M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_10808

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_10808 20 0.42 Mlig455_016339

Neo: -

Age: -

 Mlig455_016339 {REF} {Length: 571} {NoTransDecoderORF} {RNA1310_52020.2} {RNA815_43280}

Cumulative graph for MligTC455_10808

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.038 0.721 1.00000 1.00000
RegionR2 -1.409 0.721 0.99989 1.00000
RegionR3 -0.09 0.721 0.99997 1.00000
RegionR4 1.607 0.721 0.99994 1.00000
RegionR5 0.552 0.721 0.99997 1.00000
RegionR6 -0.115 0.721 0.99999 1.00000
RegionR7 -0.329 0.721 1.00000 1.00000
RegionR8 -0.177 0.721 0.99999 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.194 0.721 1.00000 1.00000
RegenerationR2 3.224 0.721 0.05774 0.39531
RegenerationR3 2.846 0.721 0.22951 0.66425
RegenerationR4 -0.583 0.721 0.78852 0.98341
RegenerationR5 2.837 0.721 0.17587 0.60500
RegenerationR6 1.328 0.721 0.55782 0.84393
RegenerationBL -0.574 0.721 0.99998 1.00000
RegenerationTP 2.405 0.721 0.57297 0.94597


Genes with expression patterns similar to MligTC455_10808

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_10808 20 0.42 Mlig455_016339

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_016339 {REF} {Length: 571} {NoTransDecoderORF} {RNA1310_52020.2} {RNA815_43280}
2. MligTC455_16781 32 0.67 Mlig455_003020, Mlig455_003313

Neo: -

Age: -

 1.859 - - - 0.976 0.883 -

Mlig455_003020 {REF} {Length: 518} {Pfam: Immunoreceptor tyrosine-based activation motif [PF02189.17, score=26.8]} {RNA1310_57787} {RNA815_49158}

Mlig455_003313 {REF} {Length: 905} {Pfam: Immunoreceptor tyrosine-based activation motif [PF02189.17, score=74.4]} {RNA1310_57787} {RNA815_49158}
3. MligTC455_17850 65 1.35 Mlig455_002427

Neo: -

Age: -

 1.722 - - - 0.754 0.968 - Mlig455_002427 {REF} {Length: 474} {NoTransDecoderORF} {RNA1310_58520.2} {RNA815_36774}
4. MligTC455_18990 13 0.28 Mlig455_069976

Neo: -

Age: -

 SYN1 1.703 - - - 0.741 0.962 - Mlig455_069976 {REF} {Length: 2476} {Pfam: Synapsin, ATP binding domain [PF02750.16, score=235.0]; Synapsin, N-terminal domain [PF02078.18, score=137.7]} {Human: ENSG00000008056, SYN1, synapsin I, [RH, Score=324, Expect=2e-102]; ENSG00000157152, SYN2, synapsin II, [RH, Score=324, Expect=2e-103]; ENSG00000185666, SYN3, synapsin III, [RH, Score=322, Expect=9e-103]} {Mouse: ENSMUSG00000059602, Syn3, synapsin III, [RH, Score=327, Expect=5e-105]; ENSMUSG00000037217, Syn1, synapsin I, [RH, Score=324, Expect=9e-103]; ENSMUSG00000009394, Syn2, synapsin II, [RH, Score=323, Expect=9e-105]} {Dmel: FBgn0004575, Syn, Synapsin, [RH, Score=321, Expect=2e-98]} {Celegans: WBGene00004913, snn-1, SyNapsiN; Synapsin, [Score=163, Expect=6e-45]} {Smed: dd_Smed_v6_3135_0_1, dd_Smed_v6_3135_0_1, [RH, Score=387, Expect=3e-128]} {RNA1509_58931} {RNA1310_22468.1} {RNA815_2386}
5. MligTC455_05183 13 0.27 Mlig455_003637

Neo: -

Age: -

 0.98 - - - 0.980 - - Mlig455_003637 {REF} {Length: 906} {Pfam: PAN domain [PF00024.28, score=19.3]} {Smed: dd_Smed_v6_38541_0_1, dd_Smed_v6_38541_0_1, [Score=57.0, Expect=8e-10]} {RNA1310_45613} {RNA815_17816.1}
6. MligTC455_32232 9 0.19 Mlig455_041146, Mlig455_070069

Neo: -

Age: -

 KCNA1, KCNA2 0.98 - - - - 0.980 -

Mlig455_041146 {REF} {Length: 2621} {Pfam: Ion transport protein [PF00520.33, score=142.2]; BTB/POZ domain [PF02214.24, score=79.6]; Ion channel [PF07885.18, score=52.7]} {Human: ENSG00000111262, KCNA1, potassium voltage-gated channel subfamily A member 1, [Score=385, Expect=1e-128]; ENSG00000177301, KCNA2, potassium voltage-gated channel subfamily A member 2, [Score=385, Expect=3e-128]; ENSG00000182255, KCNA4, potassium voltage-gated channel subfamily A member 4, [Score=372, Expect=3e-121]; ENSG00000177272, KCNA3, potassium voltage-gated channel subfamily A member 3, [Score=371, Expect=7e-122]} {Mouse: ENSMUSG00000040724, Kcna2, potassium voltage-gated channel, shaker-related subfamily, member 2, [Score=385, Expect=1e-128]; ENSMUSG00000047976, Kcna1, potassium voltage-gated channel, shaker-related subfamily, member 1, [Score=385, Expect=1e-128]; ENSMUSG00000042604, Kcna4, potassium voltage-gated channel, shaker-related subfamily, member 4, [Score=372, Expect=3e-121]; ENSMUSG00000047959, Kcna3, potassium voltage-gated channel, shaker-related subfamily, member 3, [Score=371, Expect=1e-122]} {Dmel: FBgn0003380, Sh, Shaker, [Score=393, Expect=7e-130]} {Celegans: WBGene00014261, shk-1, Potassium voltage-gated channel protein shk-1, [Score=281, Expect=2e-89]} {Smed: dd_Smed_v6_15133_0_1, dd_Smed_v6_15133_0_1, [RH, Score=549, Expect=0.0]} {RNA1509_46497} {RNA1310_11183} {RNA815_45289}

Mlig455_070069 {REF} {Length: 2734} {Pfam: Ion transport protein [PF00520.33, score=142.2]; BTB/POZ domain [PF02214.24, score=79.6]; Ion channel [PF07885.18, score=52.7]} {Human: ENSG00000177301, KCNA2, potassium voltage-gated channel subfamily A member 2, [Score=385, Expect=3e-128]; ENSG00000111262, KCNA1, potassium voltage-gated channel subfamily A member 1, [Score=385, Expect=1e-128]; ENSG00000182255, KCNA4, potassium voltage-gated channel subfamily A member 4, [Score=372, Expect=3e-121]; ENSG00000177272, KCNA3, potassium voltage-gated channel subfamily A member 3, [Score=371, Expect=8e-122]} {Mouse: ENSMUSG00000047976, Kcna1, potassium voltage-gated channel, shaker-related subfamily, member 1, [Score=385, Expect=1e-128]; ENSMUSG00000040724, Kcna2, potassium voltage-gated channel, shaker-related subfamily, member 2, [Score=385, Expect=1e-128]; ENSMUSG00000042604, Kcna4, potassium voltage-gated channel, shaker-related subfamily, member 4, [Score=371, Expect=3e-121]; ENSMUSG00000047959, Kcna3, potassium voltage-gated channel, shaker-related subfamily, member 3, [Score=371, Expect=1e-122]; ENSMUSG00000045534, Kcna5, potassium voltage-gated channel, shaker-related subfamily, member 5, [Score=366, Expect=1e-119]} {Dmel: FBgn0003380, Sh, Shaker, [Score=394, Expect=3e-130]} {Celegans: WBGene00014261, shk-1, Potassium voltage-gated channel protein shk-1, [Score=281, Expect=2e-89]} {Smed: dd_Smed_v6_15133_0_1, dd_Smed_v6_15133_0_1, [RH, Score=549, Expect=0.0]} {RNA1509_46497} {RNA1310_11183} {RNA815_45289}
7. MligTC455_51123 37 0.77 Mlig455_059507

Neo: -

Age: -

 0.979 - - - 0.979 - - Mlig455_059507 {REF} {Length: 970} {RNA1310_88282}
8. MligTC455_10036 45 0.93 Mlig455_058001

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_058001 {REF} {Length: 634} {RNA1509_10017} {RNA1310_7841} {RNA815_6732.2}
9. MligTC455_15790 6 0.13 Mlig455_061100

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_061100 {REF} {Length: 1129} {RNA1310_71184}
10. MligTC455_11389 9 0.19 Mlig455_029122

Neo: -

Age: -

 ASIC5 0.976 - - - - 0.976 - Mlig455_029122 {REF} {Length: 1921} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=227.5]} {Human: ENSG00000256394, ASIC5, acid sensing ion channel subunit family member 5, [Score=72.4, Expect=1e-12]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=84.3, Expect=8e-17]} {Celegans: WBGene00022815, asic-1, Degenerin-like protein asic-1, [Score=88.2, Expect=6e-18]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=143, Expect=6e-36]} {RNA1310_42486} {RNA815_46419}
11. MligTC455_14122 5 0.1 Mlig455_031051

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-1.713

 SSPO 0.975 - - - - 0.975 - Mlig455_031051 {REF} {Length: 7967} {Pfam: von Willebrand factor type D domain [PF00094.27, score=90.8]; Low-density lipoprotein receptor domain class A [PF00057.20, score=75.6]; C8 domain [PF08742.13, score=55.5]; Domain of Unknown Function (DUF1081) [PF06448.13, score=38.9]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=34.6]} {Human: ENSG00000197558, SSPO, SCO-spondin, [Score=302, Expect=3e-81]} {Mouse: ENSMUSG00000029797, Sspo, SCO-spondin, [Score=297, Expect=6e-80]} {Dmel: FBgn0029167, Hml, Hemolectin, [Score=174, Expect=1e-42]} {Celegans: WBGene00020481, T13C2.6, [Score=107, Expect=7e-23]} {Smed: dd_Smed_v6_9342_0_1, dd_Smed_v6_9342_0_1, [Score=530, Expect=2e-155]} {RNA1509_11979} {RNA1310_598} {RNA815_1331}
12. MligTC455_07653 93 1.94 Mlig455_005690

Neo: -

Age: -

Region-enriched R4: 3.056/0.03657

 0.974 - - - - 0.974 - Mlig455_005690 {REF} {Length: 747} {NoTransDecoderORF} {RNA1509_20118} {RNA1310_60500} {RNA815_43456}
13. MligTC455_47401 7 0.15 Mlig455_026016

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_026016 {REF} {Length: 1087} {RNA1310_29382} {RNA815_57261}
14. MligTC455_48519 4 0.08 Mlig455_037273

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_037273 {REF} {Length: 1443} {RNA1509_50708} {RNA1310_13399} {RNA815_37930}
15. MligTC455_00559 9 0.18 Mlig455_021986

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_021986 {REF} {Length: 21} {NoTransDecoderORF}
16. MligTC455_42025 17 0.36 Mlig455_006557, Mlig455_006670

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.911

 CHRM3, HRH1 0.97 - - - - 0.970 -

Mlig455_006557 {REF} {Length: 2091} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=215.6]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=23.5]} {Human: ENSG00000196639, HRH1, histamine receptor H1, [Score=216, Expect=3e-64]} {Mouse: ENSMUSG00000053004, Hrh1, histamine receptor H1, [Score=216, Expect=2e-64]} {Dmel: FBgn0263116, 5-HT1B, 5-hydroxytryptamine (serotonin) receptor 1B, [Score=142, Expect=2e-36]} {Celegans: WBGene00016872, dop-4, Dopamine receptor 4, [Score=156, Expect=2e-42]} {Smed: dd_Smed_v6_20043_0_1, dd_Smed_v6_20043_0_1, [Score=155, Expect=8e-42]} {RNA1310_46689} {RNA815_30833}

Mlig455_006670 {REF} {Length: 2649} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=215.7]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=23.5]} {Human: ENSG00000133019, CHRM3, cholinergic receptor muscarinic 3, [Score=177, Expect=4e-49]} {Mouse: ENSMUSG00000053004, Hrh1, histamine receptor H1, [Score=215, Expect=3e-64]} {Dmel: FBgn0038653, CG18208, [Score=150, Expect=2e-39]} {Celegans: WBGene00016872, dop-4, Dopamine receptor 4, [Score=157, Expect=1e-42]} {Smed: dd_Smed_v6_20043_0_1, dd_Smed_v6_20043_0_1, [Score=155, Expect=5e-42]} {RNA1310_46689} {RNA815_30833}
17. MligTC455_49887 95 1.97 Mlig455_011963

Neo: -

Age: -

 ATP2B3 0.969 - - - 0.969 - - Mlig455_011963 {REF} {Length: 5673} {Pfam: Cation transporting ATPase, C-terminus [PF00689.23, score=146.5]; E1-E2 ATPase [PF00122.22, score=103.7]; Cation transport ATPase (P-type) [PF13246.8, score=66.6]; haloacid dehalogenase-like hydrolase [PF00702.28, score=55.9]; Cation transporter/ATPase, N-terminus [PF00690.28, score=52.4]; Plasma membrane calcium transporter ATPase C terminal [PF12424.10, score=44.8]; haloacid dehalogenase-like hydrolase [PF08282.14, score=27.6]} {Human: ENSG00000067842, ATP2B3, ATPase plasma membrane Ca2+ transporting 3, [RH, Score=1259, Expect=0.0]; ENSG00000157087, ATP2B2, ATPase plasma membrane Ca2+ transporting 2, [RH, Score=1250, Expect=0.0]; ENSG00000070961, ATP2B1, ATPase plasma membrane Ca2+ transporting 1, [RH, Score=1204, Expect=0.0]} {Mouse: ENSMUSG00000031376, Atp2b3, ATPase, Ca++ transporting, plasma membrane 3, [RH, Score=1256, Expect=0.0]; ENSMUSG00000030302, Atp2b2, ATPase, Ca++ transporting, plasma membrane 2, [RH, Score=1248, Expect=0.0]; ENSMUSG00000019943, Atp2b1, ATPase, Ca++ transporting, plasma membrane 1, [RH, Score=1217, Expect=0.0]} {Dmel: FBgn0259214, PMCA, plasma membrane calcium ATPase, [RH, Score=1264, Expect=0.0]} {Celegans: WBGene00003153, mca-3, Calcium-transporting ATPase, [RH, Score=1229, Expect=0.0]} {Smed: dd_Smed_v6_4145_0_1, dd_Smed_v6_4145_0_1, [RH, Score=1320, Expect=0.0]} {RNA1509_40447} {RNA1310_2050.1} {RNA815_10457}
18. MligTC455_36130 19 0.4 Mlig455_069661

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_069661 {REF} {Length: 1790} {RNA1509_50856} {RNA1310_25342} {RNA815_17330}
19. MligTC455_50026 11 0.23 Mlig455_040800

Neo: -

Age: -

 SIDT1 0.968 - - - - 0.968 - Mlig455_040800 {REF} {Length: 3056} {Pfam: dsRNA-gated channel SID-1 [PF13965.8, score=567.3]} {Human: ENSG00000072858, SIDT1, SID1 transmembrane family member 1, [Score=486, Expect=1e-160]} {Mouse: ENSMUSG00000022696, Sidt1, SID1 transmembrane family, member 1, [Score=352, Expect=1e-109]; ENSMUSG00000034908, Sidt2, SID1 transmembrane family, member 2, [Score=342, Expect=9e-106]} {Celegans: WBGene00006477, chup-1, CHolesterol UPtake associated, [RH, Score=338, Expect=3e-105]} {Smed: dd_Smed_v6_6063_0_2, dd_Smed_v6_6063_0_2, [Score=413, Expect=2e-133]} {RNA1509_16281} {RNA1310_78145} {RNA815_1619.1}
20. MligTC455_10947 15 0.31 Mlig455_050032

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_050032 {REF} {Length: 309} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_46344} {RNA1310_4333.2} {RNA815_13389}
21. MligTC455_41874 41 0.85 Mlig455_052428

Neo: Int S/G2/M

Age: Up-Down-Up

 CBFB 0.967 - - - 0.967 - - Mlig455_052428 {REF} {Length: 2121} {Pfam: Core binding factor beta subunit [PF02312.19, score=118.4]} {Human: ENSG00000067955, CBFB, core-binding factor subunit beta, [Score=53.1, Expect=1e-07]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [RH, Score=96.7, Expect=3e-21]} {Dmel: FBgn0013755, Bro, Brother, [Score=60.1, Expect=4e-10]} {Celegans: WBGene00008559, F07H5.8, [Score=50.4, Expect=2e-06]} {Smed: dd_Smed_v6_2875_0_2, dd_Smed_v6_2875_0_2, [Score=57.8, Expect=1e-10]} {RNA1310_39433} {RNA815_32396}
22. MligTC455_02244 25 0.53 Mlig455_026007, Mlig455_070432

Neo: -

Age: -

 0.966 - - - 0.966 - -

Mlig455_026007 {REF} {Length: 604} {Smed: dd_Smed_v6_3944_0_1, dd_Smed_v6_3944_0_1, [Score=91.3, Expect=3e-24]} {RNA1310_143494}

Mlig455_070432 {REF} {Length: 1561} {Dmel: FBgn0050419, CG30419, [RH, Score=61.6, Expect=1e-11]} {Smed: dd_Smed_v6_3944_0_1, dd_Smed_v6_3944_0_1, [RH, Score=112, Expect=2e-32]} {RNA1310_143494}
23. MligTC455_10599 140 2.91 Mlig455_000565, Mlig455_030365, Mlig455_030412

Neo: -

Age: logFC(26M/2M)=-0.762

 GRIK3 0.961 - - - - 0.961 -

Mlig455_000565 {REF} {Length: 2846} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=72.0]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=56.1]; Ligand-gated ion channel [PF00060.28, score=44.5]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=145, Expect=3e-35]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=142, Expect=3e-34]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=141, Expect=5e-34]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=139, Expect=3e-33]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=144, Expect=5e-35]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=143, Expect=1e-34]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=140, Expect=9e-34]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=139, Expect=2e-33]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=138, Expect=5e-33]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=138, Expect=4e-33]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=130, Expect=1e-30]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=135, Expect=3e-32]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=154, Expect=2e-38]} {RNA1509_59839} {RNA1310_4586} {RNA815_2154.1}

Mlig455_030365 {REF} {Length: 2765} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=72.6]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=57.7]; Ligand-gated ion channel [PF00060.28, score=43.6]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=144, Expect=6e-35]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=140, Expect=2e-33]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=138, Expect=7e-33]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=138, Expect=7e-33]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=137, Expect=2e-32]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=142, Expect=2e-34]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=142, Expect=2e-34]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=138, Expect=4e-33]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=136, Expect=2e-32]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=136, Expect=2e-32]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=130, Expect=6e-31]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=131, Expect=3e-31]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=155, Expect=7e-39]} {RNA1509_59839} {RNA1310_4586} {RNA815_2154.1}

Mlig455_030412 {REF} {Length: 2615} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=72.2]; Ligand-gated ion channel [PF00060.28, score=45.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=36.1]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=125, Expect=6e-29]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=122, Expect=6e-28]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=121, Expect=1e-27]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=125, Expect=4e-29]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=124, Expect=6e-29]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=120, Expect=2e-27]} {Dmel: FBgn0026255, clumsy, [Score=117, Expect=9e-27]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=117, Expect=7e-27]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=135, Expect=1e-32]} {RNA1509_59839} {RNA1310_4586} {RNA815_2154.1}
24. MligTC455_13845 25 0.52 Mlig455_030364, Mlig455_030411

Neo: -

Age: -

 GRIK1, GRIK3 0.961 - - - - 0.961 -

Mlig455_030364 {REF} {Length: 5127} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=78.2]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=56.4]; Ligand-gated ion channel [PF00060.28, score=42.3]} {Human: ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=150, Expect=1e-36]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=148, Expect=4e-36]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=147, Expect=9e-36]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=146, Expect=1e-35]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=146, Expect=1e-35]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=150, Expect=8e-37]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=148, Expect=4e-36]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=147, Expect=5e-36]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=147, Expect=5e-36]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=146, Expect=1e-35]} {Dmel: FBgn0038837, CG3822, [Score=150, Expect=6e-37]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=129, Expect=2e-30]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=171, Expect=1e-43]} {RNA1509_59839} {RNA1310_10552} {RNA815_2154.1}

Mlig455_030411 {REF} {Length: 1792} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=78.4]; Ligand-gated ion channel [PF00060.28, score=42.7]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=35.7]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=132, Expect=2e-31]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=126, Expect=2e-29]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=132, Expect=2e-31]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=127, Expect=5e-30]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=126, Expect=1e-29]} {Dmel: FBgn0038837, CG3822, [Score=122, Expect=1e-28]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=115, Expect=2e-26]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=137, Expect=2e-33]} {RNA1509_59839} {RNA1310_10552} {RNA815_46189}
25. MligTC455_11758 6 0.12 Mlig455_051325

Neo: -

Age: -

 ZNRF3 0.96 - - - - 0.960 - Mlig455_051325 {REF} {Length: 2005} {Pfam: Ring finger domain [PF13639.8, score=47.1]; RING-like zinc finger [PF17123.7, score=44.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=34.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.0]; RING-H2 zinc finger domain [PF12678.9, score=28.8]; zinc-RING finger domain [PF14634.8, score=25.0]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=24.1]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=21.4]; RING-type zinc-finger [PF13445.8, score=20.9]; ZNRF-3 Ectodomain [PF18212.3, score=20.6]} {Human: ENSG00000183579, ZNRF3, zinc and ring finger 3, [Score=91.3, Expect=2e-19]} {Mouse: ENSMUSG00000041961, Znrf3, zinc and ring finger 3, [Score=92.0, Expect=9e-20]} {Dmel: FBgn0052850, CG32850, [Score=60.8, Expect=5e-11]} {Celegans: WBGene00023404, plr-1, Probable E3 ubiquitin-protein ligase plr-1, [RH, Score=68.2, Expect=2e-12]} {Smed: dd_Smed_v6_2844_0_1, dd_Smed_v6_2844_0_1, [Score=70.9, Expect=1e-13]} {RNA1509_33706} {RNA1310_73291} {RNA815_59739}
26. MligTC455_29516 38 0.8 Mlig455_029373

Neo: -

Age: Up-Down-Up

 GRIA2 0.96 - - - 0.960 - - Mlig455_029373 {REF} {Length: 3044} {Pfam: Ligand-gated ion channel [PF00060.28, score=103.3]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=63.2]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=23.4]} {Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=158, Expect=3e-39]; ENSG00000182771, GRID1, glutamate ionotropic receptor delta type subunit 1, [Score=158, Expect=3e-39]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=157, Expect=5e-39]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=155, Expect=2e-38]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=155, Expect=3e-38]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=154, Expect=1e-37]; ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=153, Expect=1e-37]} {Mouse: ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=159, Expect=2e-39]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=158, Expect=2e-39]; ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=155, Expect=2e-38]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=155, Expect=1e-38]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=153, Expect=1e-37]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=152, Expect=1e-37]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=152, Expect=3e-37]; ENSMUSG00000041078, Grid1, glutamate receptor, ionotropic, delta 1, [Score=152, Expect=3e-37]} {Dmel: FBgn0038837, CG3822, [Score=151, Expect=3e-37]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=139, Expect=1e-33]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=241, Expect=1e-71]} {RNA1310_63010} {RNA815_33834}
27. MligTC455_38524 4 0.09 Mlig455_047855

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_047855 {REF} {Length: 3129} {RNA1310_22427} {RNA815_13338}
28. MligTC455_36153 63 1.31 Mlig455_068201

Neo: -

Age: Up-Down-Down

 ZFYVE9 0.958 - - - 0.958 - - Mlig455_068201 {REF} {Length: 2852} {Pfam: Domain of unknown function (DUF3480) [PF11979.10, score=106.6]} {Human: ENSG00000157077, ZFYVE9, zinc finger FYVE-type containing 9, [Score=132, Expect=5e-32]} {Mouse: ENSMUSG00000034557, Zfyve9, zinc finger, FYVE domain containing 9, [Score=134, Expect=7e-33]} {Dmel: FBgn0026369, Sara, Smad anchor for receptor activation, [Score=122, Expect=6e-29]} {Celegans: WBGene00000101, aka-1, A Kinase Anchor protein; A kinase anchor protein, [Score=50.1, Expect=3e-06]} {Smed: dd_Smed_v6_8098_0_1, dd_Smed_v6_8098_0_1, [Score=82.4, Expect=2e-16]} {RNA1509_39700} {RNA1310_6234.1} {RNA815_2939.1}
29. MligTC455_42648 99 2.06 Mlig455_044446

Neo: -

Age: Down-Up-Down

 MEIS1 0.958 - - - - 0.958 - Mlig455_044446 {REF} {Length: 3616} {Pfam: N-terminal of Homeobox Meis and PKNOX1 [PF16493.7, score=134.9]; Homeobox KN domain [PF05920.13, score=71.0]; Homeodomain [PF00046.31, score=32.6]} {Human: ENSG00000143995, MEIS1, Meis homeobox 1, [RH, Score=191, Expect=3e-53]; ENSG00000134138, MEIS2, Meis homeobox 2, [RH, Score=191, Expect=3e-53]} {Mouse: ENSMUSG00000027210, Meis2, Meis homeobox 2, [RH, Score=191, Expect=3e-53]; ENSMUSG00000020160, Meis1, Meis homeobox 1, [RH, Score=191, Expect=3e-53]} {Dmel: FBgn0001235, hth, homothorax, [Score=176, Expect=2e-50]} {Celegans: WBGene00006796, unc-62, Homeobox protein unc-62, [RH, Score=170, Expect=2e-45]} {Smed: dd_Smed_v6_6114_0_2, dd_Smed_v6_6114_0_2, [RH, Score=226, Expect=9e-66]} {RNA1509_22853} {RNA1310_27014, RNA1509_22853} {RNA1509_22853, RNA815_28484}
30. MligTC455_33983 103 2.15 Mlig455_013705, Mlig455_013722, Mlig455_013724

Neo: -

Age: -

Region-enriched R4: 10.836/0.00000
Region-enriched R5: 3.705/0.04439

 0.957 - - - - 0.957 -

Mlig455_013705 {REF} {Length: 1120} {RNA1310_17183} {RNA815_21186}

Mlig455_013722 {REF} {Length: 2283} {RNA1310_17183} {RNA815_21186}

Mlig455_013724 {REF} {Length: 1641} {RNA1310_17183} {RNA815_21186}
31. MligTC455_37805 538 11.21 Mlig455_023154, Mlig455_023305

Neo: -

Age: Down-Up-Down

Region-enriched R3: 4.602/0.00000

 TRPM3 0.957 - - - 0.957 - -

Mlig455_023154 {REF} {Length: 1152} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=28.1]; Ankyrin repeats (3 copies) [PF12796.9, score=24.2]; Ankyrin repeats (many copies) [PF13857.8, score=24.1]} {RNA1509_20239} {RNA1310_2354} {RNA815_15927}

Mlig455_023305 {REF} {Length: 6732} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=101.6]; Ankyrin repeats (many copies) [PF13637.8, score=81.7]; Ankyrin repeats (many copies) [PF13857.8, score=54.3]; Ankyrin repeat [PF13606.8, score=51.8]; Ankyrin repeat [PF00023.32, score=33.5]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=58.2, Expect=2e-07]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=56.6, Expect=5e-07]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=56.2, Expect=5e-07]; ENSG00000135299, ANKRD6, ankyrin repeat domain 6, [Score=56.2, Expect=2e-07]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=58.9, Expect=7e-08]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=58.2, Expect=1e-07]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=59.7, Expect=3e-08]} {Celegans: WBGene00013835, mlt-4, Molting protein MLT-4, [Score=58.2, Expect=4e-08]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=93.2, Expect=7e-19]} {RNA1509_20239} {RNA1310_2354} {RNA815_15927}
32. MligTC455_41375 44 0.92 Mlig455_000822

Neo: -

Age: Up-Down-Up

Region-enriched R2: 3.834/0.04522
Region-enriched R7: 3.684/0.02449

 EGR1 0.956 - - - - 0.956 - Mlig455_000822 {REF} {Length: 4199} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=52.7]; Zinc-finger double domain [PF13465.8, score=52.2]; C2H2-type zinc finger [PF13894.8, score=38.9]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=24.3]; C2H2-type zinc finger [PF13912.8, score=22.1]} {Human: ENSG00000120738, EGR1, early growth response 1, [Score=158, Expect=5e-43]; ENSG00000179388, EGR3, early growth response 3, [Score=154, Expect=2e-42]; ENSG00000122877, EGR2, early growth response 2, [Score=151, Expect=7e-41]} {Mouse: ENSMUSG00000038418, Egr1, early growth response 1, [Score=158, Expect=4e-43]; ENSMUSG00000033730, Egr3, early growth response 3, [Score=154, Expect=1e-42]; ENSMUSG00000116458, Egr2, early growth response 2, [Score=152, Expect=3e-41]; ENSMUSG00000037868, Egr2, early growth response 2, [Score=152, Expect=3e-41]} {Dmel: FBgn0003499, sr, stripe, [Score=158, Expect=3e-42]} {Celegans: WBGene00007772, egrh-1, EGR (Early Growth factor Response factor) Homolog, [Score=144, Expect=8e-39]} {Smed: dd_Smed_v6_7091_0_1, dd_Smed_v6_7091_0_1, [Score=132, Expect=1e-34]} {RNA1310_52919} {RNA815_42057}
33. MligTC455_04609 25 0.52 Mlig455_012981

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_012981 {REF} {Length: 1755}
34. MligTC455_38720 72 1.5 Mlig455_065562

Neo: -

Age: Up-Down-Down

 COL4A6 0.955 - - - - - 0.955 Mlig455_065562 {REF} {Length: 6263} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=613.8]; C-terminal tandem repeated domain in type 4 procollagen [PF01413.21, score=202.1]} {Human: ENSG00000197565, COL4A6, collagen type IV alpha 6 chain, [Score=502, Expect=6e-149]} {Mouse: ENSMUSG00000031273, Col4a6, collagen, type IV, alpha 6, [Score=514, Expect=3e-153]; ENSMUSG00000116510, Col4a6, collagen, type IV, alpha 6, [Score=514, Expect=3e-153]} {Dmel: FBgn0016075, vkg, viking, [Score=596, Expect=0.0]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [Score=583, Expect=1e-177]} {Smed: dd_Smed_v6_2337_0_1, dd_Smed_v6_2337_0_1, [Score=738, Expect=0.0]} {RNA1509_23572, RNA1509_35895, RNA1509_45361, RNA1509_5346} {RNA1310_692.1, RNA1509_23572, RNA1509_35895, RNA1509_45361} {RNA1509_23572, RNA1509_35895, RNA1509_45361, RNA815_573}
35. MligTC455_24907 223 4.65 Mlig455_030279, Mlig455_057569

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=-0.855

Region-enriched R3: 3.478/0.00051

 0.952 - - - 0.952 - -

Mlig455_030279 {REF} {Length: 1440} {RNA1310_18429.2} {RNA815_17761}

Mlig455_057569 {REF} {Length: 749} {RNA1310_18429.2} {RNA815_17761}
36. MligTC455_37702 80 1.67 Mlig455_019499, Mlig455_044124, Mlig455_052495, Mlig455_066904

Neo: -

Age: Up-Down-Up

 AGRN 0.952 - - - 0.952 - -

Mlig455_019499 {REF} {Length: 3519} {Pfam: Laminin G domain [PF02210.26, score=157.1]; Laminin G domain [PF00054.25, score=153.3]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=33.9]; EGF-like domain [PF00008.29, score=32.9]} {Human: ENSG00000188157, AGRN, agrin, [RH, Score=170, Expect=8e-43]} {Mouse: ENSMUSG00000041936, Agrn, agrin, [RH, Score=170, Expect=6e-43]} {Dmel: FBgn0034070, SP2353, [RH, Score=206, Expect=1e-54]} {Celegans: WBGene00001328, epi-1, Laminin-like protein epi-1, [Score=55.8, Expect=1e-07]} {Smed: dd_Smed_v6_10946_0_2, dd_Smed_v6_10946_0_2, [RH, Score=274, Expect=5e-80]} {RNA1310_74942} {RNA815_40361}

Mlig455_044124 {REF} {Length: 914} {RNA1310_41563}

Mlig455_052495 {REF} {Length: 1397} {Pfam: THAP domain [PF05485.14, score=29.4]} {RNA1310_37069.2} {RNA815_27767}

Mlig455_066904 {REF} {Length: 4733} {Pfam: Laminin G domain [PF02210.26, score=157.1]; Laminin G domain [PF00054.25, score=153.3]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=33.9]; EGF-like domain [PF00008.29, score=32.9]} {Human: ENSG00000188157, AGRN, agrin, [RH, Score=170, Expect=8e-43]} {Mouse: ENSMUSG00000041936, Agrn, agrin, [RH, Score=170, Expect=6e-43]} {Dmel: FBgn0034070, SP2353, [RH, Score=206, Expect=1e-54]} {Celegans: WBGene00001328, epi-1, Laminin-like protein epi-1, [Score=55.8, Expect=1e-07]} {Smed: dd_Smed_v6_10946_0_2, dd_Smed_v6_10946_0_2, [RH, Score=274, Expect=5e-80]} {RNA1310_74942} {RNA815_40361}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA