909.8, score=19.3]} {Human: ENSG00000119866, BCL11A, B cell CLL/lymphoma 11A, [Score=152, Expect=6e-39]; ENSG00000127152, BCL11B, B cell CLL/lymphoma 11B, [Score=151, Expect=6e-39]} {Mouse: ENSMUSG00000000861, Bcl11a, B cell CLL/lymphoma 11A (zinc finger protein), [Score=152, Expect=4e-39]; ENSMUSG00000048251, Bcl11b, B cell leukemia/lymphoma 11B, [Score=151, Expect=4e-39]} {Dmel: FBgn0029939, CG9650, [Score=153, Expect=1e-39]} {Celegans: WBGene00017430, bcl-11, Mammalian BCL (B cell lymphoma) gene homologs, [RH, Score=131, Expect=1e-32]} {Smed: dd_Smed_v6_13341_0_1, dd_Smed_v6_13341_0_1, [Score=159, Expect=8e-43]} {RNA1509_16620} {RNA1310_48848} {RNA815_19660}
7. MligTC455_06647 17 0.35 Mlig455_009519

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_009519 {REF} {Length: 591} {NoTransDecoderORF} {RNA1509_15304} {RNA1310_149116} {RNA815_5012.1}
8. MligTC455_09333 26 0.53 Mlig455_068268

Neo: -

Age: -

 DMD 0.951 - - - 0.951 - - Mlig455_068268 {REF} {Length: 877} {Human: ENSG00000198947, DMD, dystrophin, [Score=69.3, Expect=2e-13]} {Mouse: ENSMUSG00000045103, Dmd, dystrophin, muscular dystrophy, [Score=69.3, Expect=1e-13]} {Dmel: FBgn0260003, Dys, Dystrophin, [Score=74.7, Expect=2e-15]} {Smed: dd_Smed_v6_5325_0_3, dd_Smed_v6_5325_0_3, [Score=52.4, Expect=5e-08]} {RNA815_52262}
9. MligTC455_19966 28 0.59 Mlig455_007419

Neo: -

Age: Up-Down-Down

 0.951 - - - 0.951 - - Mlig455_007419 {REF} {Length: 1601} {NoTransDecoderORF} {RNA1509_51785} {RNA1310_77392} {RNA815_14770.1}
10. MligTC455_34016 46 0.96 Mlig455_006455

Neo: -

Age: logFC(26M/2M)=0.497

 MX2 0.951 - - - 0.951 - - Mlig455_006455 {REF} {Length: 3014} {Pfam: Dynamin family [PF00350.25, score=111.5]; Dynamin central region [PF01031.22, score=36.1]; 50S ribosome-binding GTPase [PF01926.25, score=24.0]} {Human: ENSG00000183486, MX2, MX dynamin like GTPase 2, [Score=150, Expect=6e-38]} {Mouse: ENSMUSG00000023341, Mx2, MX dynamin-like GTPase 2, [Score=145, Expect=1e-36]; ENSMUSG00000000386, Mx1, MX dynamin-like GTPase 1, [Score=141, Expect=1e-37]} {Dmel: FBgn0003392, shi, shibire, [Score=110, Expect=6e-25]} {Celegans: WBGene00001130, dyn-1, Dynamin, [Score=102, Expect=1e-22]} {Smed: dd_Smed_v6_2583_0_1, dd_Smed_v6_2583_0_1, [Score=107, Expect=3e-24]} {RNA1310_33314} {RNA815_28377}
11. MligTC455_38160 5 0.1 Mlig455_023435

Neo: -

Age: -

 PKD2L1 0.951 - - - 0.951 - - Mlig455_023435 {REF} {Length: 4742} {Pfam: Polycystin cation channel [PF08016.14, score=168.5]; Ion transport protein [PF00520.33, score=29.2]} {Human: ENSG00000107593, PKD2L1, polycystin 2 like 1, transient receptor potential cation channel, [Score=114, Expect=9e-26]} {Mouse: ENSMUSG00000037578, Pkd2l1, polycystic kidney disease 2-like 1, [Score=120, Expect=5e-28]} {Dmel: FBgn0040333, brv3, brivido-3, [Score=67.8, Expect=2e-11]} {Celegans: WBGene00003058, lov-1, Location of vulva defective 1, [Score=114, Expect=6e-26]} {Smed: dd_Smed_v6_17348_0_1, dd_Smed_v6_17348_0_1, [Score=136, Expect=2e-33]} {RNA1509_36495} {RNA1310_14058} {RNA815_29106}
12. MligTC455_05836 41 0.86 Mlig455_062933

Neo: -

Age: -

 GLRA3 0.95 - - - 0.950 - - Mlig455_062933 {REF} {Length: 2405} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=115.0]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=75.9]} {Human: ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=186, Expect=5e-53]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=179, Expect=2e-50]} {Mouse: ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=182, Expect=2e-51]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=179, Expect=1e-50]; ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=177, Expect=6e-50]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=177, Expect=5e-50]; ENSMUSG00000029212, Gabrb1, gamma-aminobutyric acid (GABA) A receptor, subunit beta 1, [Score=173, Expect=4e-48]} {Dmel: FBgn0024963, GluClalpha, [Score=178, Expect=1e-50]} {Celegans: WBGene00001591, glc-1, Glutamate-gated chloride channel alpha, [Score=193, Expect=5e-56]} {Smed: dd_Smed_v6_11342_0_1, dd_Smed_v6_11342_0_1, [Score=197, Expect=7e-58]} {RNA1310_58187}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA