M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_10621

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_10621 34 0.70 Mlig455_016992

Neo: -

Age: -

 Mlig455_016992 {REF} {Length: 838} {NoTransDecoderORF}

Cumulative graph for MligTC455_10621

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.906 1.138 1.00000 1.00000
RegionR2 -0.641 1.138 0.82085 1.00000
RegionR3 0.757 1.138 0.52867 1.00000
RegionR4 3.256 1.138 0.06168 0.22234
RegionR5 -0.101 1.138 1.00000 1.00000
RegionR6 0.782 1.138 0.44558 1.00000
RegionR7 -1.74 1.138 1.00000 1.00000
RegionR8 -0.406 1.138 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.261 1.138 1.00000 1.00000
RegenerationR2 1.253 1.138 0.28019 0.72401
RegenerationR3 0.574 1.138 0.77568 0.97373
RegenerationR4 -1.755 1.138 0.28067 0.72572
RegenerationR5 2.952 1.138 0.04945 0.35896
RegenerationR6 0.167 1.138 0.99005 1.00000
RegenerationBL 2.571 1.138 0.26523 0.62365
RegenerationTP -0.255 1.138 0.80426 1.00000


Genes with expression patterns similar to MligTC455_10621

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_10621 34 0.7 Mlig455_016992

Neo: -

Age: -

 3 - - 1.000 - 1.000 1.000 Mlig455_016992 {REF} {Length: 838} {NoTransDecoderORF}
2. MligTC455_11953 5 0.1 Mlig455_001185

Neo: -

Age: -

 0.978 - - - - - 0.978 Mlig455_001185 {REF} {Length: 761}
3. MligTC455_51977 119 2.48 Mlig455_026762, Mlig455_051779

Neo: -

Age: Down-Up-Up

 HOXA1 0.978 - - 0.978 - - -

Mlig455_026762 {REF} {Length: 2041} {Pfam: Homeodomain [PF00046.31, score=79.1]} {Human: ENSG00000105991, HOXA1, homeobox A1, [RH, Score=116, Expect=4e-30]; ENSG00000120094, HOXB1, homeobox B1, [RH, Score=114, Expect=8e-30]; ENSG00000128645, HOXD1, homeobox D1, [RH, Score=111, Expect=2e-28]} {Mouse: ENSMUSG00000029844, Hoxa1, homeobox A1, [RH, Score=116, Expect=2e-30]; ENSMUSG00000042448, Hoxd1, homeobox D1, [RH, Score=113, Expect=4e-29]} {Dmel: FBgn0002522, lab, labial, [RH, Score=118, Expect=4e-30]} {Celegans: WBGene00000437, ceh-13, Homeobox protein ceh-13, [RH, Score=85.1, Expect=6e-20]} {Smed: dd_Smed_v6_62255_0_1, dd_Smed_v6_62255_0_1, [RH, Score=121, Expect=3e-34]} {RNA1310_35369} {RNA815_17610}

Mlig455_051779 {REF} {Length: 2283} {Pfam: Homeodomain [PF00046.31, score=80.2]} {Human: ENSG00000105991, HOXA1, homeobox A1, [RH, Score=118, Expect=7e-31]; ENSG00000120094, HOXB1, homeobox B1, [RH, Score=117, Expect=1e-30]; ENSG00000128645, HOXD1, homeobox D1, [RH, Score=114, Expect=3e-29]} {Mouse: ENSMUSG00000029844, Hoxa1, homeobox A1, [RH, Score=118, Expect=4e-31]; ENSMUSG00000018973, Hoxb1, homeobox B1, [RH, Score=116, Expect=1e-30]; ENSMUSG00000042448, Hoxd1, homeobox D1, [RH, Score=115, Expect=5e-30]} {Dmel: FBgn0002522, lab, labial, [RH, Score=120, Expect=8e-31]} {Celegans: WBGene00000437, ceh-13, Homeobox protein ceh-13, [RH, Score=83.6, Expect=2e-19]} {Smed: dd_Smed_v6_62255_0_1, dd_Smed_v6_62255_0_1, [RH, Score=122, Expect=6e-35]} {RNA1509_53134} {RNA1310_35369} {RNA815_17610}
4. MligTC455_30390 144 3 Mlig455_070663

Neo: -

Age: Up-Down-Down

 TRAF6 0.966 - - - - 0.966 - Mlig455_070663 {REF} {Length: 2869} {Pfam: TRAF-type zinc finger [PF02176.20, score=37.7]; WD domain, G-beta repeat [PF00400.34, score=19.6]} {Human: ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=92.8, Expect=5e-19]} {Mouse: ENSMUSG00000026942, Traf2, TNF receptor-associated factor 2, [Score=90.1, Expect=2e-18]; ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=89.7, Expect=4e-18]; ENSMUSG00000027164, Traf6, TNF receptor-associated factor 6, [Score=87.8, Expect=1e-17]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [Score=97.1, Expect=4e-21]} {RNA1509_41116} {RNA1310_9652.1, RNA1509_41116} {RNA1509_41116, RNA815_7741}
5. MligTC455_49220 49 1.01 Mlig455_035853

Neo: -

Age: -

 0.959 - - - - - 0.959 Mlig455_035853 {REF} {Length: 1375} {RNA1509_52052} {RNA1310_50539} {RNA815_453.2}
6. MligTC455_02524 47 0.98 Mlig455_070455

Neo: -

Age: -

Region-enriched R4: 4.766/0.04994

 0.955 - - - - 0.955 - Mlig455_070455 {REF} {Length: 1533} {Dmel: FBgn0014024, Rnp4F, RNA-binding protein 4F, [Score=49.7, Expect=6e-08]} {Celegans: WBGene00021821, Y54B9A.1, [Score=62.8, Expect=1e-13]} {RNA1509_57193} {RNA1310_84009} {RNA815_54861}
7. MligTC455_38119 5 0.11 Mlig455_069286

Neo: -

Age: logFC(26M/2M)=1.923

 0.953 - - - - - 0.953 Mlig455_069286 {REF} {Length: 503} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_41513} {RNA1310_24725.2} {RNA815_57959}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA