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Results for MligTC455_10479

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_10479 22 0.47 Mlig455_043933

Neo: -

Age: Up-Down-Down

 GRIK3 Mlig455_043933 {REF} {Length: 4305} {Pfam: Ligand-gated ion channel [PF00060.28, score=180.3]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=98.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=66.8]; Receptor family ligand binding region [PF01094.30, score=65.9]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=574, Expect=0.0]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=560, Expect=0.0]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=552, Expect=0.0]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=575, Expect=0.0]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=556, Expect=0.0]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=550, Expect=1e-180]} {Dmel: FBgn0038837, CG3822, [Score=586, Expect=0.0]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=422, Expect=9e-133]} {Smed: dd_Smed_v6_8816_0_1, dd_Smed_v6_8816_0_1, [Score=659, Expect=0.0]} {RNA1509_46749} {RNA1310_29846} {RNA815_14316}

Cumulative graph for MligTC455_10479

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.382 0.974 1.00000 1.00000
RegionR2 4.191 0.974 0.34075 0.73295
RegionR3 1.746 0.974 0.59994 1.00000
RegionR4 -2.043 0.974 0.90092 1.00000
RegionR5 -0.57 0.974 0.94277 1.00000
RegionR6 2.06 0.974 0.60590 1.00000
RegionR7 -1.485 0.974 1.00000 1.00000
RegionR8 -1.517 0.974 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.875 0.974 0.99986 1.00000
RegenerationR2 1.219 0.974 0.37567 0.79869
RegenerationR3 2.361 0.974 0.38449 0.79273
RegenerationR4 2.092 0.974 0.62454 0.92200
RegenerationR5 1.622 0.974 0.49413 0.85540
RegenerationR6 1.72 0.974 0.36602 0.70946
RegenerationBL 0.663 0.974 0.99985 1.00000
RegenerationTP 1.214 0.974 0.99986 1.00000


Genes with expression patterns similar to MligTC455_10479

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_10479 22 0.47 Mlig455_043933

Neo: -

Age: Up-Down-Down

 GRIK3 2 - 1.000 - - - 1.000 Mlig455_043933 {REF} {Length: 4305} {Pfam: Ligand-gated ion channel [PF00060.28, score=180.3]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=98.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=66.8]; Receptor family ligand binding region [PF01094.30, score=65.9]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=574, Expect=0.0]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=560, Expect=0.0]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=552, Expect=0.0]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=575, Expect=0.0]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=556, Expect=0.0]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=550, Expect=1e-180]} {Dmel: FBgn0038837, CG3822, [Score=586, Expect=0.0]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=422, Expect=9e-133]} {Smed: dd_Smed_v6_8816_0_1, dd_Smed_v6_8816_0_1, [Score=659, Expect=0.0]} {RNA1509_46749} {RNA1310_29846} {RNA815_14316}
2. MligTC455_16414 14 0.3 Mlig455_013104, Mlig455_013105, Mlig455_013196

Neo: -

Age: -

 0.959 - - - - - 0.959

Mlig455_013104 {REF} {Length: 1463} {Pfam: Otopetrin [PF03189.15, score=141.6]} {Dmel: FBgn0259150, CG42265, [Score=108, Expect=1e-24]} {Celegans: WBGene00018478, otpl-5, OToPetrin-Like, [Score=72.4, Expect=2e-13]} {Smed: dd_Smed_v6_13612_0_1, dd_Smed_v6_13612_0_1, [Score=149, Expect=3e-39]} {RNA1310_41610} {RNA815_23013}

Mlig455_013105 {REF} {Length: 1349} {NoTransDecoderORF} {RNA1310_145084}

Mlig455_013196 {REF} {Length: 3450} {Pfam: Otopetrin [PF03189.15, score=153.6]} {Dmel: FBgn0259150, CG42265, [Score=121, Expect=1e-28]} {Celegans: WBGene00018478, otpl-5, OToPetrin-Like, [Score=84.0, Expect=6e-17]} {Smed: dd_Smed_v6_13612_0_1, dd_Smed_v6_13612_0_1, [Score=149, Expect=6e-39]} {RNA1509_43613} {RNA1310_41610} {RNA815_23013}
3. MligTC455_40111 18 0.38 Mlig455_029309, Mlig455_029331

Neo: -

Age: -

 CDC42, RHOD 0.955 - - - - - 0.955

Mlig455_029309 {REF} {Length: 1633} {Pfam: Ras family [PF00071.24, score=54.1]} {Human: ENSG00000070831, CDC42, cell division cycle 42, [Score=86.7, Expect=1e-20]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=86.7, Expect=1e-20]; ENSG00000119729, RHOQ, ras homolog family member Q, [Score=86.3, Expect=2e-20]; ENSG00000126785, RHOJ, ras homolog family member J, [Score=85.1, Expect=5e-20]; ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=83.2, Expect=2e-19]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=86.7, Expect=7e-21]; ENSMUSG00000024143, Rhoq, ras homolog family member Q, [Score=85.9, Expect=1e-20]; ENSMUSG00000046768, Rhoj, ras homolog family member J, [Score=85.1, Expect=4e-20]; ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=83.2, Expect=1e-19]} {Dmel: FBgn0010341, Cdc42, [Score=90.1, Expect=2e-22]} {Celegans: WBGene00004357, rho-1, Ras-like GTP-binding protein rhoA, [Score=90.9, Expect=9e-23]} {Smed: dd_Smed_v6_578_0_1, dd_Smed_v6_578_0_1, [Score=81.6, Expect=2e-19]} {RNA1310_40082}

Mlig455_029331 {REF} {Length: 2723} {Pfam: Ras family [PF00071.24, score=69.4]} {Human: ENSG00000173156, RHOD, ras homolog family member D, [Score=102, Expect=3e-26]; ENSG00000070831, CDC42, cell division cycle 42, [Score=101, Expect=5e-26]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=101, Expect=5e-26]; ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=99.0, Expect=5e-25]; ENSG00000284984, RHOU, ras homolog family member U, [Score=98.6, Expect=2e-24]; ENSG00000119729, RHOQ, ras homolog family member Q, [Score=98.6, Expect=8e-25]; ENSG00000116574, RHOU, ras homolog family member U, [Score=98.6, Expect=2e-24]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=101, Expect=3e-26]; ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=99.0, Expect=3e-25]; ENSMUSG00000039960, Rhou, ras homolog family member U, [Score=99.0, Expect=1e-24]; ENSMUSG00000024143, Rhoq, ras homolog family member Q, [Score=98.2, Expect=7e-25]} {Dmel: FBgn0010341, Cdc42, [Score=105, Expect=5e-28]} {Celegans: WBGene00004357, rho-1, Ras-like GTP-binding protein rhoA, [Score=104, Expect=1e-27]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=94.7, Expect=6e-24]} {RNA1509_28474} {RNA1310_40082} {RNA815_17593}
4. MligTC455_07318 34 0.72 Mlig455_056720, Mlig455_060298

Neo: -

Age: -

Region-enriched R2: 11.278/0.00008

Regeneration-downregulated R2: -4.848

Regeneration-depleted R2: -4.848

 0.95 - 0.950 - - - -

Mlig455_056720 {REF} {Length: 2957} {RNA1310_123874} {RNA815_45268}

Mlig455_060298 {REF} {Length: 3078} {RNA1310_82897} {RNA815_45268}

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