M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_11056

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_11056 182 3.79 Mlig455_021176

Neo: -

Age: Down-Up-Down

 Mlig455_021176 {REF} {Length: 2022} {TRANSSPLICED} {RNA1509_23663} {RNA1310_23883, RNA1509_23663} {RNA1509_23663, RNA815_16092}

Cumulative graph for MligTC455_11056

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.256 2.459 0.87955 1.00000
RegionR2 0.448 2.459 0.59010 0.94380
RegionR3 -0.091 2.459 0.89012 1.00000
RegionR4 -0.534 2.459 0.48102 0.80865
RegionR5 1.225 2.459 0.01449 0.07621
RegionR6 0.159 2.459 0.80313 1.00000
RegionR7 -0.37 2.459 0.66027 1.00000
RegionR8 -0.581 2.459 0.58642 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.553 2.459 0.43306 1.00000
RegenerationR2 0.315 2.459 0.64167 0.93203
RegenerationR3 -0.158 2.459 0.82900 0.99040
RegenerationR4 0.134 2.459 0.86475 1.00000
RegenerationR5 -0.297 2.459 0.65043 0.93263
RegenerationR6 -0.29 2.459 0.73439 0.94376
RegenerationBL 0.194 2.459 0.86724 1.00000
RegenerationTP 1.271 2.459 0.19168 0.63010


Genes with expression patterns similar to MligTC455_11056

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11056 182 3.79 Mlig455_021176

Neo: -

Age: Down-Up-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_021176 {REF} {Length: 2022} {TRANSSPLICED} {RNA1509_23663} {RNA1310_23883, RNA1509_23663} {RNA1509_23663, RNA815_16092}
2. MligTC455_33189 347 7.24 Mlig455_041066, Mlig455_064709

Neo: -

Age: -

 LRRC7 2.543 - - - 0.827 0.743 0.973

Mlig455_041066 {REF} {Length: 3640} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=117.5]; Leucine Rich repeats (2 copies) [PF12799.9, score=92.1]; PDZ domain [PF00595.26, score=34.0]; PDZ domain [PF17820.3, score=28.3]; PDZ domain [PF13180.8, score=27.0]} {Human: ENSG00000033122, LRRC7, leucine rich repeat containing 7, [Score=286, Expect=9e-80]; ENSG00000112851, ERBIN, erbb2 interacting protein, [Score=272, Expect=2e-75]} {Mouse: ENSMUSG00000028176, Lrrc7, leucine rich repeat containing 7, [Score=286, Expect=3e-80]} {Dmel: FBgn0263289, scrib, scribbled, [Score=280, Expect=5e-78]} {Celegans: WBGene00002632, let-413, [Score=238, Expect=6e-67]} {Smed: dd_Smed_v6_4770_0_1, dd_Smed_v6_4770_0_1, [Score=265, Expect=2e-74]} {RNA1509_49092} {RNA1310_13850.1} {RNA815_4016}

Mlig455_064709 {REF} {Length: 3782} {TRANSSPLICED} {Pfam: Leucine rich repeat [PF13855.8, score=119.4]; Leucine Rich repeats (2 copies) [PF12799.9, score=92.2]; PDZ domain [PF00595.26, score=34.3]; PDZ domain [PF17820.3, score=28.2]; PDZ domain [PF13180.8, score=26.8]} {Human: ENSG00000033122, LRRC7, leucine rich repeat containing 7, [Score=280, Expect=6e-78]; ENSG00000112851, ERBIN, erbb2 interacting protein, [Score=273, Expect=1e-75]} {Mouse: ENSMUSG00000028176, Lrrc7, leucine rich repeat containing 7, [Score=281, Expect=3e-78]; ENSMUSG00000021709, Erbin, Erbb2 interacting protein, [Score=268, Expect=5e-74]} {Dmel: FBgn0263289, scrib, scribbled, [Score=276, Expect=1e-76]} {Celegans: WBGene00002632, let-413, [Score=236, Expect=2e-66]} {Smed: dd_Smed_v6_4770_0_1, dd_Smed_v6_4770_0_1, [Score=261, Expect=4e-73]} {RNA1509_49092} {RNA1310_13850.1, RNA1509_49092} {RNA1509_49092, RNA815_4016}
3. MligTC455_39915 127 2.65 Mlig455_002965

Neo: -

Age: Up-Down-Up

 HSPB1 2.482 - - 0.711 0.959 - 0.812 Mlig455_002965 {REF} {Length: 2866} {Pfam: Hsp20/alpha crystallin family [PF00011.23, score=48.1]} {Human: ENSG00000106211, HSPB1, heat shock protein family B (small) member 1, [RH, Score=53.1, Expect=1e-07]; ENSG00000152137, HSPB8, heat shock protein family B (small) member 8, [RH, Score=53.1, Expect=1e-07]} {Mouse: ENSMUSG00000041548, Hspb8, heat shock protein 8, [RH, Score=53.1, Expect=8e-08]} {Celegans: WBGene00002023, hsp-25, Heat Shock Protein, [RH, Score=70.1, Expect=9e-14]} {Smed: dd_Smed_v6_15128_0_2, dd_Smed_v6_15128_0_2, [Score=82.0, Expect=2e-17]} {RNA1509_23358} {RNA1310_19444} {RNA815_29507}
4. MligTC455_31754 184 3.83 Mlig455_009000

Neo: -

Age: Up-Down-Up

 ATP6V1E1 1.733 - - - 0.954 - 0.779 Mlig455_009000 {REF} {Length: 2323} {TRANSSPLICED} {Pfam: ATP synthase (E/31 kDa) subunit [PF01991.20, score=147.7]} {Human: ENSG00000131100, ATP6V1E1, ATPase H+ transporting V1 subunit E1, [Score=199, Expect=1e-64]} {Mouse: ENSMUSG00000019210, Atp6v1e1, ATPase, H+ transporting, lysosomal V1 subunit E1, [Score=197, Expect=5e-64]} {Dmel: FBgn0283535, Vha26, Vacuolar H[+]-ATPase 26kD subunit, [Score=202, Expect=8e-66]} {Celegans: WBGene00006917, vha-8, Vacuolar H ATPase, [Score=203, Expect=2e-66]} {Smed: dd_Smed_v6_1369_0_1, dd_Smed_v6_1369_0_1, [Score=176, Expect=7e-56]} {RNA1509_51032, RNA1509_51700} {RNA1310_40144, RNA1509_51032, RNA1509_51700} {RNA1509_51032, RNA1509_51700, RNA815_17454}
5. MligTC455_49936 134 2.79 Mlig455_025477, Mlig455_033596

Neo: -

Age: Down-Up-Down

Region-enriched R3: 2.907/0.03091

 1.718 - - - 0.955 - 0.763

Mlig455_025477 {REF} {Length: 934} {RNA1310_65296} {RNA815_34444}

Mlig455_033596 {REF} {Length: 936} {RNA1310_65296} {RNA815_34444}
6. MligTC455_51883 225 4.68 Mlig455_038026, Mlig455_038936

Neo: Irradiation

Age: -

Region-enriched R5: 4.340/0.02386

 GLRA2 1.695 0.740 - - 0.955 - -

Mlig455_038026 {REF} {Length: 2683} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=127.7]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=94.3]} {Human: ENSG00000101958, GLRA2, glycine receptor alpha 2, [Score=288, Expect=3e-92]; ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=279, Expect=8e-89]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=276, Expect=8e-88]} {Mouse: ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=285, Expect=3e-91]; ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=278, Expect=3e-88]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=273, Expect=1e-86]} {Dmel: FBgn0024963, GluClalpha, [Score=275, Expect=1e-87]} {Celegans: WBGene00001591, glc-1, Glutamate-gated chloride channel alpha, [RH, Score=269, Expect=5e-85]} {Smed: dd_Smed_v6_18238_0_1, dd_Smed_v6_18238_0_1, [Score=239, Expect=5e-74]} {RNA1509_53717} {RNA1310_10428.1} {RNA815_24141}

Mlig455_038936 {REF} {Length: 6984} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=127.7]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=94.3]} {Human: ENSG00000101958, GLRA2, glycine receptor alpha 2, [Score=288, Expect=3e-92]; ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=279, Expect=8e-89]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=276, Expect=8e-88]} {Mouse: ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=285, Expect=3e-91]; ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=278, Expect=3e-88]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=273, Expect=1e-86]} {Dmel: FBgn0024963, GluClalpha, [Score=275, Expect=1e-87]} {Celegans: WBGene00001591, glc-1, Glutamate-gated chloride channel alpha, [RH, Score=269, Expect=5e-85]} {Smed: dd_Smed_v6_18238_0_1, dd_Smed_v6_18238_0_1, [Score=239, Expect=5e-74]} {RNA1509_53717} {RNA1310_10428.1} {RNA815_24141}
7. MligTC455_48388 631 13.15 Mlig455_050431

Neo: -

Age: -

 DPYSL2 1.675 - - - 0.955 - 0.720 Mlig455_050431 {REF} {Length: 2733} {TRANSSPLICED} {Pfam: Amidohydrolase family [PF01979.22, score=92.6]; Amidohydrolase family [PF07969.13, score=43.6]; Amidohydrolase [PF04909.16, score=27.3]} {Human: ENSG00000092964, DPYSL2, dihydropyrimidinase like 2, [Score=520, Expect=2e-179]; ENSG00000072832, CRMP1, collapsin response mediator protein 1, [Score=518, Expect=1e-178]; ENSG00000113657, DPYSL3, dihydropyrimidinase like 3, [Score=511, Expect=9e-176]; ENSG00000151640, DPYSL4, dihydropyrimidinase like 4, [Score=499, Expect=3e-171]} {Mouse: ENSMUSG00000022048, Dpysl2, dihydropyrimidinase-like 2, [Score=523, Expect=1e-180]; ENSMUSG00000029121, Crmp1, collapsin response mediator protein 1, [Score=522, Expect=3e-180]; ENSMUSG00000024501, Dpysl3, dihydropyrimidinase-like 3, [Score=509, Expect=2e-175]; ENSMUSG00000025478, Dpysl4, dihydropyrimidinase-like 4, [Score=501, Expect=4e-172]; ENSMUSG00000111393, Dpysl4, dihydropyrimidinase-like 4, [Score=501, Expect=4e-172]} {Dmel: FBgn0023023, CRMP, Collapsin Response Mediator Protein, [Score=509, Expect=3e-175]} {Celegans: WBGene00000964, dhp-2, Dihydropyrimidinase 2, [Score=448, Expect=2e-152]} {Smed: dd_Smed_v6_1478_0_1, dd_Smed_v6_1478_0_1, [Score=661, Expect=0.0]} {RNA1509_26733} {RNA1310_11824, RNA1509_26733} {RNA1509_26733, RNA815_4512}
8. MligTC455_30374 175 3.65 Mlig455_011748, Mlig455_070004

Neo: -

Age: Down-Up-Down

 0.984 - - - 0.984 - -

Mlig455_011748 {REF} {Length: 2428} {Pfam: CUB domain [PF00431.22, score=21.7]} {RNA1509_26683} {RNA1310_43894} {RNA815_47918}

Mlig455_070004 {REF} {Length: 4760} {Pfam: DEK C terminal domain [PF08766.13, score=21.4]} {RNA1509_23859} {RNA1310_25192} {RNA815_24957.1}
9. MligTC455_26661 58 1.2 Mlig455_041417

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.215

Region-enriched R4: 6.094/0.02038

 PLEKHG7 0.975 - - - 0.975 - - Mlig455_041417 {REF} {Length: 3511} {Pfam: RhoGEF domain [PF00621.22, score=74.2]} {Human: ENSG00000187510, PLEKHG7, pleckstrin homology and RhoGEF domain containing G7, [Score=126, Expect=2e-29]} {Mouse: ENSMUSG00000038167, Plekhg6, pleckstrin homology domain containing, family G (with RhoGef domain) member 6, [Score=71.6, Expect=2e-12]; ENSMUSG00000039713, Plekhg5, pleckstrin homology domain containing, family G (with RhoGef domain) member 5, [Score=68.9, Expect=2e-11]} {Dmel: FBgn0261556, CG42674, [Score=67.4, Expect=4e-11]} {Celegans: WBGene00022391, Y95B8A.12, [Score=197, Expect=3e-54]} {Smed: dd_Smed_v6_20050_0_1, dd_Smed_v6_20050_0_1, [Score=363, Expect=1e-114]} {RNA1509_30198} {RNA1310_1409.2} {RNA815_382}
10. MligTC455_39813 75 1.57 Mlig455_045961

Neo: -

Age: -

 SLC17A8 0.975 - - - 0.975 - - Mlig455_045961 {REF} {Length: 3015} {Pfam: Major Facilitator Superfamily [PF07690.18, score=170.7]; Uncharacterised MFS-type transporter YbfB [PF06779.16, score=20.5]} {Human: ENSG00000179520, SLC17A8, solute carrier family 17 member 8, [RH, Score=540, Expect=0.0]; ENSG00000091664, SLC17A6, solute carrier family 17 member 6, [RH, Score=540, Expect=0.0]; ENSG00000104888, SLC17A7, solute carrier family 17 member 7, [RH, Score=529, Expect=0.0]} {Mouse: ENSMUSG00000019935, Slc17a8, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8, [RH, Score=543, Expect=0.0]; ENSMUSG00000030500, Slc17a6, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6, [RH, Score=541, Expect=0.0]; ENSMUSG00000070570, Slc17a7, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7, [RH, Score=528, Expect=0.0]} {Dmel: FBgn0031424, VGlut, Vesicular glutamate transporter, [RH, Score=492, Expect=1e-166]} {Celegans: WBGene00001135, eat-4, Probable vesicular glutamate transporter eat-4, [RH, Score=476, Expect=2e-161]} {Smed: dd_Smed_v6_10192_0_1, dd_Smed_v6_10192_0_1, [RH, Score=588, Expect=0.0]} {RNA1509_53919} {RNA1310_33327} {RNA815_42042}
11. MligTC455_37342 203 4.23 Mlig455_024018

Neo: -

Age: -

 0.968 - - - 0.968 - - Mlig455_024018 {REF} {Length: 1374} {RNA1509_59718} {RNA1310_33285} {RNA815_22262}
12. MligTC455_44752 734 15.3 Mlig455_006900

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.321

 IER3IP1 0.966 - - - - - 0.966 Mlig455_006900 {REF} {Length: 1800} {TRANSSPLICED} {Pfam: Yos1-like [PF08571.12, score=96.1]} {Human: ENSG00000134049, IER3IP1, immediate early response 3 interacting protein 1, [RH, Score=82.0, Expect=8e-22]; ENSG00000267228, AC012254.2, novel transcript, [RH, Score=82.0, Expect=8e-22]} {Mouse: ENSMUSG00000090000, Ier3ip1, immediate early response 3 interacting protein 1, [RH, Score=81.6, Expect=8e-22]} {Dmel: FBgn0052069, CG32069, [RH, Score=88.2, Expect=1e-24]} {Celegans: WBGene00012371, W09G3.8, [RH, Score=63.9, Expect=4e-15]} {Smed: dd_Smed_v6_7782_0_1, dd_Smed_v6_7782_0_1, [RH, Score=84.3, Expect=3e-23]} {RNA1509_14620, RNA1509_28131, RNA1509_29591} {RNA1310_34670.1, RNA1509_14620, RNA1509_28131, RNA1509_29591} {RNA1509_14620, RNA1509_28131, RNA1509_29591, RNA815_29229}
13. MligTC455_32522 134 2.8 Mlig455_040944

Neo: -

Age: -

 0.964 - - - 0.964 - - Mlig455_040944 {REF} {Length: 2473} {RNA1509_46835} {RNA1310_21335.2} {RNA815_21965}
14. MligTC455_20875 83 1.74 Mlig455_046583

Neo: -

Age: Up-Down-Down

 CSMD2 0.961 - - - 0.961 - - Mlig455_046583 {REF} {Length: 3648} {Pfam: CUB domain [PF00431.22, score=136.9]} {Human: ENSG00000121904, CSMD2, CUB and Sushi multiple domains 2, [Score=55.8, Expect=5e-07]} {Mouse: ENSMUSG00000028804, Csmd2, CUB and Sushi multiple domains 2, [Score=55.1, Expect=4e-07]; ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=52.4, Expect=3e-06]} {Dmel: FBgn0085431, CG34402, [RH, Score=91.3, Expect=1e-18]} {Smed: dd_Smed_v6_19493_0_1, dd_Smed_v6_19493_0_1, [Score=265, Expect=1e-76]} {RNA1509_49507} {RNA1310_26376} {RNA815_21454}
15. MligTC455_46894 109 2.26 Mlig455_017820

Neo: -

Age: -

 SCRT1 0.961 - - - 0.961 - - Mlig455_017820 {REF} {Length: 2221} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=84.8]; C2H2-type zinc finger [PF13894.8, score=67.2]; Zinc-finger double domain [PF13465.8, score=60.4]; C2H2-type zinc finger [PF13912.8, score=33.8]; Zinc ribbon domain [PF09723.12, score=21.4]} {Human: ENSG00000261678, SCRT1, scratch family transcriptional repressor 1, [RH, Score=252, Expect=1e-78]; ENSG00000284923, SCRT1, scratch family transcriptional repressor 1, [RH, Score=252, Expect=1e-78]; ENSG00000215397, SCRT2, scratch family transcriptional repressor 2, [RH, Score=247, Expect=2e-77]} {Mouse: ENSMUSG00000048385, Scrt1, scratch family zinc finger 1, [RH, Score=261, Expect=2e-82]; ENSMUSG00000060257, Scrt2, scratch family zinc finger 2, [RH, Score=255, Expect=2e-80]} {Dmel: FBgn0004880, scrt, scratch, [RH, Score=279, Expect=8e-86]} {Celegans: WBGene00000468, ces-1, CES-1; CEll death Specification, [RH, Score=219, Expect=1e-67]} {Smed: dd_Smed_v6_18952_0_1, dd_Smed_v6_18952_0_1, [RH, Score=291, Expect=5e-94]} {RNA1310_21478.1} {RNA815_23567}
16. MligTC455_51829 46 0.96 Mlig455_016891

Neo: -

Age: -

 0.961 - - - 0.961 - - Mlig455_016891 {REF} {Length: 5321} {Pfam: THAP domain [PF05485.14, score=38.3]} {RNA1509_57489} {RNA1310_20033} {RNA815_46440}
17. MligTC455_19176 183 3.82 Mlig455_060775

Neo: -

Age: Up-Down-Down

 ARHGEF17 0.96 - - - 0.960 - - Mlig455_060775 {REF} {Length: 7482} {Pfam: RhoGEF domain [PF00621.22, score=140.8]; WD40 repeated domain [PF19056.2, score=130.9]} {Human: ENSG00000110237, ARHGEF17, Rho guanine nucleotide exchange factor 17, [RH, Score=297, Expect=2e-80]} {Mouse: ENSMUSG00000032875, Arhgef17, Rho guanine nucleotide exchange factor (GEF) 17, [RH, Score=293, Expect=1e-79]} {Dmel: FBgn0262562, CG43102, [Score=286, Expect=2e-77]} {Celegans: WBGene00019832, osg-1, Rho guanine nucleotide exchange factor osg-1, [RH, Score=247, Expect=2e-66]} {Smed: dd_Smed_v6_2922_0_1, dd_Smed_v6_2922_0_1, [Score=393, Expect=3e-112]} {RNA1509_22924, RNA1509_31174} {RNA1310_12203, RNA1509_22924} {RNA1509_22924, RNA815_9179}
18. MligTC455_37343 240 4.99 Mlig455_024086

Neo: -

Age: Up-Down-Up

Region-enriched R8: 2.659/0.04266

 0.96 - - - 0.960 - - Mlig455_024086 {REF} {Length: 4209} {RNA1509_36528, RNA1509_59718} {RNA1310_12514, RNA1509_36528, RNA1509_59718} {RNA1509_36528, RNA1509_59718, RNA815_21020}
19. MligTC455_46007 1095 22.82 Mlig455_015551

Neo: -

Age: -

Regeneration-upregulated BL: 1.762

Regeneration-enriched BL: 1.762

 RBMS3 0.959 - - - 0.959 - - Mlig455_015551 {REF} {Length: 2417} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=48.0]} {Human: ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [RH, Score=114, Expect=3e-27]; ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [RH, Score=112, Expect=1e-26]} {Mouse: ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [RH, Score=115, Expect=8e-28]; ENSMUSG00000039607, Rbms3, RNA binding motif, single stranded interacting protein, [RH, Score=113, Expect=5e-27]} {Dmel: FBgn0052423, shep, alan shepard, [Score=100, Expect=4e-22]} {Celegans: WBGene00006331, sup-26, SUPpressor, [RH, Score=118, Expect=9e-29]} {Smed: dd_Smed_v6_2612_0_1, dd_Smed_v6_2612_0_1, [RH, Score=109, Expect=2e-25]} {RNA1509_18229} {RNA1310_2231} {RNA815_12809}
20. MligTC455_13611 55 1.14 Mlig455_005961, Mlig455_005966

Neo: -

Age: Down-Down-Up

 0.956 - - - 0.956 - -

Mlig455_005961 {REF} {Length: 2509} {Pfam: NPH3 family [PF03000.16, score=49.4]; BTB/POZ domain [PF00651.33, score=25.3]} {Smed: dd_Smed_v6_8081_0_1, dd_Smed_v6_8081_0_1, [Score=165, Expect=2e-43]} {RNA1310_11638} {RNA815_12936}

Mlig455_005966 {REF} {Length: 927} {RNA1509_27849} {RNA1310_5087} {RNA815_12936}
21. MligTC455_16954 615 12.82 Mlig455_051477

Neo: -

Age: Down-Up-Down

Regeneration-upregulated BL: 2.488

Regeneration-enriched BL: 2.488

 GRIK3 0.956 - - - 0.956 - - Mlig455_051477 {REF} {Length: 3847} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=108.2]; Ligand-gated ion channel [PF00060.28, score=57.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=56.6]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=209, Expect=1e-58]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=207, Expect=5e-58]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=202, Expect=7e-56]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=201, Expect=1e-55]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=209, Expect=6e-59]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=206, Expect=7e-58]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=204, Expect=4e-57]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=200, Expect=2e-55]} {Dmel: FBgn0038837, CG3822, [Score=203, Expect=4e-57]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=227, Expect=2e-65]} {Smed: dd_Smed_v6_8816_0_1, dd_Smed_v6_8816_0_1, [Score=201, Expect=4e-56]} {RNA1509_27953} {RNA1310_18821.1, RNA1509_27953} {RNA1509_27953, RNA815_21632}
22. MligTC455_20886 97 2.02 Mlig455_003090

Neo: -

Age: -

 0.956 - - - 0.956 - - Mlig455_003090 {REF} {Length: 913} {NoTransDecoderORF} {RNA1310_65713.1} {RNA815_44606}
23. MligTC455_33101 89 1.85 Mlig455_064071, Mlig455_064992

Neo: -

Age: -

 0.956 - - 0.956 - - -

Mlig455_064071 {REF} {Length: 3613} {RNA1509_56890} {RNA1310_43571.1} {RNA815_52616}

Mlig455_064992 {REF} {Length: 2928} {NoTransDecoderORF} {RNA1509_56890} {RNA1310_43571.1} {RNA815_52616}
24. MligTC455_41194 400 8.34 Mlig455_021021

Neo: -

Age: -

 DGKB 0.956 - - - 0.956 - - Mlig455_021021 {REF} {Length: 6535} {Pfam: Diacylglycerol kinase accessory domain [PF00609.21, score=154.2]; Diacylglycerol kinase catalytic domain [PF00781.26, score=96.7]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=71.3]; EF hand [PF00036.34, score=36.7]; EF-hand domain [PF13405.8, score=34.7]; EF-hand domain pair [PF13499.8, score=33.2]; EF hand [PF13202.8, score=22.7]; EF-hand domain pair [PF13833.8, score=22.6]} {Human: ENSG00000136267, DGKB, diacylglycerol kinase beta, [RH, Score=753, Expect=0.0]} {Mouse: ENSMUSG00000036095, Dgkb, diacylglycerol kinase, beta, [RH, Score=745, Expect=0.0]} {Dmel: FBgn0085390, Dgk, Diacyl glycerol kinase, [RH, Score=543, Expect=1e-173]} {Celegans: WBGene00000960, dgk-3, Probable diacylglycerol kinase 3, [RH, Score=690, Expect=0.0]} {Smed: dd_Smed_v6_6249_0_1, dd_Smed_v6_6249_0_1, [RH, Score=839, Expect=0.0]} {RNA1509_42224} {RNA1310_4860.1} {RNA815_9831}
25. MligTC455_44753 727 15.15 Mlig455_017913

Neo: -

Age: -

 IER3IP1 0.956 - - - - - 0.956 Mlig455_017913 {REF} {Length: 1437} {TRANSSPLICED} {Pfam: Yos1-like [PF08571.12, score=96.1]} {Human: ENSG00000134049, IER3IP1, immediate early response 3 interacting protein 1, [RH, Score=82.0, Expect=8e-22]; ENSG00000267228, AC012254.2, novel transcript, [RH, Score=82.0, Expect=8e-22]} {Mouse: ENSMUSG00000090000, Ier3ip1, immediate early response 3 interacting protein 1, [RH, Score=81.6, Expect=8e-22]} {Dmel: FBgn0052069, CG32069, [RH, Score=88.2, Expect=1e-24]} {Celegans: WBGene00012371, W09G3.8, [RH, Score=63.9, Expect=4e-15]} {Smed: dd_Smed_v6_7782_0_1, dd_Smed_v6_7782_0_1, [RH, Score=84.3, Expect=3e-23]} {RNA1509_28131, RNA1509_42004} {RNA1310_34670.1, RNA1509_42004} {RNA1509_42004, RNA815_29229}
26. MligTC455_14382 31 0.64 Mlig455_013717

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_013717 {REF} {Length: 1296} {Pfam: Glycine rich protein [PF12810.9, score=23.0]} {RNA1509_12513} {RNA1310_133784} {RNA815_37371}
27. MligTC455_50156 379 7.9 Mlig455_061886

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.454

Regeneration-upregulated BL: 2.171

Regeneration-enriched BL: 2.171

 BEST2 0.955 - - - 0.955 - - Mlig455_061886 {REF} {Length: 2189} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=157.1]} {Human: ENSG00000039987, BEST2, bestrophin 2, [Score=102, Expect=2e-22]} {Mouse: ENSMUSG00000052819, Best2, bestrophin 2, [Score=102, Expect=5e-23]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=181, Expect=1e-49]} {Celegans: WBGene00014989, best-23, Bestrophin homolog, [Score=144, Expect=3e-38]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=233, Expect=5e-71]} {RNA1509_12991, RNA1509_40942} {RNA1310_14129.1, RNA1509_12991, RNA1509_40942} {RNA1509_12991, RNA1509_40942, RNA815_5240}
28. MligTC455_30378 210 4.38 Mlig455_051456, Mlig455_066687

Neo: -

Age: logFC(26M/2M)=-0.544

 0.954 - - - 0.954 - -

Mlig455_051456 {REF} {Length: 3408} {Pfam: Glycosyltransferase family 92 [PF01697.29, score=40.5]} {Dmel: FBgn0032506, CG9395, [Score=52.8, Expect=5e-07]} {Smed: dd_Smed_v6_5401_0_1, dd_Smed_v6_5401_0_1, [Score=140, Expect=8e-37]} {RNA1509_28030, RNA1509_3317} {RNA1310_18753, RNA1509_28030} {RNA1509_28030, RNA815_1380.1}

Mlig455_066687 {REF} {Length: 3117} {Pfam: Glycosyltransferase family 92 [PF01697.29, score=98.4]; Glycosyl transferase family 2 [PF13704.8, score=25.1]} {Dmel: FBgn0032506, CG9395, [Score=74.3, Expect=8e-14]} {Celegans: WBGene00012941, Y47D3B.4, [Score=48.5, Expect=7e-06]} {Smed: dd_Smed_v6_5401_0_1, dd_Smed_v6_5401_0_1, [Score=219, Expect=1e-66]} {RNA1509_9219} {RNA1310_16883} {RNA815_23308}
29. MligTC455_39080 170 3.54 Mlig455_008706

Neo: Neoblast, stringent

Age: Up-Down-Up

Region-enriched R5: 2.412/0.00211

 MRE11 0.954 0.954 - - - - - Mlig455_008706 {REF} {Length: 4787} {TRANSSPLICED} {Pfam: Mre11 DNA-binding presumed domain [PF04152.16, score=118.6]; Calcineurin-like phosphoesterase [PF00149.30, score=26.0]} {Human: ENSG00000020922, MRE11, MRE11 homolog, double strand break repair nuclease, [Score=411, Expect=3e-134]} {Mouse: ENSMUSG00000031928, Mre11a, MRE11A homolog A, double strand break repair nuclease, [Score=406, Expect=9e-133]} {Dmel: FBgn0020270, mre11, meiotic recombination 11, [Score=290, Expect=3e-89]} {Celegans: WBGene00003405, mre-11, Double-strand break repair protein mre-11, [Score=281, Expect=4e-85]} {Smed: dd_Smed_v6_4961_0_1, dd_Smed_v6_4961_0_1, [Score=360, Expect=1e-116]} {RNA1509_23285} {RNA1310_7622.1} {RNA815_13142}
30. MligTC455_46399 80 1.66 Mlig455_022117

Neo: -

Age: Up-Up-Down

 0.954 - - 0.954 - - - Mlig455_022117 {REF} {Length: 1088} {TRANSSPLICED} {RNA1310_7748.1} {RNA815_21787}
31. MligTC455_49829 606 12.63 Mlig455_018528

Neo: -

Age: -

Region-enriched R8: 5.323/0.00000

 0.954 - - - 0.954 - - Mlig455_018528 {REF} {Length: 3314} {Pfam: Plectin repeat [PF00681.22, score=39.5]; SH3 domain [PF17902.3, score=22.5]} {Dmel: FBgn0013733, shot, short stop, [Score=57.0, Expect=9e-08]} {Celegans: WBGene00006952, wrt-6, Warthog protein 6 Warthog protein 6 N-product Warthog protein 6 C-product, [Score=51.2, Expect=3e-06]} {RNA1509_40966} {RNA1310_5072.1} {RNA815_12828}
32. MligTC455_50155 542 11.29 Mlig455_010493

Neo: -

Age: Down-Down-Up

Regeneration-upregulated BL: 2.962

Regeneration-enriched BL: 2.962

 BEST2 0.954 - - - 0.954 - - Mlig455_010493 {REF} {Length: 2707} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=157.0]} {Human: ENSG00000039987, BEST2, bestrophin 2, [Score=102, Expect=2e-22]} {Mouse: ENSMUSG00000052819, Best2, bestrophin 2, [Score=103, Expect=6e-23]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=178, Expect=6e-48]} {Celegans: WBGene00015288, best-4, Bestrophin homolog, [Score=146, Expect=2e-37]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=235, Expect=7e-71]} {RNA1509_40942} {RNA1310_14129.1} {RNA815_5240}
33. MligTC455_17752 226 4.71 Mlig455_030604, Mlig455_031036

Neo: -

Age: -

 SHOX, SHOX2 0.953 - - - 0.953 - -

Mlig455_030604 {REF} {Length: 2696} {Pfam: Homeodomain [PF00046.31, score=84.7]; Homeobox KN domain [PF05920.13, score=23.1]} {Human: ENSG00000168779, SHOX2, short stature homeobox 2, [RH, Score=125, Expect=6e-34]; ENSG00000185960, SHOX, short stature homeobox, [RH, Score=123, Expect=6e-33]} {Mouse: ENSMUSG00000027833, Shox2, short stature homeobox 2, [RH, Score=125, Expect=4e-34]} {Dmel: FBgn0085396, CG34367, [RH, Score=125, Expect=3e-32]} {Celegans: WBGene00006744, unc-4, Homeobox protein unc-4, [Score=94.7, Expect=2e-22]} {Smed: dd_Smed_v6_28958_0_1, dd_Smed_v6_28958_0_1, [RH, Score=104, Expect=5e-27]} {RNA1509_45406} {RNA1310_16717} {RNA815_29025}

Mlig455_031036 {REF} {Length: 3001} {Pfam: Homeodomain [PF00046.31, score=84.8]; Homeobox KN domain [PF05920.13, score=23.1]} {Human: ENSG00000185960, SHOX, short stature homeobox, [RH, Score=126, Expect=2e-33]; ENSG00000168779, SHOX2, short stature homeobox 2, [RH, Score=124, Expect=7e-34]} {Mouse: ENSMUSG00000027833, Shox2, short stature homeobox 2, [RH, Score=124, Expect=9e-35]} {Dmel: FBgn0085396, CG34367, [RH, Score=125, Expect=3e-32]} {Celegans: WBGene00006744, unc-4, Homeobox protein unc-4, [Score=94.7, Expect=2e-22]} {Smed: dd_Smed_v6_28958_0_1, dd_Smed_v6_28958_0_1, [RH, Score=104, Expect=5e-27]} {RNA1509_45406} {RNA1310_16717} {RNA815_29025}
34. MligTC455_16175 64 1.34 Mlig455_047192

Neo: -

Age: -

 GCM1 0.952 - - - 0.952 - - Mlig455_047192 {REF} {Length: 2352} {Pfam: GCM motif protein [PF03615.17, score=223.0]} {Human: ENSG00000137270, GCM1, glial cells missing homolog 1, [RH, Score=196, Expect=4e-57]; ENSG00000124827, GCM2, glial cells missing homolog 2, [RH, Score=191, Expect=2e-54]} {Mouse: ENSMUSG00000023333, Gcm1, glial cells missing homolog 1, [RH, Score=192, Expect=1e-55]; ENSMUSG00000021362, Gcm2, glial cells missing homolog 2, [RH, Score=188, Expect=1e-53]} {Dmel: FBgn0014179, gcm, glial cells missing, [RH, Score=229, Expect=3e-69]} {Smed: dd_Smed_v6_15107_0_1, dd_Smed_v6_15107_0_1, [RH, Score=186, Expect=3e-54]} {RNA1509_58813} {RNA1310_66943} {RNA815_43872}
35. MligTC455_31713 208 4.34 Mlig455_025223

Neo: -

Age: logFC(26M/2M)=-0.450

 WDR47 0.952 - - - 0.952 - - Mlig455_025223 {REF} {Length: 4883} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=82.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=43.1]} {Human: ENSG00000085433, WDR47, WD repeat domain 47, [RH, Score=303, Expect=1e-87]} {Mouse: ENSMUSG00000040389, Wdr47, WD repeat domain 47, [Score=310, Expect=5e-90]} {Dmel: FBgn0034931, CG2812, [RH, Score=276, Expect=4e-84]} {Celegans: WBGene00019434, nmtn-1, NeMiTiN (Neuronal enriched MAP interacting protein) homolog, [RH, Score=302, Expect=2e-87]} {Smed: dd_Smed_v6_3366_0_2, dd_Smed_v6_3366_0_2, [RH, Score=330, Expect=8e-98]} {RNA1509_17472} {RNA1310_5088, RNA1509_17472} {RNA1509_17472, RNA815_16728}
36. MligTC455_47723 247 5.15 Mlig455_030923

Neo: -

Age: -

 SLC18B1 0.952 - - - 0.952 - - Mlig455_030923 {REF} {Length: 2647} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=108.2]} {Human: ENSG00000146409, SLC18B1, solute carrier family 18 member B1, [Score=62.0, Expect=3e-10]} {Mouse: ENSMUSG00000037455, Slc18b1, solute carrier family 18, subfamily B, member 1, [Score=63.9, Expect=6e-11]} {Celegans: WBGene00018860, vpat-1, Vesicular PolyAmine Transporter, [Score=82.4, Expect=2e-17]} {RNA1509_46153} {RNA1310_8118, RNA1509_46153} {RNA1509_46153, RNA815_3189}
37. MligTC455_50542 61 1.28 Mlig455_033117

Neo: -

Age: logFC(26M/2M)=-1.103

 NFIA 0.952 - - - 0.952 - - Mlig455_033117 {REF} {Length: 3593} {Human: ENSG00000162599, NFIA, nuclear factor I A, [Score=85.1, Expect=1e-16]; ENSG00000147862, NFIB, nuclear factor I B, [Score=84.0, Expect=2e-16]; ENSG00000008441, NFIX, nuclear factor I X, [Score=82.4, Expect=8e-16]; ENSG00000141905, NFIC, nuclear factor I C, [Score=81.6, Expect=1e-15]} {Mouse: ENSMUSG00000028565, Nfia, nuclear factor I/A, [Score=84.3, Expect=6e-17]; ENSMUSG00000008575, Nfib, nuclear factor I/B, [Score=84.3, Expect=1e-16]; ENSMUSG00000055053, Nfic, nuclear factor I/C, [Score=82.8, Expect=2e-16]; ENSMUSG00000001911, Nfix, nuclear factor I/X, [Score=81.3, Expect=1e-15]} {Dmel: FBgn0042696, NfI, Nuclear factor I, [Score=84.3, Expect=1e-16]} {Celegans: WBGene00003592, nfi-1, NFI (Nuclear Factor I) family, [Score=90.5, Expect=1e-18]} {Smed: dd_Smed_v6_12312_0_1, dd_Smed_v6_12312_0_1, [Score=151, Expect=1e-37]} {RNA1310_40008.1} {RNA815_37863}
38. MligTC455_16983 56 1.17 Mlig455_065034

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_065034 {REF} {Length: 1689} {Pfam: Glycine rich protein [PF12810.9, score=30.9]} {RNA1310_53101} {RNA815_30313.1}
39. MligTC455_28664 5401 112.51 Mlig455_050841

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.698

Regeneration-upregulated BL: 2.197

Regeneration-enriched BL: 2.197

 0.951 - - - 0.951 - - Mlig455_050841 {REF} {Length: 893} {RNA1509_1353, RNA1509_761} {RNA1310_73021.1, RNA1509_1353} {RNA1509_1353, RNA815_26455.2}
40. MligTC455_42109 6763 140.9 Mlig455_024113

Neo: -

Age: -

Regeneration-upregulated BL: 1.619

Regeneration-enriched BL: 1.619

 COL6A6 0.951 - - - 0.951 - - Mlig455_024113 {REF} {Length: 11956} {Pfam: von Willebrand factor type A domain [PF00092.30, score=218.8]; von Willebrand factor type A domain [PF13519.8, score=107.4]; Transcription factor TFIID (or TATA-binding protein, TBP) [PF00352.23, score=38.9]} {Human: ENSG00000206384, COL6A6, collagen type VI alpha 6 chain, [Score=90.1, Expect=7e-17]; ENSG00000111799, COL12A1, collagen type XII alpha 1 chain, [Score=86.3, Expect=1e-15]} {Mouse: ENSMUSG00000032332, Col12a1, collagen, type XII, alpha 1, [Score=85.9, Expect=1e-15]; ENSMUSG00000025650, Col7a1, collagen, type VII, alpha 1, [Score=84.3, Expect=3e-15]; ENSMUSG00000022371, Col14a1, collagen, type XIV, alpha 1, [Score=83.2, Expect=6e-15]} {Celegans: WBGene00019570, K09E2.1, [RH, Score=64.7, Expect=1e-09]} {Smed: dd_Smed_v6_1071_0_1, dd_Smed_v6_1071_0_1, [Score=126, Expect=9e-29]} {RNA1509_167} {RNA1310_280.1} {RNA815_108}
41. MligTC455_48170 120 2.49 Mlig455_006527, Mlig455_070665

Neo: -

Age: -

Region-enriched R7: 3.768/0.04650

 PCDH17 0.951 - - - 0.951 - -

Mlig455_006527 {REF} {Length: 3880} {Pfam: Cadherin domain [PF00028.19, score=304.2]; Cadherin-like [PF16184.7, score=28.3]; Cadherin-like [PF08266.14, score=24.0]} {Human: ENSG00000118946, PCDH17, protocadherin 17, [RH, Score=273, Expect=8e-77]} {Mouse: ENSMUSG00000035566, Pcdh17, protocadherin 17, [RH, Score=276, Expect=2e-76]} {Dmel: FBgn0284247, ds, dachsous, [Score=246, Expect=5e-66]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=177, Expect=8e-45]} {Smed: dd_Smed_v6_17019_0_2, dd_Smed_v6_17019_0_2, [RH, Score=345, Expect=1e-101]} {RNA1509_45762} {RNA1310_4962} {RNA815_31557}

Mlig455_070665 {REF} {Length: 3977} {Pfam: Cadherin domain [PF00028.19, score=304.6]; Cadherin-like [PF16184.7, score=28.6]; Cadherin-like [PF08266.14, score=24.1]} {Human: ENSG00000118946, PCDH17, protocadherin 17, [RH, Score=273, Expect=5e-77]} {Mouse: ENSMUSG00000035566, Pcdh17, protocadherin 17, [RH, Score=276, Expect=1e-76]} {Dmel: FBgn0284247, ds, dachsous, [Score=246, Expect=5e-66]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=176, Expect=2e-44]} {Smed: dd_Smed_v6_17019_0_2, dd_Smed_v6_17019_0_2, [RH, Score=345, Expect=7e-102]} {RNA1509_45762} {RNA1310_4962, RNA1509_45762} {RNA1509_45762, RNA815_31557}
42. MligTC455_39829 112 2.34 Mlig455_015928

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.786

 SVOP 0.95 - - - 0.950 - - Mlig455_015928 {REF} {Length: 4798} {Pfam: Sugar (and other) transporter [PF00083.26, score=137.1]; Major Facilitator Superfamily [PF07690.18, score=130.4]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=134, Expect=3e-32]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=120, Expect=8e-28]} {Dmel: FBgn0034956, CG4324, [Score=127, Expect=1e-30]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=138, Expect=3e-34]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=178, Expect=4e-48]} {RNA1509_47157} {RNA1310_47802} {RNA815_44733}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA