M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_11960

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_11960 15 0.30 Mlig455_048902

Neo: -

Age: -

 Mlig455_048902 {REF} {Length: 522} {NoTransDecoderORF} {RNA1509_8915} {RNA1310_29109} {RNA815_8638}

Cumulative graph for MligTC455_11960

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.486 0.758 0.99976 1.00000
RegionR2 -1.253 0.758 1.00000 1.00000
RegionR3 -0.758 0.758 0.99979 1.00000
RegionR4 1.173 0.758 1.00000 1.00000
RegionR5 -0.48 0.758 1.00000 1.00000
RegionR6 -0.814 0.758 0.99976 1.00000
RegionR7 -0.224 0.758 0.99991 1.00000
RegionR8 -0.129 0.758 0.99994 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.742 0.758 0.99984 1.00000
RegenerationR2 2.515 0.758 0.21096 0.65817
RegenerationR3 2.772 0.758 0.50948 0.86083
RegenerationR4 1.336 0.758 0.63366 0.92455
RegenerationR5 1.998 0.758 0.47162 0.84258
RegenerationR6 4.17 0.758 0.28197 0.63184
RegenerationBL 3.533 0.758 0.22671 0.57650
RegenerationTP -0.709 0.758 0.99976 1.00000


Genes with expression patterns similar to MligTC455_11960

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11960 15 0.3 Mlig455_048902

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_048902 {REF} {Length: 522} {NoTransDecoderORF} {RNA1509_8915} {RNA1310_29109} {RNA815_8638}
2. MligTC455_39022 18 0.38 Mlig455_040588, Mlig455_062046, Mlig455_068792

Neo: -

Age: -

 0.977 - - - 0.977 - -

Mlig455_040588 {REF} {Length: 1473} {RNA1509_21391} {RNA1310_6366} {RNA815_11612}

Mlig455_062046 {REF} {Length: 802} {TRANSSPLICED} {RNA1509_21391} {RNA1310_6366} {RNA815_31706}

Mlig455_068792 {REF} {Length: 1535} {TRANSSPLICED} {RNA1509_21391} {RNA1310_6366} {RNA815_11612}
3. MligTC455_25233 925 19.27 Mlig455_002798, Mlig455_002812

Neo: Irradiation

Age: -

 CDC25B 0.974 - - - - 0.974 -

Mlig455_002798 {REF} {Length: 2234} {Pfam: Rhodanese-like domain [PF00581.22, score=42.3]} {Human: ENSG00000101224, CDC25B, cell division cycle 25B, [RH, Score=165, Expect=1e-44]} {Mouse: ENSMUSG00000027330, Cdc25b, cell division cycle 25B, [Score=160, Expect=9e-43]; ENSMUSG00000032477, Cdc25a, cell division cycle 25A, [Score=155, Expect=2e-41]} {Dmel: FBgn0003525, stg, string, [RH, Score=193, Expect=1e-55]} {Celegans: WBGene00000389, cdc-25.4, Cell Division Cycle related, [RH, Score=103, Expect=1e-24]} {Smed: dd_Smed_v6_7176_0_2, dd_Smed_v6_7176_0_2, [RH, Score=113, Expect=6e-27]} {RNA1509_22510} {RNA1310_11197} {RNA815_20308}

Mlig455_002812 {REF} {Length: 2309} {Pfam: Rhodanese-like domain [PF00581.22, score=41.9]} {Human: ENSG00000101224, CDC25B, cell division cycle 25B, [RH, Score=164, Expect=4e-44]} {Mouse: ENSMUSG00000027330, Cdc25b, cell division cycle 25B, [Score=159, Expect=3e-42]; ENSMUSG00000032477, Cdc25a, cell division cycle 25A, [Score=155, Expect=4e-41]} {Dmel: FBgn0003525, stg, string, [RH, Score=191, Expect=7e-55]} {Celegans: WBGene00000389, cdc-25.4, Cell Division Cycle related, [RH, Score=103, Expect=2e-24]} {Smed: dd_Smed_v6_7858_0_3, dd_Smed_v6_7858_0_3, [Score=116, Expect=7e-28]} {RNA1509_22510} {RNA1310_11197} {RNA815_20308}
4. MligTC455_08023 27 0.55 Mlig455_001712, Mlig455_010117, Mlig455_011186, Mlig455_018350, Mlig455_021159, Mlig455_033119, Mlig455_038320, Mlig455_040682, Mlig455_042247, Mlig455_052134, Mlig455_056327

Neo: -

Age: -

 SETMAR 0.971 - - - - 0.971 -

Mlig455_001712 {REF} {Length: 417} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=39.8]} {RNA1509_39987} {RNA1310_11976} {RNA815_1768.1}

Mlig455_010117 {REF} {Length: 784} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=33.8]; Homeodomain-like domain [PF13565.8, score=32.7]; Transposase [PF01498.20, score=19.3]} {RNA1509_2376} {RNA1310_264.1} {RNA815_1768.1}

Mlig455_011186 {REF} {Length: 1040} {TRANSSPLICED} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=33.7]; HTH domain in Mos1 transposase [PF17906.3, score=30.3]; Homeodomain-like domain [PF13565.8, score=28.9]; DDE superfamily endonuclease [PF13358.8, score=28.4]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=138, Expect=3e-36]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=68.6, Expect=2e-14]} {RNA1509_39987} {RNA1310_11976} {RNA815_1768.1}

Mlig455_018350 {REF} {Length: 309} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=33.5]; HTH domain in Mos1 transposase [PF17906.3, score=32.0]; DDE superfamily endonuclease [PF13358.8, score=29.7]; Homeodomain-like domain [PF13565.8, score=24.9]; Integrase core domain [PF00665.28, score=21.6]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=147, Expect=2e-38]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=70.5, Expect=7e-15]} {RNA1509_50810} {RNA1310_11976} {RNA815_1768.1}

Mlig455_021159 {REF} {Length: 383} {Pfam: Homeodomain-like domain [PF13565.8, score=29.5]; Transposase [PF01498.20, score=19.0]} {RNA1509_2376} {RNA1310_264.1} {RNA815_1768.1}

Mlig455_033119 {REF} {Length: 1548} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=33.0]; HTH domain in Mos1 transposase [PF17906.3, score=32.3]; Homeodomain-like domain [PF13565.8, score=30.9]; DDE superfamily endonuclease [PF13358.8, score=27.8]; Integrase core domain [PF00665.28, score=18.8]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=146, Expect=5e-38]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=67.8, Expect=5e-14]} {RNA1509_39987} {RNA1310_264.1} {RNA815_1768.1}

Mlig455_038320 {REF} {Length: 1216} {TRANSSPLICED} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=33.4]; HTH domain in Mos1 transposase [PF17906.3, score=30.3]; Homeodomain-like domain [PF13565.8, score=28.9]; DDE superfamily endonuclease [PF13358.8, score=28.4]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=138, Expect=3e-36]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=68.6, Expect=2e-14]} {RNA1509_39987} {RNA1310_11976} {RNA815_1768.1}

Mlig455_040682 {REF} {Length: 2138} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=34.1]; Homeodomain-like domain [PF13565.8, score=33.3]} {RNA1509_39987} {RNA1310_11976} {RNA815_1768.1}

Mlig455_042247 {REF} {Length: 1336} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=33.2]; HTH domain in Mos1 transposase [PF17906.3, score=31.8]; Homeodomain-like domain [PF13565.8, score=30.9]; DDE superfamily endonuclease [PF13358.8, score=27.9]; Integrase core domain [PF00665.28, score=20.4]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=146, Expect=3e-38]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=68.2, Expect=4e-14]} {RNA1509_39987, RNA1509_50810} {RNA1310_264.1, RNA1509_50810} {RNA1509_50810, RNA815_1768.1}

Mlig455_052134 {REF} {Length: 1443} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=33.0]; HTH domain in Mos1 transposase [PF17906.3, score=31.6]; Homeodomain-like domain [PF13565.8, score=30.6]; DDE superfamily endonuclease [PF13358.8, score=23.0]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=149, Expect=2e-38]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=67.4, Expect=7e-14]} {RNA1509_39987} {RNA1310_264.1} {RNA815_1768.1}

Mlig455_056327 {REF} {Length: 717} {TRANSSPLICED} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=32.8]; Homeodomain-like domain [PF13565.8, score=31.2]; Transposase (partial DDE domain) [PF01359.20, score=26.0]} {RNA1509_2376} {RNA1310_264.1} {RNA815_1768.1}
5. MligTC455_04371 9 0.19 Mlig455_043555

Neo: -

Age: -

 0.97 - - - 0.970 - - Mlig455_043555 {REF} {Length: 702} {NoTransDecoderORF} {RNA1310_32636} {RNA815_43957}
6. MligTC455_57326 9 0.19 Mlig455_037925

Neo: -

Age: -

 0.968 - - - 0.968 - - Mlig455_037925 {REF} {Length: 326} {NoTransDecoderORF}
7. MligTC455_15518 65 1.35 Mlig455_008564

Neo: -

Age: -

 0.967 - - - - - 0.967 Mlig455_008564 {REF} {Length: 1590} {TRANSSPLICED} {RNA1509_49619} {RNA1310_9836} {RNA815_16395}
8. MligTC455_28773 151 3.15 Mlig455_014768, Mlig455_025167, Mlig455_046102, Mlig455_056419, Mlig455_063940

Neo: -

Age: -

 0.962 - - - 0.962 - -

Mlig455_014768 {REF} {Length: 115} {NoTransDecoderORF} {RNA1509_31462} {RNA1310_23820} {RNA815_18445}

Mlig455_025167 {REF} {Length: 510} {NoTransDecoderORF} {RNA1509_32564} {RNA1310_77730} {RNA815_37446}

Mlig455_046102 {REF} {Length: 325} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}

Mlig455_056419 {REF} {Length: 287} {NoTransDecoderORF} {RNA1509_46268} {RNA1310_13777} {RNA815_18445}

Mlig455_063940 {REF} {Length: 3198} {RNA1509_31462} {RNA1310_56831} {RNA815_38594}
9. MligTC455_24415 34 0.71 Mlig455_028638

Neo: -

Age: -

Region-enriched R5: 3.666/0.03059

 NFIA 0.96 - - - - - 0.960 Mlig455_028638 {REF} {Length: 4225} {Human: ENSG00000162599, NFIA, nuclear factor I A, [RH, Score=97.8, Expect=3e-20]; ENSG00000147862, NFIB, nuclear factor I B, [RH, Score=96.7, Expect=5e-20]} {Mouse: ENSMUSG00000028565, Nfia, nuclear factor I/A, [RH, Score=97.1, Expect=8e-21]; ENSMUSG00000008575, Nfib, nuclear factor I/B, [RH, Score=96.7, Expect=3e-20]} {Dmel: FBgn0042696, NfI, Nuclear factor I, [Score=91.3, Expect=3e-18]} {Celegans: WBGene00003592, nfi-1, NFI (Nuclear Factor I) family, [Score=101, Expect=2e-21]} {Smed: dd_Smed_v6_7403_0_1, dd_Smed_v6_7403_0_1, [RH, Score=170, Expect=4e-43]} {RNA1509_25355} {RNA1310_4670.1} {RNA815_17090}
10. MligTC455_35637 73 1.51 Mlig455_040909

Neo: -

Age: Down-Up-Down

 MAP4K3 0.958 - - - 0.958 - - Mlig455_040909 {REF} {Length: 2541} {Pfam: Protein kinase domain [PF00069.27, score=71.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=48.3]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=18.4]} {Human: ENSG00000011566, MAP4K3, mitogen-activated protein kinase kinase kinase kinase 3, [Score=92.4, Expect=1e-19]} {Mouse: ENSMUSG00000024242, Map4k3, mitogen-activated protein kinase kinase kinase kinase 3, [Score=91.3, Expect=2e-19]; ENSMUSG00000021108, Prkch, protein kinase C, eta, [Score=88.6, Expect=1e-18]} {Dmel: FBgn0004784, inaC, inactivation no afterpotential C, [Score=91.3, Expect=9e-20]} {Celegans: WBGene00004032, pkc-1, Protein kinase C-like 1B, [Score=84.7, Expect=8e-18]} {Smed: dd_Smed_v6_11674_0_1, dd_Smed_v6_11674_0_1, [Score=90.5, Expect=9e-20]} {RNA1509_45033} {RNA1310_55120, RNA1509_45033} {RNA1509_45033, RNA815_54563}
11. MligTC455_36521 925 19.26 Mlig455_005947

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.433

Region-enriched R6: 7.252/0.00000

 AGRN 0.956 - - - 0.956 - - Mlig455_005947 {REF} {Length: 5654} {Pfam: Kazal-type serine protease inhibitor domain [PF00050.23, score=311.6]; Kazal-type serine protease inhibitor domain [PF07648.17, score=145.1]} {Human: ENSG00000188157, AGRN, agrin, [Score=57.4, Expect=2e-07]} {Mouse: ENSMUSG00000041936, Agrn, agrin, [Score=58.2, Expect=7e-08]} {Celegans: WBGene00009257, F29G6.1, [RH, Score=64.3, Expect=6e-10]} {RNA1509_2508} {RNA1310_17729.1} {RNA815_8713.1}
12. MligTC455_37514 135 2.82 Mlig455_017094

Neo: -

Age: -

 SLC7A2 0.956 - - - 0.956 - - Mlig455_017094 {REF} {Length: 3449} {TRANSSPLICED} {Pfam: Amino acid permease [PF13520.8, score=166.5]; Amino acid permease [PF00324.23, score=101.3]; C-terminus of AA_permease [PF13906.8, score=75.6]} {Human: ENSG00000003989, SLC7A2, solute carrier family 7 member 2, [RH, Score=555, Expect=0.0]} {Mouse: ENSMUSG00000031596, Slc7a2, solute carrier family 7 (cationic amino acid transporter, y+ system), member 2, [Score=554, Expect=0.0]; ENSMUSG00000041313, Slc7a1, solute carrier family 7 (cationic amino acid transporter, y+ system), member 1, [Score=549, Expect=0.0]} {Dmel: FBgn0036764, CG5535, [Score=511, Expect=3e-174]} {Celegans: WBGene00017747, F23F1.6, [Score=361, Expect=1e-116]} {Smed: dd_Smed_v6_16390_0_1, dd_Smed_v6_16390_0_1, [Score=451, Expect=6e-154]} {RNA1509_53203} {RNA1310_13785, RNA1509_53203} {RNA1509_53203, RNA815_48762}
13. MligTC455_11986 13 0.27 Mlig455_026059, Mlig455_037303

Neo: -

Age: Down-Up-Down

 SPEF1 0.955 - - - 0.955 - -

Mlig455_026059 {REF} {Length: 859} {Pfam: CH-like domain in sperm protein [PF06294.13, score=108.1]; CAMSAP CH domain [PF11971.10, score=50.0]} {Human: ENSG00000101222, SPEF1, sperm flagellar 1, [Score=152, Expect=1e-44]} {Mouse: ENSMUSG00000027329, Spef1, sperm flagellar 1, [Score=156, Expect=2e-46]} {Dmel: FBgn0030722, CG12395, [RH, Score=71.2, Expect=3e-14]} {Smed: dd_Smed_v6_5648_0_1, dd_Smed_v6_5648_0_1, [Score=243, Expect=4e-81]} {RNA1509_53151} {RNA1310_9792} {RNA815_15789.1}

Mlig455_037303 {REF} {Length: 931} {Pfam: CH-like domain in sperm protein [PF06294.13, score=109.0]; CAMSAP CH domain [PF11971.10, score=50.3]} {Human: ENSG00000101222, SPEF1, sperm flagellar 1, [Score=120, Expect=7e-33]} {Mouse: ENSMUSG00000027329, Spef1, sperm flagellar 1, [Score=122, Expect=4e-34]; ENSMUSG00000073795, 6430531B16Rik, RIKEN cDNA 6430531B16 gene, [Score=118, Expect=2e-32]} {Dmel: FBgn0036029, CG16719, [Score=61.2, Expect=5e-11]} {Smed: dd_Smed_v6_5648_0_1, dd_Smed_v6_5648_0_1, [Score=192, Expect=1e-61]} {RNA1509_53151} {RNA1310_9792} {RNA815_15789.1}
14. MligTC455_44342 238 4.95 Mlig455_028558, Mlig455_064747

Neo: -

Age: -

 SENP8 0.955 - - - 0.955 - -

Mlig455_028558 {REF} {Length: 1322} {TRANSSPLICED} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=34.9]} {Human: ENSG00000166192, SENP8, SUMO peptidase family member, NEDD8 specific, [RH, Score=78.2, Expect=5e-17]} {Mouse: ENSMUSG00000051705, Senp8, SUMO/sentrin specific peptidase 8, [RH, Score=75.5, Expect=4e-16]} {Dmel: FBgn0033716, Den1, Deneddylase 1, [RH, Score=70.5, Expect=3e-14]} {Smed: dd_Smed_v6_10711_0_1, dd_Smed_v6_10711_0_1, [RH, Score=71.6, Expect=4e-15]} {RNA1509_41235} {RNA1310_35410} {RNA815_32992}

Mlig455_064747 {REF} {Length: 1237} {TRANSSPLICED} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=35.5]} {Human: ENSG00000166192, SENP8, SUMO peptidase family member, NEDD8 specific, [RH, Score=78.2, Expect=5e-17]} {Mouse: ENSMUSG00000051705, Senp8, SUMO/sentrin specific peptidase 8, [RH, Score=75.5, Expect=4e-16]} {Dmel: FBgn0033716, Den1, Deneddylase 1, [RH, Score=70.5, Expect=3e-14]} {Smed: dd_Smed_v6_10711_0_1, dd_Smed_v6_10711_0_1, [RH, Score=71.6, Expect=4e-15]} {RNA1509_41235} {RNA1310_35410, RNA1509_41235} {RNA1509_41235, RNA815_32992}
15. MligTC455_06947 1605 33.43 Mlig455_016219, Mlig455_054265

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.362

Region-enriched R6: 8.322/0.00000

 0.954 - - - 0.954 - -

Mlig455_016219 {REF} {Length: 1967} {Pfam: PPE family [PF00823.21, score=19.2]} {RNA1509_18974, RNA1509_35153, RNA1509_44922} {RNA1310_20486.2, RNA1509_18974, RNA1509_35153, RNA1509_44922} {RNA1509_18974, RNA1509_35153, RNA1509_44922, RNA815_8735.1}

Mlig455_054265 {REF} {Length: 2060} {RNA1509_35153} {RNA1310_20486.2} {RNA815_8735.1}
16. MligTC455_07789 20 0.42 Mlig455_005378, Mlig455_005439

Neo: -

Age: -

 0.954 - - - 0.954 - -

Mlig455_005378 {REF} {Length: 353} {NoTransDecoderORF} {RNA1509_35184} {RNA1310_92493} {RNA815_18932.1}

Mlig455_005439 {REF} {Length: 1311} {NoTransDecoderORF} {RNA1509_35184} {RNA1310_111953} {RNA815_18932.1}
17. MligTC455_07944 81 1.7 Mlig455_020617

Neo: -

Age: -

Regeneration-enriched R6: 6.368
Regeneration-enriched R5: 6.186

 HES1 0.954 - - - 0.954 - - Mlig455_020617 {REF} {Length: 999} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=50.5]} {Human: ENSG00000114315, HES1, hes family bHLH transcription factor 1, [Score=65.9, Expect=5e-13]} {Mouse: ENSMUSG00000022528, Hes1, hes family bHLH transcription factor 1, [Score=65.5, Expect=4e-13]} {Dmel: FBgn0002735, E(spl)mgamma-HLH, Enhancer of split mgamma, helix-loop-helix, [RH, Score=71.2, Expect=9e-16]} {Celegans: WBGene00003008, lin-22, Lin-22, [RH, Score=55.8, Expect=2e-10]} {Smed: dd_Smed_v6_17332_0_1, dd_Smed_v6_17332_0_1, [RH, Score=53.1, Expect=2e-09]} {RNA1310_141742}
18. MligTC455_19970 173 3.59 Mlig455_034815

Neo: -

Age: -

Region-enriched R6: 4.214/0.00162

 NR1I2 0.954 - - - 0.954 - - Mlig455_034815 {REF} {Length: 2960} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=75.1]} {Human: ENSG00000144852, NR1I2, nuclear receptor subfamily 1 group I member 2, [Score=136, Expect=2e-34]} {Mouse: ENSMUSG00000058756, Thra, thyroid hormone receptor alpha, [Score=129, Expect=9e-33]; ENSMUSG00000022809, Nr1i2, nuclear receptor subfamily 1, group I, member 2, [Score=123, Expect=2e-30]} {Dmel: FBgn0000546, EcR, Ecdysone receptor, [Score=134, Expect=3e-33]} {Celegans: WBGene00000908, daf-12, Nuclear hormone receptor family member daf-12, [RH, Score=132, Expect=1e-32]} {Smed: dd_Smed_v6_11714_0_1, dd_Smed_v6_11714_0_1, [Score=144, Expect=1e-37]} {RNA1509_24283} {RNA1310_5453} {RNA815_10529.1}
19. MligTC455_13686 81 1.69 Mlig455_025201

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_025201 {REF} {Length: 513} {NoTransDecoderORF} {RNA1509_57863} {RNA1310_12861} {RNA815_64064}
20. MligTC455_22940 125 2.6 Mlig455_008414

Neo: -

Age: -

 ERCC5 0.953 - - - 0.953 - - Mlig455_008414 {REF} {Length: 2753} {TRANSSPLICED} {Pfam: XPG I-region [PF00867.20, score=78.0]; 5'-3' exonuclease, C-terminal SAM fold [PF01367.22, score=24.2]} {Human: ENSG00000134899, ERCC5, ERCC excision repair 5, endonuclease, [RH, Score=192, Expect=1e-49]; ENSG00000270181, BIVM-ERCC5, BIVM-ERCC5 readthrough, [RH, Score=192, Expect=1e-49]} {Mouse: ENSMUSG00000026048, Ercc5, excision repair cross-complementing rodent repair deficiency, complementation group 5, [RH, Score=189, Expect=6e-49]} {Dmel: FBgn0002887, mus201, mutagen-sensitive 201, [RH, Score=179, Expect=5e-46]} {Celegans: WBGene00019004, xpg-1, XPG (Xeroderma Pigmentosum group G) DNA repair gene homolog, [RH, Score=105, Expect=6e-23]} {Smed: dd_Smed_v6_10808_0_1, dd_Smed_v6_10808_0_1, [RH, Score=189, Expect=7e-50]} {RNA1509_14172} {RNA1310_4988} {RNA815_6998}
21. MligTC455_29004 1944 40.5 Mlig455_004701

Neo: -

Age: -

Region-specific R6: 7.648

Region-enriched R6: 8.174/0.00000

 ANK1 0.953 - - - 0.953 - - Mlig455_004701 {REF} {Length: 6457} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=167.9]; Ankyrin repeats (many copies) [PF13637.8, score=154.0]; Ankyrin repeat [PF00023.32, score=138.0]; Ankyrin repeats (many copies) [PF13857.8, score=123.4]; Ankyrin repeat [PF13606.8, score=113.7]; Mab-21 protein [PF03281.16, score=30.8]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=170, Expect=3e-43]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=167, Expect=1e-42]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=159, Expect=8e-40]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=160, Expect=2e-40]} {Smed: dd_Smed_v6_2072_0_5, dd_Smed_v6_2072_0_5, [Score=142, Expect=9e-35]} {RNA1509_1418, RNA1509_52877} {RNA1310_194.1, RNA1509_1418} {RNA1509_1418, RNA815_25433}
22. MligTC455_06614 35 0.72 Mlig455_052447

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_052447 {REF} {Length: 869} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_20081} {RNA1310_65601} {RNA815_26807}
23. MligTC455_37998 26 0.55 Mlig455_045732, Mlig455_045786

Neo: -

Age: logFC(26M/2M)=1.008

 PRR9 0.952 - - - 0.952 - -

Mlig455_045732 {REF} {Length: 5496} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=44.7, Expect=3e-06]} {RNA1310_17667} {RNA815_26670}

Mlig455_045786 {REF} {Length: 1887} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=43.5, Expect=5e-06]} {RNA1310_17667} {RNA815_53757}
24. MligTC455_29454 50 1.05 Mlig455_065107

Neo: -

Age: -

 CHRNA10 0.951 - - - 0.951 - - Mlig455_065107 {REF} {Length: 3864} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=79.6]} {Human: ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=64.7, Expect=5e-11]; ENSG00000160716, CHRNB2, cholinergic receptor nicotinic beta 2 subunit, [Score=61.6, Expect=5e-10]} {Mouse: ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=71.6, Expect=2e-13]} {Celegans: WBGene00000051, acr-12, AcetylCholine Receptor; Nicotinic acetylcholine receptor-like subunit ACR-12, [Score=56.2, Expect=1e-08]} {Smed: dd_Smed_v6_12146_0_1, dd_Smed_v6_12146_0_1, [Score=74.7, Expect=6e-15]} {RNA1509_57562} {RNA1310_27363} {RNA815_5685.1}
25. MligTC455_52619 109 2.26 Mlig455_024816

Neo: -

Age: Down-Down-Up

 PCF11 0.95 - - - 0.950 - - Mlig455_024816 {REF} {Length: 4120} {Pfam: CID domain [PF04818.15, score=23.9]} {Human: ENSG00000165494, PCF11, PCF11, cleavage and polyadenylation factor subunit, [Score=85.1, Expect=5e-16]} {Mouse: ENSMUSG00000041328, Pcf11, PCF11 cleavage and polyadenylation factor subunit, [Score=89.7, Expect=1e-17]} {Dmel: FBgn0264962, Pcf11, Protein 1 of cleavage and polyadenylation factor 1, [Score=66.2, Expect=1e-10]} {Celegans: WBGene00020092, pcf-11, Polyadenylation and cleavage factor homolog 11, [Score=58.2, Expect=2e-08]} {Smed: dd_Smed_v6_3280_0_1, dd_Smed_v6_3280_0_1, [Score=92.8, Expect=4e-19]} {RNA1509_14664} {RNA1310_4848.1} {RNA815_5846}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA