M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_10497

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_10497 59 1.22 Mlig455_003070, Mlig455_003282

Neo: -

Age: -

Mlig455_003070 {REF} {Length: 1416} {TRANSSPLICED} {Celegans: WBGene00015646, mlt-10, [Score=62.4, Expect=4e-10]} {RNA1509_1084} {RNA1310_11603.1} {RNA815_6849.1}

Mlig455_003282 {REF} {Length: 1209} {TRANSSPLICED} {Celegans: WBGene00015646, mlt-10, [Score=63.5, Expect=1e-10]} {RNA1509_1084} {RNA1310_11603.1} {RNA815_6849.1}

Cumulative graph for MligTC455_10497

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.24 1.049 0.99998 1.00000
RegionR2 -0.959 1.049 0.99986 1.00000
RegionR3 0.159 1.049 0.99998 1.00000
RegionR4 0.803 1.049 1.00000 1.00000
RegionR5 0.492 1.049 1.00000 1.00000
RegionR6 -0.137 1.049 0.99997 1.00000
RegionR7 -0.238 1.049 1.00000 1.00000
RegionR8 0.119 1.049 0.99996 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.638 1.049 1.00000 1.00000
RegenerationR2 3.331 1.049 0.01826 0.22148
RegenerationR3 3.184 1.049 0.08206 0.46943
RegenerationR4 3.637 1.049 0.01209 0.16930
RegenerationR5 1.618 1.049 0.20081 0.63368
RegenerationR6 3.186 1.049 0.10257 0.39661
RegenerationBL -0.808 1.049 0.99996 1.00000
RegenerationTP 4.457 1.049 0.10232 0.49681


Genes with expression patterns similar to MligTC455_10497

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_10497 59 1.22 Mlig455_003070, Mlig455_003282

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000

Mlig455_003070 {REF} {Length: 1416} {TRANSSPLICED} {Celegans: WBGene00015646, mlt-10, [Score=62.4, Expect=4e-10]} {RNA1509_1084} {RNA1310_11603.1} {RNA815_6849.1}

Mlig455_003282 {REF} {Length: 1209} {TRANSSPLICED} {Celegans: WBGene00015646, mlt-10, [Score=63.5, Expect=1e-10]} {RNA1509_1084} {RNA1310_11603.1} {RNA815_6849.1}
2. MligTC455_31679 20 0.43 Mlig455_022701

Neo: -

Age: -

 PIF1 0.988 - - - - 0.988 - Mlig455_022701 {REF} {Length: 5983} {Pfam: PIF1-like helicase [PF05970.16, score=331.9]; Helitron helicase-like domain at N-terminus [PF14214.8, score=200.2]; AAA domain [PF13604.8, score=45.4]; Helicase [PF02689.16, score=23.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=19.6]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=90.1, Expect=2e-17]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=91.3, Expect=4e-18]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=89.0, Expect=2e-17]} {Celegans: WBGene00019136, F59H6.5, [RH, Score=800, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=106, Expect=3e-23]} {RNA1509_7410} {RNA1310_1350} {RNA815_358.1}
3. MligTC455_09478 42 0.88 Mlig455_008774

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_008774 {REF} {Length: 1365} {Pfam: RAM signalling pathway protein [PF10428.11, score=19.4]} {RNA1509_53279} {RNA1310_34746} {RNA815_43491}
4. MligTC455_39158 46 0.97 Mlig455_052312

Neo: -

Age: -

 UNC93A 0.965 - - - - 0.965 - Mlig455_052312 {REF} {Length: 1515} {Pfam: Major Facilitator Superfamily [PF07690.18, score=40.4]} {Human: ENSG00000112494, UNC93A, unc-93 homolog A, [Score=169, Expect=6e-47]} {Mouse: ENSMUSG00000056133, Unc93a2, unc-93 homolog A2, [Score=162, Expect=1e-44]; ENSMUSG00000067049, Unc93a, unc-93 homolog A, [Score=162, Expect=2e-44]} {Dmel: FBgn0027556, CG4928, [Score=197, Expect=3e-57]} {Celegans: WBGene00006822, unc-93, Putative potassium channel regulatory protein unc-93, [Score=145, Expect=2e-37]} {RNA1310_8603.1} {RNA815_11843}
5. MligTC455_10243 5 0.11 Mlig455_039297

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_039297 {REF} {Length: 298} {NoTransDecoderORF} {RNA1310_98764}
6. MligTC455_52919 5 0.09 Mlig455_061201

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_061201 {REF} {Length: 2469} {TRANSSPLICED} {Celegans: WBGene00015662, C10A4.1, [Score=65.5, Expect=6e-12]} {Smed: dd_Smed_v6_87095_0_1, dd_Smed_v6_87095_0_1, [Score=53.9, Expect=5e-09]} {RNA1509_47751} {RNA1310_29032, RNA1509_47751}
7. MligTC455_17428 38 0.79 Mlig455_000979, Mlig455_037506

Neo: -

Age: -

 0.959 - - - - - 0.959

Mlig455_000979 {REF} {Length: 776} {NoTransDecoderORF} {RNA1310_141381}

Mlig455_037506 {REF} {Length: 714} {NoTransDecoderORF} {RNA1310_141381}
8. MligTC455_37254 145 3.01 Mlig455_058857

Neo: -

Age: -

 ZFAND2B 0.959 - - - 0.959 - - Mlig455_058857 {REF} {Length: 1471} {TRANSSPLICED} {Pfam: AN1-like Zinc finger [PF01428.18, score=74.1]} {Human: ENSG00000158552, ZFAND2B, zinc finger AN1-type containing 2B, [RH, Score=196, Expect=8e-62]} {Mouse: ENSMUSG00000026197, Zfand2b, zinc finger, AN1 type domain 2B, [RH, Score=192, Expect=3e-60]} {Dmel: FBgn0031535, CG12795, [RH, Score=179, Expect=2e-55]} {Celegans: WBGene00000097, aip-1, Arsenite Inducible Protein, [RH, Score=122, Expect=2e-34]} {Smed: dd_Smed_v6_9366_0_1, dd_Smed_v6_9366_0_1, [RH, Score=134, Expect=6e-39]} {RNA1509_12174} {RNA1310_22891.1} {RNA815_19532}
9. MligTC455_13556 124 2.58 Mlig455_064288

Neo: Neoblast

Age: -

 COA7 0.956 - - - - 0.956 - Mlig455_064288 {REF} {Length: 1396} {TRANSSPLICED} {Pfam: Sel1 repeat [PF08238.14, score=23.4]} {Human: ENSG00000162377, COA7, cytochrome c oxidase assembly factor 7 (putative), [Score=50.1, Expect=7e-07]} {Mouse: ENSMUSG00000048351, Coa7, cytochrome c oxidase assembly factor 7, [Score=48.1, Expect=3e-06]} {Dmel: FBgn0039965, CG13865, [RH, Score=65.9, Expect=2e-12]} {RNA1509_45906} {RNA1310_37650.1, RNA1509_45906} {RNA1509_45906, RNA815_47606}
10. MligTC455_14836 12 0.26 Mlig455_069790

Neo: -

Age: -

 0.954 - - - 0.954 - - Mlig455_069790 {REF} {Length: 1585} {NoTransDecoderORF}
11. MligTC455_11981 20 0.42 Mlig455_039506

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_039506 {REF} {Length: 1301} {RNA1310_121196}
12. MligTC455_40084 79 1.65 Mlig455_046693

Neo: Int S/G2/M

Age: -

 SNAPC3 0.951 - - - - 0.951 - Mlig455_046693 {REF} {Length: 3322} {TRANSSPLICED} {Pfam: snRNA-activating protein complex (SNAPc), subunit 3 [PF12251.10, score=123.0]} {Human: ENSG00000164975, SNAPC3, small nuclear RNA activating complex polypeptide 3, [RH, Score=84.7, Expect=3e-17]} {Mouse: ENSMUSG00000028483, Snapc3, small nuclear RNA activating complex, polypeptide 3, [RH, Score=89.7, Expect=4e-19]} {Celegans: WBGene00021667, snpc-3.2, SNAPc (Small Nuclear RNA Activating Complex) homolog, [RH, Score=70.9, Expect=4e-13]} {Smed: dd_Smed_v6_9421_0_1, dd_Smed_v6_9421_0_1, [RH, Score=120, Expect=2e-30]} {RNA1509_41696} {RNA1310_22781.3, RNA1509_41696} {RNA1509_41696, RNA815_25555}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA