M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_11858

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_11858 35 0.72 Mlig455_005232

Neo: -

Age: -

 Mlig455_005232 {REF} {Length: 2074} {Pfam: Zinc knuckle [PF00098.25, score=31.3]} {RNA1509_38224, RNA1509_57674} {RNA1310_13132, RNA1509_38224, RNA1509_57674} {RNA1509_38224, RNA1509_57674, RNA815_23258.1}

Cumulative graph for MligTC455_11858

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.22 0.858 0.99979 1.00000
RegionR2 0.607 0.858 0.99974 1.00000
RegionR3 0.2 0.858 0.99982 1.00000
RegionR4 -1.085 0.858 0.99967 1.00000
RegionR5 -0.368 0.858 0.99994 1.00000
RegionR6 -0.414 0.858 0.99988 1.00000
RegionR7 0.204 0.858 0.99990 1.00000
RegionR8 1.077 0.858 0.99985 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.252 0.858 0.99990 1.00000
RegenerationR2 1.418 0.858 0.78310 0.98420
RegenerationR3 1.192 0.858 0.69859 0.94707
RegenerationR4 2.741 0.858 0.96117 1.00000
RegenerationR5 1.713 0.858 0.91261 1.00000
RegenerationR6 3.981 0.858 0.51901 0.81993
RegenerationBL 1.737 0.858 0.99625 1.00000
RegenerationTP 2.395 0.858 0.99176 1.00000


Genes with expression patterns similar to MligTC455_11858

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11858 35 0.72 Mlig455_005232

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_005232 {REF} {Length: 2074} {Pfam: Zinc knuckle [PF00098.25, score=31.3]} {RNA1509_38224, RNA1509_57674} {RNA1310_13132, RNA1509_38224, RNA1509_57674} {RNA1509_38224, RNA1509_57674, RNA815_23258.1}
2. MligTC455_19205 77 1.6 Mlig455_005130

Neo: Irradiation

Age: -

 TIMELESS 0.967 - - - 0.967 - - Mlig455_005130 {REF} {Length: 5329} {TRANSSPLICED} {Pfam: Timeless protein [PF04821.16, score=144.6]} {Human: ENSG00000111602, TIMELESS, timeless circadian regulator, [RH, Score=326, Expect=5e-92]} {Mouse: ENSMUSG00000039994, Timeless, timeless circadian clock 1, [RH, Score=317, Expect=3e-89]} {Dmel: FBgn0038118, timeout, [RH, Score=246, Expect=6e-66]} {Celegans: WBGene00006571, tim-1, Protein timeless homolog, [RH, Score=145, Expect=8e-35]} {Smed: dd_Smed_v6_19257_0_2, dd_Smed_v6_19257_0_2, [RH, Score=233, Expect=6e-64]} {RNA1509_18295, RNA1509_48783} {RNA1310_1716.1, RNA1509_18295, RNA1509_48783} {RNA1509_18295, RNA1509_48783, RNA815_12908}
3. MligTC455_34523 67 1.39 Mlig455_018670, Mlig455_038483, Mlig455_046083, Mlig455_046711, Mlig455_052309, Mlig455_070731

Neo: -

Age: -

 0.963 - - - 0.963 - -

Mlig455_018670 {REF} {Length: 384} {NoTransDecoderORF} {RNA1509_20661} {RNA1310_34086} {RNA815_25565}

Mlig455_038483 {REF} {Length: 265} {NoTransDecoderORF} {RNA815_25565}

Mlig455_046083 {REF} {Length: 197} {NoTransDecoderORF} {RNA815_25565}

Mlig455_046711 {REF} {Length: 734} {NoTransDecoderORF} {RNA1310_82893} {RNA815_25565}

Mlig455_052309 {REF} {Length: 778} {NoTransDecoderORF} {RNA815_25565}

Mlig455_070731 {REF} {Length: 204} {NoTransDecoderORF} {RNA815_25565}
4. MligTC455_17982 97 2.01 Mlig455_002775

Neo: Int S/G2/M

Age: Up-Down-Up

 HMCES 0.959 - - - 0.959 - - Mlig455_002775 {REF} {Length: 1996} {TRANSSPLICED} {Pfam: SOS response associated peptidase (SRAP) [PF02586.16, score=191.8]} {Human: ENSG00000183624, HMCES, 5-hydroxymethylcytosine binding, ES cell specific, [RH, Score=172, Expect=4e-50]} {Mouse: ENSMUSG00000030060, Hmces, 5-hydroxymethylcytosine (hmC) binding, ES cell specific, [RH, Score=166, Expect=6e-48]} {Dmel: FBgn0037656, CG11986, [RH, Score=147, Expect=6e-41]} {Smed: dd_Smed_v6_10093_0_1, dd_Smed_v6_10093_0_1, [RH, Score=155, Expect=3e-45]} {RNA1509_52799} {RNA1310_25228, RNA1509_52799} {RNA1509_52799, RNA815_18744}
5. MligTC455_36091 299 6.23 Mlig455_039231, Mlig455_039250, Mlig455_055359, Mlig455_055417

Neo: -

Age: -

 0.953 - - - 0.953 - -

Mlig455_039231 {REF} {Length: 1096} {NoTransDecoderORF} {RNA1509_30307} {RNA1310_674} {RNA815_24710}

Mlig455_039250 {REF} {Length: 1243} {NoTransDecoderORF} {RNA1509_30307} {RNA1310_674} {RNA815_24710}

Mlig455_055359 {REF} {Length: 1543} {TRANSSPLICED} {RNA1509_30307} {RNA1310_674} {RNA815_24710}

Mlig455_055417 {REF} {Length: 2760} {RNA1509_30307} {RNA1310_674} {RNA815_24710}
6. MligTC455_17596 37 0.77 Mlig455_007172

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_007172 {REF} {Length: 1102} {RNA1509_49095} {RNA1310_50088} {RNA815_56889.1}
7. MligTC455_09545 78 1.62 Mlig455_064832

Neo: -

Age: Up-Down-Up

Regeneration-downregulated R3: -6.794

Regeneration-depleted R3: -6.794

 0.951 - - - 0.951 - - Mlig455_064832 {REF} {Length: 1021} {TRANSSPLICED} {Celegans: WBGene00001538, gcy-12, Receptor-type guanylate cyclase gcy-12, [Score=43.9, Expect=3e-06]} {RNA1509_52181} {RNA1310_8312.1} {RNA815_63453}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA