TomoSeq data search

Data search

Results for MligTC455_16414

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_16414	14	0.30	Mlig455_013104, Mlig455_013105, Mlig455_013196	Neo: - Age: -		Mlig455_013104 {REF} {Length: 1463} {Pfam: Otopetrin [PF03189.15, score=141.6]} {Dmel: FBgn0259150, CG42265, [Score=108, Expect=1e-24]} {Celegans: WBGene00018478, otpl-5, OToPetrin-Like, [Score=72.4, Expect=2e-13]} {Smed: dd_Smed_v6_13612_0_1, dd_Smed_v6_13612_0_1, [Score=149, Expect=3e-39]} {RNA1310_41610} {RNA815_23013} Mlig455_013105 {REF} {Length: 1349} {NoTransDecoderORF} {RNA1310_145084} Mlig455_013196 {REF} {Length: 3450} {Pfam: Otopetrin [PF03189.15, score=153.6]} {Dmel: FBgn0259150, CG42265, [Score=121, Expect=1e-28]} {Celegans: WBGene00018478, otpl-5, OToPetrin-Like, [Score=84.0, Expect=6e-17]} {Smed: dd_Smed_v6_13612_0_1, dd_Smed_v6_13612_0_1, [Score=149, Expect=6e-39]} {RNA1509_43613} {RNA1310_41610} {RNA815_23013}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_16414

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	4.192	0.68	0.99994	1.00000
RegionR2	-3.469	0.68	0.99991	1.00000
RegionR3	-0.421	0.68	0.99990	1.00000
RegionR4	2.253	0.68	0.99981	1.00000
RegionR5	0.966	0.68	0.99951	1.00000
RegionR6	-0.432	0.68	0.99985	1.00000
RegionR7	0.596	0.68	0.99983	1.00000
RegionR8	-3.686	0.68	0.99992	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-1.382	0.68	0.99997	1.00000
RegenerationR2	1.541	0.68	0.99993	1.00000
RegenerationR3	0.227	0.68	0.99949	1.00000
RegenerationR4	-0.591	0.68	0.99972	1.00000
RegenerationR5	-0.27	0.68	0.99962	1.00000
RegenerationR6	-0.818	0.68	0.99989	1.00000
RegenerationBL	1.513	0.68	0.99990	1.00000
RegenerationTP	-2.296	0.68	0.99997	1.00000

Genes with expression patterns similar to MligTC455_16414

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_16414	14	0.3	Mlig455_013104, Mlig455_013105, Mlig455_013196	Neo: - Age: -		1	-	-	-	-	-	1.000	Mlig455_013104 {REF} {Length: 1463} {Pfam: Otopetrin [PF03189.15, score=141.6]} {Dmel: FBgn0259150, CG42265, [Score=108, Expect=1e-24]} {Celegans: WBGene00018478, otpl-5, OToPetrin-Like, [Score=72.4, Expect=2e-13]} {Smed: dd_Smed_v6_13612_0_1, dd_Smed_v6_13612_0_1, [Score=149, Expect=3e-39]} {RNA1310_41610} {RNA815_23013} Mlig455_013105 {REF} {Length: 1349} {NoTransDecoderORF} {RNA1310_145084} Mlig455_013196 {REF} {Length: 3450} {Pfam: Otopetrin [PF03189.15, score=153.6]} {Dmel: FBgn0259150, CG42265, [Score=121, Expect=1e-28]} {Celegans: WBGene00018478, otpl-5, OToPetrin-Like, [Score=84.0, Expect=6e-17]} {Smed: dd_Smed_v6_13612_0_1, dd_Smed_v6_13612_0_1, [Score=149, Expect=6e-39]} {RNA1509_43613} {RNA1310_41610} {RNA815_23013}
2.	MligTC455_40111	18	0.38	Mlig455_029309, Mlig455_029331	Neo: - Age: -	CDC42, RHOD	0.962	-	-	-	-	-	0.962	Mlig455_029309 {REF} {Length: 1633} {Pfam: Ras family [PF00071.24, score=54.1]} {Human: ENSG00000070831, CDC42, cell division cycle 42, [Score=86.7, Expect=1e-20]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=86.7, Expect=1e-20]; ENSG00000119729, RHOQ, ras homolog family member Q, [Score=86.3, Expect=2e-20]; ENSG00000126785, RHOJ, ras homolog family member J, [Score=85.1, Expect=5e-20]; ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=83.2, Expect=2e-19]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=86.7, Expect=7e-21]; ENSMUSG00000024143, Rhoq, ras homolog family member Q, [Score=85.9, Expect=1e-20]; ENSMUSG00000046768, Rhoj, ras homolog family member J, [Score=85.1, Expect=4e-20]; ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=83.2, Expect=1e-19]} {Dmel: FBgn0010341, Cdc42, [Score=90.1, Expect=2e-22]} {Celegans: WBGene00004357, rho-1, Ras-like GTP-binding protein rhoA, [Score=90.9, Expect=9e-23]} {Smed: dd_Smed_v6_578_0_1, dd_Smed_v6_578_0_1, [Score=81.6, Expect=2e-19]} {RNA1310_40082} Mlig455_029331 {REF} {Length: 2723} {Pfam: Ras family [PF00071.24, score=69.4]} {Human: ENSG00000173156, RHOD, ras homolog family member D, [Score=102, Expect=3e-26]; ENSG00000070831, CDC42, cell division cycle 42, [Score=101, Expect=5e-26]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=101, Expect=5e-26]; ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=99.0, Expect=5e-25]; ENSG00000284984, RHOU, ras homolog family member U, [Score=98.6, Expect=2e-24]; ENSG00000119729, RHOQ, ras homolog family member Q, [Score=98.6, Expect=8e-25]; ENSG00000116574, RHOU, ras homolog family member U, [Score=98.6, Expect=2e-24]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=101, Expect=3e-26]; ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=99.0, Expect=3e-25]; ENSMUSG00000039960, Rhou, ras homolog family member U, [Score=99.0, Expect=1e-24]; ENSMUSG00000024143, Rhoq, ras homolog family member Q, [Score=98.2, Expect=7e-25]} {Dmel: FBgn0010341, Cdc42, [Score=105, Expect=5e-28]} {Celegans: WBGene00004357, rho-1, Ras-like GTP-binding protein rhoA, [Score=104, Expect=1e-27]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=94.7, Expect=6e-24]} {RNA1509_28474} {RNA1310_40082} {RNA815_17593}
3.	MligTC455_10479	22	0.47	Mlig455_043933	Neo: - Age: Up-Down-Down	GRIK3	0.959	-	-	-	-	-	0.959	Mlig455_043933 {REF} {Length: 4305} {Pfam: Ligand-gated ion channel [PF00060.28, score=180.3]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=98.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=66.8]; Receptor family ligand binding region [PF01094.30, score=65.9]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=574, Expect=0.0]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=560, Expect=0.0]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=552, Expect=0.0]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=575, Expect=0.0]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=556, Expect=0.0]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=550, Expect=1e-180]} {Dmel: FBgn0038837, CG3822, [Score=586, Expect=0.0]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=422, Expect=9e-133]} {Smed: dd_Smed_v6_8816_0_1, dd_Smed_v6_8816_0_1, [Score=659, Expect=0.0]} {RNA1509_46749} {RNA1310_29846} {RNA815_14316}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_16414

0.3

Mlig455_013104, Mlig455_013105, Mlig455_013196

Neo: -

Age: -

1.000

Mlig455_013105 {REF} {Length: 1349} {NoTransDecoderORF} {RNA1310_145084}

MligTC455_40111

0.38

Mlig455_029309, Mlig455_029331

Neo: -

Age: -

CDC42, RHOD

0.962

Mlig455_029309 {REF} {Length: 1633} {Pfam: Ras family [PF00071.24, score=54.1]} {Human: ENSG00000070831, CDC42, cell division cycle 42, [Score=86.7, Expect=1e-20]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=86.7, Expect=1e-20]; ENSG00000119729, RHOQ, ras homolog family member Q, [Score=86.3, Expect=2e-20]; ENSG00000126785, RHOJ, ras homolog family member J, [Score=85.1, Expect=5e-20]; ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=83.2, Expect=2e-19]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=86.7, Expect=7e-21]; ENSMUSG00000024143, Rhoq, ras homolog family member Q, [Score=85.9, Expect=1e-20]; ENSMUSG00000046768, Rhoj, ras homolog family member J, [Score=85.1, Expect=4e-20]; ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=83.2, Expect=1e-19]} {Dmel: FBgn0010341, Cdc42, [Score=90.1, Expect=2e-22]} {Celegans: WBGene00004357, rho-1, Ras-like GTP-binding protein rhoA, [Score=90.9, Expect=9e-23]} {Smed: dd_Smed_v6_578_0_1, dd_Smed_v6_578_0_1, [Score=81.6, Expect=2e-19]} {RNA1310_40082}

Mlig455_029331 {REF} {Length: 2723} {Pfam: Ras family [PF00071.24, score=69.4]} {Human: ENSG00000173156, RHOD, ras homolog family member D, [Score=102, Expect=3e-26]; ENSG00000070831, CDC42, cell division cycle 42, [Score=101, Expect=5e-26]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=101, Expect=5e-26]; ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=99.0, Expect=5e-25]; ENSG00000284984, RHOU, ras homolog family member U, [Score=98.6, Expect=2e-24]; ENSG00000119729, RHOQ, ras homolog family member Q, [Score=98.6, Expect=8e-25]; ENSG00000116574, RHOU, ras homolog family member U, [Score=98.6, Expect=2e-24]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=101, Expect=3e-26]; ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=99.0, Expect=3e-25]; ENSMUSG00000039960, Rhou, ras homolog family member U, [Score=99.0, Expect=1e-24]; ENSMUSG00000024143, Rhoq, ras homolog family member Q, [Score=98.2, Expect=7e-25]} {Dmel: FBgn0010341, Cdc42, [Score=105, Expect=5e-28]} {Celegans: WBGene00004357, rho-1, Ras-like GTP-binding protein rhoA, [Score=104, Expect=1e-27]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=94.7, Expect=6e-24]} {RNA1509_28474} {RNA1310_40082} {RNA815_17593}

MligTC455_10479

0.47

Mlig455_043933

Neo: -

Age: Up-Down-Down

GRIK3

0.959

Mlig455_043933 {REF} {Length: 4305} {Pfam: Ligand-gated ion channel [PF00060.28, score=180.3]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=98.5]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=66.8]; Receptor family ligand binding region [PF01094.30, score=65.9]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=574, Expect=0.0]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=560, Expect=0.0]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=552, Expect=0.0]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=575, Expect=0.0]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=556, Expect=0.0]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=550, Expect=1e-180]} {Dmel: FBgn0038837, CG3822, [Score=586, Expect=0.0]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=422, Expect=9e-133]} {Smed: dd_Smed_v6_8816_0_1, dd_Smed_v6_8816_0_1, [Score=659, Expect=0.0]} {RNA1509_46749} {RNA1310_29846} {RNA815_14316}