M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13556

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13556 124 2.58 Mlig455_064288

Neo: Neoblast

Age: -

 COA7 Mlig455_064288 {REF} {Length: 1396} {TRANSSPLICED} {Pfam: Sel1 repeat [PF08238.14, score=23.4]} {Human: ENSG00000162377, COA7, cytochrome c oxidase assembly factor 7 (putative), [Score=50.1, Expect=7e-07]} {Mouse: ENSMUSG00000048351, Coa7, cytochrome c oxidase assembly factor 7, [Score=48.1, Expect=3e-06]} {Dmel: FBgn0039965, CG13865, [RH, Score=65.9, Expect=2e-12]} {RNA1509_45906} {RNA1310_37650.1, RNA1509_45906} {RNA1509_45906, RNA815_47606}

Cumulative graph for MligTC455_13556

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.717 2.307 0.10598 0.68251
RegionR2 1.569 2.307 0.19809 0.55721
RegionR3 1.184 2.307 0.21036 0.75183
RegionR4 0.497 2.307 0.65950 0.95958
RegionR5 0.709 2.307 0.46366 0.82593
RegionR6 0.489 2.307 0.62902 1.00000
RegionR7 0.285 2.307 0.76304 1.00000
RegionR8 1.983 2.307 0.09929 0.59222

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.281 2.307 1.00000 1.00000
RegenerationR2 -1.415 2.307 0.17614 0.61681
RegenerationR3 1.364 2.307 0.10651 0.51607
RegenerationR4 0.965 2.307 0.27316 0.71910
RegenerationR5 0.341 2.307 0.63055 0.92277
RegenerationR6 1.542 2.307 0.09542 0.38430
RegenerationBL -0.083 2.307 0.95552 1.00000
RegenerationTP -0.255 2.307 0.85579 1.00000


Genes with expression patterns similar to MligTC455_13556

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13556 124 2.58 Mlig455_064288

Neo: Neoblast

Age: -

 COA7 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_064288 {REF} {Length: 1396} {TRANSSPLICED} {Pfam: Sel1 repeat [PF08238.14, score=23.4]} {Human: ENSG00000162377, COA7, cytochrome c oxidase assembly factor 7 (putative), [Score=50.1, Expect=7e-07]} {Mouse: ENSMUSG00000048351, Coa7, cytochrome c oxidase assembly factor 7, [Score=48.1, Expect=3e-06]} {Dmel: FBgn0039965, CG13865, [RH, Score=65.9, Expect=2e-12]} {RNA1509_45906} {RNA1310_37650.1, RNA1509_45906} {RNA1509_45906, RNA815_47606}
2. MligTC455_52984 33 0.68 Mlig455_019834

Neo: -

Age: -

Region-enriched R4: 4.044/0.04428

 1.71 - - 0.977 0.733 - - Mlig455_019834 {REF} {Length: 1707} {TRANSSPLICED}
3. MligTC455_14090 100 2.08 Mlig455_013210, Mlig455_013233

Neo: -

Age: -

Region-enriched R4: 3.427/0.02472

 0.991 - - 0.991 - - -

Mlig455_013210 {REF} {Length: 533} {NoTransDecoderORF} {RNA1509_55811} {RNA1310_18367} {RNA815_28003}

Mlig455_013233 {REF} {Length: 1112} {NoTransDecoderORF} {RNA1509_55811} {RNA1310_18367} {RNA815_28003}
4. MligTC455_00835 5 0.1 Mlig455_026019

Neo: -

Age: -

 0.98 - - - - 0.980 - Mlig455_026019 {REF} {Length: 362} {Pfam: Fungal N-terminal domain of STAND proteins [PF17111.7, score=23.1]; Borrelia Bbcrasp-1 domain containing protein [PF05714.13, score=19.5]; N-terminal domain on NACHT_NTPase and P-loop NTPases [PF17107.7, score=19.2]}
5. MligTC455_10482 25 0.52 Mlig455_011954

Neo: -

Age: -

Region-enriched R4: 6.213/0.00775

 0.98 - - 0.980 - - - Mlig455_011954 {REF} {Length: 420} {TRANSSPLICED} {RNA1310_98653}
6. MligTC455_18825 100 2.08 Mlig455_046641, Mlig455_046661

Neo: -

Age: Down-Down-Up

 0.98 - - 0.980 - - -

Mlig455_046641 {REF} {Length: 1925} {RNA1310_39270} {RNA815_46731}

Mlig455_046661 {REF} {Length: 1636} {TRANSSPLICED} {RNA1310_39270} {RNA815_46731}
7. MligTC455_07576 29 0.6 Mlig455_006213

Neo: -

Age: -

 0.977 - - 0.977 - - - Mlig455_006213 {REF} {Length: 257} {NoTransDecoderORF}
8. MligTC455_20800 22 0.46 Mlig455_036668

Neo: Germline

Age: -

 0.977 - - 0.977 - - - Mlig455_036668 {REF} {Length: 967} {RNA1310_38630} {RNA815_25111}
9. MligTC455_41383 18 0.38 Mlig455_035165

Neo: -

Age: -

Region-enriched R4: 6.475/0.02758

 0.977 - - 0.977 - - - Mlig455_035165 {REF} {Length: 645} {NoTransDecoderORF} {RNA1310_64610} {RNA815_33970}
10. MligTC455_52510 20 0.42 Mlig455_035967

Neo: -

Age: -

Region-enriched R4: 7.862/0.00189

 PCDH9 0.977 - - 0.977 - - - Mlig455_035967 {REF} {Length: 5215} {Pfam: Cadherin domain [PF00028.19, score=273.7]; Cadherin-like [PF16184.7, score=35.6]; Cadherin-like [PF08266.14, score=27.6]} {Human: ENSG00000184226, PCDH9, protocadherin 9, [Score=300, Expect=2e-84]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=293, Expect=2e-81]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=292, Expect=4e-81]} {Mouse: ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=300, Expect=3e-85]; ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=290, Expect=1e-80]} {Dmel: FBgn0284247, ds, dachsous, [Score=263, Expect=2e-71]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=197, Expect=1e-50]} {Smed: dd_Smed_v6_18373_0_1, dd_Smed_v6_18373_0_1, [RH, Score=360, Expect=8e-106]} {RNA1509_44488} {RNA1310_10484} {RNA815_42584}
11. MligTC455_52512 23 0.48 Mlig455_064032

Neo: -

Age: -

Region-enriched R4: 7.921/0.00174
Region-enriched R5: 3.294/0.04990

 0.977 - - 0.977 - - - Mlig455_064032 {REF} {Length: 618} {NoTransDecoderORF} {RNA1310_79884.1} {RNA815_42584}
12. MligTC455_53664 95 1.98 Mlig455_009492

Neo: -

Age: -

 0.977 - - 0.977 - - - Mlig455_009492 {REF} {Length: 6572} {RNA1509_42922} {RNA1310_48548} {RNA815_18455}
13. MligTC455_02548 38 0.79 Mlig455_018036

Neo: -

Age: -

 0.976 - - 0.976 - - - Mlig455_018036 {REF} {Length: 1415} {Pfam: RNase H [PF00075.26, score=48.1]} {RNA1310_45628} {RNA815_47624}
14. MligTC455_08866 45 0.93 Mlig455_065686

Neo: -

Age: Up-Down-Up

 0.976 - - 0.976 - - - Mlig455_065686 {REF} {Length: 4864} {TRANSSPLICED} {RNA1509_47916} {RNA1310_26797} {RNA815_42098}
15. MligTC455_09986 116 2.42 Mlig455_049841

Neo: -

Age: Up-Up-Down

 0.975 - - 0.975 - - - Mlig455_049841 {REF} {Length: 1272} {RNA1509_29754} {RNA1310_28041.2} {RNA815_15663}
16. MligTC455_26131 63 1.32 Mlig455_009663

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_009663 {REF} {Length: 2874} {RNA1509_46710} {RNA1310_18270} {RNA815_22851}
17. MligTC455_33725 46 0.96 Mlig455_059862

Neo: -

Age: -

 0.973 - - 0.973 - - - Mlig455_059862 {REF} {Length: 2526} {tRNA: Asp(GTC), score=67.3} {RNA1310_22634} {RNA815_27671}
18. MligTC455_32576 34 0.71 Mlig455_000620

Neo: -

Age: -

 0.972 - - 0.972 - - - Mlig455_000620 {REF} {Length: 2527} {NoTransDecoderORF} {RNA1509_58448} {RNA1310_87871} {RNA815_2684.1}
19. MligTC455_13442 25 0.52 Mlig455_016258

Neo: -

Age: -

 0.97 - - 0.970 - - - Mlig455_016258 {REF} {Length: 1815} {NoTransDecoderORF} {tRNA: Val(CAC),pseudo, score=22.2} {RNA1509_45595} {RNA1310_43553} {RNA815_31207}
20. MligTC455_14889 208 4.32 Mlig455_006489, Mlig455_042232, Mlig455_056390, Mlig455_058598, Mlig455_070107, Mlig455_070775

Neo: -

Age: -

 0.97 - - 0.970 - - -

Mlig455_006489 {REF} {Length: 2624} {RNA1509_43399} {RNA1310_12943} {RNA815_24445}

Mlig455_042232 {REF} {Length: 2149} {TRANSSPLICED} {RNA1509_40891} {RNA1310_12069} {RNA815_24445}

Mlig455_056390 {REF} {Length: 4036} {RNA1509_43399} {RNA1310_12943} {RNA815_24445}

Mlig455_058598 {REF} {Length: 4352} {Pfam: Helix-turn-helix domain of transposase family ISL3 [PF13542.8, score=23.1]} {RNA1509_43399} {RNA1310_12943} {RNA815_24445}

Mlig455_070107 {REF} {Length: 2001} {RNA1509_43399} {RNA1310_12943} {RNA815_24445}

Mlig455_070775 {REF} {Length: 4555} {RNA1509_43399} {RNA1310_12943} {RNA815_24445}
21. MligTC455_13174 44 0.93 Mlig455_006298

Neo: -

Age: Down-Up-Down

 0.969 - - - - 0.969 - Mlig455_006298 {REF} {Length: 1246} {RNA1310_54678} {RNA815_22239.1}
22. MligTC455_38016 51 1.07 Mlig455_054344

Neo: -

Age: Down-Up-Down

 CFAP53 0.969 - - 0.969 - - - Mlig455_054344 {REF} {Length: 2687} {Pfam: Trichohyalin-plectin-homology domain [PF13868.8, score=77.5]} {Human: ENSG00000172361, CFAP53, cilia and flagella associated protein 53, [RH, Score=172, Expect=9e-47]} {Mouse: ENSMUSG00000035394, Cfap53, cilia and flagella associated protein 53, [RH, Score=166, Expect=7e-45]} {Smed: dd_Smed_v6_3219_0_1, dd_Smed_v6_3219_0_1, [RH, Score=302, Expect=1e-96]} {RNA1509_1100} {RNA1310_13648, RNA1509_1100} {RNA1509_1100, RNA815_5728}
23. MligTC455_09445 68 1.41 Mlig455_034437

Neo: -

Age: -

 0.968 - - 0.968 - - - Mlig455_034437 {REF} {Length: 1224} {TRANSSPLICED}
24. MligTC455_31248 69 1.45 Mlig455_022852

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.396

 GABBR2 0.968 - - 0.968 - - - Mlig455_022852 {REF} {Length: 3570} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=161.8]; Receptor family ligand binding region [PF01094.30, score=99.7]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=231, Expect=2e-63]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=228, Expect=1e-62]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=221, Expect=6e-60]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=209, Expect=1e-56]} {Smed: dd_Smed_v6_51663_0_1, dd_Smed_v6_51663_0_1, [Score=131, Expect=5e-34]} {RNA1509_26993} {RNA1310_7927.1} {RNA815_4866.1}
25. MligTC455_43675 75 1.56 Mlig455_046679

Neo: -

Age: -

 0.965 - - 0.965 - - - Mlig455_046679 {REF} {Length: 2337} {RNA1509_19077} {RNA1310_37453.1} {RNA815_8862.2}
26. MligTC455_47569 100 2.08 Mlig455_006613

Neo: -

Age: -

Region-enriched R4: 5.038/0.00332
Region-enriched R5: 3.700/0.01083

 PHF5A 0.964 - - 0.964 - - - Mlig455_006613 {REF} {Length: 1064} {TRANSSPLICED} {tRNA: Met(CAT),pseudo, score=31.4} {Pfam: PHF5-like protein [PF03660.16, score=168.0]} {Human: ENSG00000100410, PHF5A, PHD finger protein 5A, [RH, Score=212, Expect=1e-72]} {Mouse: ENSMUSG00000061360, Phf5a, PHD finger protein 5A, [RH, Score=212, Expect=8e-73]} {Dmel: FBgn0031822, Phf5a, PHD finger protein 5a, [RH, Score=206, Expect=1e-70]} {Celegans: WBGene00004016, phf-5, PHF-5; PHd Finger family, [RH, Score=206, Expect=1e-70]} {Smed: dd_Smed_v6_2656_0_1, dd_Smed_v6_2656_0_1, [RH, Score=203, Expect=1e-69]} {RNA1509_47058, RNA1509_5116} {RNA1310_35145.2, RNA1509_47058, RNA1509_5116} {RNA1509_47058, RNA1509_5116, RNA815_35454.1}
27. MligTC455_10243 5 0.11 Mlig455_039297

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_039297 {REF} {Length: 298} {NoTransDecoderORF} {RNA1310_98764}
28. MligTC455_52919 5 0.09 Mlig455_061201

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_061201 {REF} {Length: 2469} {TRANSSPLICED} {Celegans: WBGene00015662, C10A4.1, [Score=65.5, Expect=6e-12]} {Smed: dd_Smed_v6_87095_0_1, dd_Smed_v6_87095_0_1, [Score=53.9, Expect=5e-09]} {RNA1509_47751} {RNA1310_29032, RNA1509_47751}
29. MligTC455_07249 26 0.54 Mlig455_045047

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_045047 {REF} {Length: 2419} {Pfam: Major Facilitator Superfamily [PF07690.18, score=17.6]} {RNA1310_108250}
30. MligTC455_41742 48 1 Mlig455_002367, Mlig455_044569

Neo: -

Age: -

 0.959 - - 0.959 - - -

Mlig455_002367 {REF} {Length: 416} {RNA1310_97120} {RNA815_50408}

Mlig455_044569 {REF} {Length: 416} {RNA1310_97120} {RNA815_50408}
31. MligTC455_10497 59 1.22 Mlig455_003070, Mlig455_003282

Neo: -

Age: -

 0.956 - - - - 0.956 -

Mlig455_003070 {REF} {Length: 1416} {TRANSSPLICED} {Celegans: WBGene00015646, mlt-10, [Score=62.4, Expect=4e-10]} {RNA1509_1084} {RNA1310_11603.1} {RNA815_6849.1}

Mlig455_003282 {REF} {Length: 1209} {TRANSSPLICED} {Celegans: WBGene00015646, mlt-10, [Score=63.5, Expect=1e-10]} {RNA1509_1084} {RNA1310_11603.1} {RNA815_6849.1}
32. MligTC455_17210 20 0.42 Mlig455_055047

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_055047 {REF} {Length: 1907} {RNA1310_63298} {RNA815_53381}
33. MligTC455_30271 380 7.91 Mlig455_008670, Mlig455_010745, Mlig455_031996, Mlig455_033120, Mlig455_042255

Neo: -

Age: -

 0.956 - - 0.956 - - -

Mlig455_008670 {REF} {Length: 1094} {NoTransDecoderORF} {RNA1509_13206} {RNA1310_1311.2} {RNA815_19414}

Mlig455_010745 {REF} {Length: 118} {NoTransDecoderORF} {RNA1509_35750} {RNA1310_31492} {RNA815_11267}

Mlig455_031996 {REF} {Length: 313} {NoTransDecoderORF} {RNA1509_13206} {RNA1310_31492} {RNA815_11267}

Mlig455_033120 {REF} {Length: 154} {NoTransDecoderORF} {RNA1509_13206} {RNA1310_31492} {RNA815_11267}

Mlig455_042255 {REF} {Length: 517} {NoTransDecoderORF} {RNA1509_13206} {RNA1310_17473} {RNA815_11267}
34. MligTC455_47375 119 2.49 Mlig455_044978

Neo: -

Age: -

 WDR82 0.956 - - 0.956 - - - Mlig455_044978 {REF} {Length: 1214} {Pfam: Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=28.9]; WD domain, G-beta repeat [PF00400.34, score=27.0]} {Human: ENSG00000164091, WDR82, WD repeat domain 82, [Score=122, Expect=2e-33]} {Mouse: ENSMUSG00000020257, Wdr82, WD repeat domain containing 82, [Score=122, Expect=1e-33]} {Dmel: FBgn0032030, Wdr82, WD repeat domain 82, [Score=118, Expect=2e-32]} {Celegans: WBGene00016374, swd-2.2, Set1 WD40 repeat protein homolog, [Score=83.6, Expect=2e-19]} {Smed: dd_Smed_v6_3926_0_2, dd_Smed_v6_3926_0_2, [Score=85.5, Expect=2e-20]} {RNA1509_15991} {RNA1310_21239.1} {RNA815_37495}
35. MligTC455_47376 119 2.49 Mlig455_044991

Neo: -

Age: Up-Down-Up

 WDR82 0.956 - - 0.956 - - - Mlig455_044991 {REF} {Length: 1976} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=78.5]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=47.3]} {Human: ENSG00000164091, WDR82, WD repeat domain 82, [RH, Score=446, Expect=5e-158]} {Mouse: ENSMUSG00000020257, Wdr82, WD repeat domain containing 82, [RH, Score=446, Expect=3e-158]} {Dmel: FBgn0032030, Wdr82, WD repeat domain 82, [RH, Score=444, Expect=3e-157]} {Celegans: WBGene00016374, swd-2.2, Set1 WD40 repeat protein homolog, [RH, Score=276, Expect=3e-91]} {Smed: dd_Smed_v6_4830_0_1, dd_Smed_v6_4830_0_1, [RH, Score=361, Expect=2e-124]} {RNA1509_15991, RNA1509_54570} {RNA1310_21239.1, RNA1509_15991, RNA1509_54570} {RNA1509_15991, RNA1509_54570, RNA815_12038.1}
36. MligTC455_46952 43 0.9 Mlig455_031219

Neo: -

Age: -

Region-enriched R4: 5.444/0.03746

 0.955 - - 0.955 - - - Mlig455_031219 {REF} {Length: 735}
37. MligTC455_01800 93 1.93 Mlig455_052205

Neo: -

Age: -

 0.954 - - 0.954 - - - Mlig455_052205 {REF} {Length: 1282} {NoTransDecoderORF} {RNA1509_6341} {RNA1310_13441.1} {RNA815_5624}
38. MligTC455_13658 26 0.53 Mlig455_063501

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_063501 {REF} {Length: 1954} {RNA1310_18636.2} {RNA815_32755}
39. MligTC455_14198 156 3.24 Mlig455_029615, Mlig455_029616, Mlig455_061506, Mlig455_061509, Mlig455_070646

Neo: -

Age: Down-Up-Down

 0.953 - - 0.953 - - -

Mlig455_029615 {REF} {Length: 805} {NoTransDecoderORF} {RNA1310_104227}

Mlig455_029616 {REF} {Length: 323} {NoTransDecoderORF} {RNA1509_4937} {RNA1310_7268} {RNA815_25281}

Mlig455_061506 {REF} {Length: 309} {NoTransDecoderORF} {RNA1509_4937} {RNA1310_7268} {RNA815_25281}

Mlig455_061509 {REF} {Length: 460} {NoTransDecoderORF} {RNA1310_119917}

Mlig455_070646 {REF} {Length: 2408} {NoTransDecoderORF} {RNA1509_4937} {RNA1310_7268} {RNA815_25281}
40. MligTC455_39002 35 0.72 Mlig455_041561

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_041561 {REF} {Length: 743} {NoTransDecoderORF} {RNA1509_13203} {RNA1310_24973} {RNA815_7432}
41. MligTC455_07736 28 0.58 Mlig455_008920

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_008920 {REF} {Length: 531} {NoTransDecoderORF} {RNA1509_59553} {RNA1310_6578} {RNA815_48322}
42. MligTC455_31679 20 0.43 Mlig455_022701

Neo: -

Age: -

 PIF1 0.95 - - - - 0.950 - Mlig455_022701 {REF} {Length: 5983} {Pfam: PIF1-like helicase [PF05970.16, score=331.9]; Helitron helicase-like domain at N-terminus [PF14214.8, score=200.2]; AAA domain [PF13604.8, score=45.4]; Helicase [PF02689.16, score=23.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=19.6]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=90.1, Expect=2e-17]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=91.3, Expect=4e-18]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=89.0, Expect=2e-17]} {Celegans: WBGene00019136, F59H6.5, [RH, Score=800, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=106, Expect=3e-23]} {RNA1509_7410} {RNA1310_1350} {RNA815_358.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA