M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44342

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44342 238 4.95 Mlig455_028558, Mlig455_064747

Neo: -

Age: -

 SENP8

Mlig455_028558 {REF} {Length: 1322} {TRANSSPLICED} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=34.9]} {Human: ENSG00000166192, SENP8, SUMO peptidase family member, NEDD8 specific, [RH, Score=78.2, Expect=5e-17]} {Mouse: ENSMUSG00000051705, Senp8, SUMO/sentrin specific peptidase 8, [RH, Score=75.5, Expect=4e-16]} {Dmel: FBgn0033716, Den1, Deneddylase 1, [RH, Score=70.5, Expect=3e-14]} {Smed: dd_Smed_v6_10711_0_1, dd_Smed_v6_10711_0_1, [RH, Score=71.6, Expect=4e-15]} {RNA1509_41235} {RNA1310_35410} {RNA815_32992}

Mlig455_064747 {REF} {Length: 1237} {TRANSSPLICED} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=35.5]} {Human: ENSG00000166192, SENP8, SUMO peptidase family member, NEDD8 specific, [RH, Score=78.2, Expect=5e-17]} {Mouse: ENSMUSG00000051705, Senp8, SUMO/sentrin specific peptidase 8, [RH, Score=75.5, Expect=4e-16]} {Dmel: FBgn0033716, Den1, Deneddylase 1, [RH, Score=70.5, Expect=3e-14]} {Smed: dd_Smed_v6_10711_0_1, dd_Smed_v6_10711_0_1, [RH, Score=71.6, Expect=4e-15]} {RNA1509_41235} {RNA1310_35410, RNA1509_41235} {RNA1509_41235, RNA815_32992}

Cumulative graph for MligTC455_44342

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.16 2.8 0.57133 1.00000
RegionR2 0.186 2.8 0.85107 1.00000
RegionR3 -0.337 2.8 0.66654 1.00000
RegionR4 0.067 2.8 0.93416 1.00000
RegionR5 0.354 2.8 0.59505 0.95302
RegionR6 0.392 2.8 0.59939 1.00000
RegionR7 -0.341 2.8 0.72039 1.00000
RegionR8 0.839 2.8 0.40000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.968 2.8 0.53368 1.00000
RegenerationR2 -2.758 2.8 0.00726 0.13540
RegenerationR3 0.029 2.8 0.97583 1.00000
RegenerationR4 0.225 2.8 0.79465 0.98487
RegenerationR5 -0.634 2.8 0.44927 0.83057
RegenerationR6 -0.29 2.8 0.75539 0.95477
RegenerationBL 1.2 2.8 0.16106 0.48132
RegenerationTP -1.042 2.8 0.37122 0.80884


Genes with expression patterns similar to MligTC455_44342

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44342 238 4.95 Mlig455_028558, Mlig455_064747

Neo: -

Age: -

 SENP8 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_028558 {REF} {Length: 1322} {TRANSSPLICED} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=34.9]} {Human: ENSG00000166192, SENP8, SUMO peptidase family member, NEDD8 specific, [RH, Score=78.2, Expect=5e-17]} {Mouse: ENSMUSG00000051705, Senp8, SUMO/sentrin specific peptidase 8, [RH, Score=75.5, Expect=4e-16]} {Dmel: FBgn0033716, Den1, Deneddylase 1, [RH, Score=70.5, Expect=3e-14]} {Smed: dd_Smed_v6_10711_0_1, dd_Smed_v6_10711_0_1, [RH, Score=71.6, Expect=4e-15]} {RNA1509_41235} {RNA1310_35410} {RNA815_32992}

Mlig455_064747 {REF} {Length: 1237} {TRANSSPLICED} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=35.5]} {Human: ENSG00000166192, SENP8, SUMO peptidase family member, NEDD8 specific, [RH, Score=78.2, Expect=5e-17]} {Mouse: ENSMUSG00000051705, Senp8, SUMO/sentrin specific peptidase 8, [RH, Score=75.5, Expect=4e-16]} {Dmel: FBgn0033716, Den1, Deneddylase 1, [RH, Score=70.5, Expect=3e-14]} {Smed: dd_Smed_v6_10711_0_1, dd_Smed_v6_10711_0_1, [RH, Score=71.6, Expect=4e-15]} {RNA1509_41235} {RNA1310_35410, RNA1509_41235} {RNA1509_41235, RNA815_32992}
2. MligTC455_17345 53 1.1 Mlig455_019214

Neo: -

Age: -

 CCDC149 1.687 - - - 0.955 - 0.732 Mlig455_019214 {REF} {Length: 3452} {Pfam: Uncharacterized coiled-coil protein (DUF2353) [PF09789.11, score=260.8]} {Human: ENSG00000181982, CCDC149, coiled-coil domain containing 149, [RH, Score=177, Expect=3e-48]} {Mouse: ENSMUSG00000045790, Ccdc149, coiled-coil domain containing 149, [RH, Score=174, Expect=2e-47]} {Dmel: FBgn0038330, CG14868, [RH, Score=149, Expect=1e-38]} {Celegans: WBGene00009258, ccdc-149, Coiled-coil domain-containing protein 149, [RH, Score=88.6, Expect=8e-19]} {Smed: dd_Smed_v6_6893_0_2, dd_Smed_v6_6893_0_2, [RH, Score=216, Expect=4e-64]} {RNA1509_45601} {RNA1310_11651} {RNA815_33141}
3. MligTC455_35637 73 1.51 Mlig455_040909

Neo: -

Age: Down-Up-Down

 MAP4K3 0.985 - - - 0.985 - - Mlig455_040909 {REF} {Length: 2541} {Pfam: Protein kinase domain [PF00069.27, score=71.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=48.3]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=18.4]} {Human: ENSG00000011566, MAP4K3, mitogen-activated protein kinase kinase kinase kinase 3, [Score=92.4, Expect=1e-19]} {Mouse: ENSMUSG00000024242, Map4k3, mitogen-activated protein kinase kinase kinase kinase 3, [Score=91.3, Expect=2e-19]; ENSMUSG00000021108, Prkch, protein kinase C, eta, [Score=88.6, Expect=1e-18]} {Dmel: FBgn0004784, inaC, inactivation no afterpotential C, [Score=91.3, Expect=9e-20]} {Celegans: WBGene00004032, pkc-1, Protein kinase C-like 1B, [Score=84.7, Expect=8e-18]} {Smed: dd_Smed_v6_11674_0_1, dd_Smed_v6_11674_0_1, [Score=90.5, Expect=9e-20]} {RNA1509_45033} {RNA1310_55120, RNA1509_45033} {RNA1509_45033, RNA815_54563}
4. MligTC455_08416 34 0.71 Mlig455_017032

Neo: -

Age: -

 0.979 - - - 0.979 - - Mlig455_017032 {REF} {Length: 1293} {NoTransDecoderORF}
5. MligTC455_19633 19 0.41 Mlig455_016139

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_016139 {REF} {Length: 1725} {RNA1509_45988} {RNA1310_31071.1, RNA1509_45988} {RNA1509_45988, RNA815_44017}
6. MligTC455_20334 70 1.45 Mlig455_011023, Mlig455_015469

Neo: Germline

Age: Up-Down-Up, logFC(26M/2M)=0.390

 0.973 - - - - 0.973 -

Mlig455_011023 {REF} {Length: 3103} {RNA1509_50783, RNA1509_53062} {RNA1310_2608, RNA1509_50783, RNA1509_53062} {RNA1509_50783, RNA1509_53062, RNA815_1620}

Mlig455_015469 {REF} {Length: 3242} {RNA1509_53062} {RNA1310_2608} {RNA815_1620}
7. MligTC455_43584 142 2.97 Mlig455_032253

Neo: -

Age: -

 0.972 - - - 0.972 - - Mlig455_032253 {REF} {Length: 1863} {Pfam: Dynein light chain type 1 [PF01221.20, score=60.3]; Ground-like domain [PF04155.20, score=21.2]} {Smed: dd_Smed_v6_1881_0_1, dd_Smed_v6_1881_0_1, [Score=48.9, Expect=1e-07]} {RNA1509_23648} {RNA1310_73070} {RNA815_39295}
8. MligTC455_07228 9 0.2 Mlig455_064993

Neo: -

Age: -

 0.969 - - - 0.969 - - Mlig455_064993 {REF} {Length: 689} {RNA1509_39872} {RNA1310_30293}
9. MligTC455_38003 287 5.99 Mlig455_001274, Mlig455_034626

Neo: Irradiation

Age: -

Region-specific R4: 6.825

Region-enriched R4: 3.718/0.00000

Regeneration-upregulated BL: 5.479

Regeneration-enriched BL: 5.479

 0.969 - - - - 0.969 -

Mlig455_001274 {REF} {Length: 446} {NoTransDecoderORF} {RNA1509_32781} {RNA1310_49317} {RNA815_28313}

Mlig455_034626 {REF} {Length: 2763} {RNA1509_32781} {RNA1310_49317} {RNA815_28313}
10. MligTC455_57326 9 0.19 Mlig455_037925

Neo: -

Age: -

 0.969 - - - 0.969 - - Mlig455_037925 {REF} {Length: 326} {NoTransDecoderORF}
11. MligTC455_00760 14 0.3 Mlig455_016164

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_016164 {REF} {Length: 1102} {RNA1310_117525} {RNA815_52441}
12. MligTC455_34974 179 3.74 Mlig455_065975

Neo: Irradiation

Age: -

 UCKL1 0.967 - - - - 0.967 - Mlig455_065975 {REF} {Length: 2874} {TRANSSPLICED} {Pfam: Uracil phosphoribosyltransferase [PF14681.8, score=201.0]; Phosphoribulokinase / Uridine kinase family [PF00485.20, score=186.5]; AAA domain [PF13238.8, score=25.0]; AAA domain [PF13671.8, score=22.7]; Chloramphenicol phosphotransferase-like protein [PF07931.14, score=20.1]} {Human: ENSG00000198276, UCKL1, uridine-cytidine kinase 1 like 1, [Score=525, Expect=0.0]} {Mouse: ENSMUSG00000089917, Uckl1, uridine-cytidine kinase 1-like 1, [Score=524, Expect=0.0]} {Dmel: FBgn0022029, l(2)k01209, lethal (2) k01209, [Score=507, Expect=1e-175]} {Celegans: WBGene00008948, F19B6.1, Uridine kinase, [RH, Score=493, Expect=3e-170]} {Smed: dd_Smed_v6_2901_0_1, dd_Smed_v6_2901_0_1, [Score=507, Expect=1e-176]} {RNA1509_17109, RNA1509_51186} {RNA1310_13278, RNA1509_17109, RNA1509_51186} {RNA1509_17109, RNA1509_51186, RNA815_5837}
13. MligTC455_04371 9 0.19 Mlig455_043555

Neo: -

Age: -

 0.966 - - - 0.966 - - Mlig455_043555 {REF} {Length: 702} {NoTransDecoderORF} {RNA1310_32636} {RNA815_43957}
14. MligTC455_07132 192 4 Mlig455_016153, Mlig455_029293, Mlig455_043294, Mlig455_044231, Mlig455_044250, Mlig455_047131

Neo: Germline

Age: -

 0.964 - - - - 0.964 -

Mlig455_016153 {REF} {Length: 222} {NoTransDecoderORF} {RNA1310_143360} {RNA815_30147}

Mlig455_029293 {REF} {Length: 1363} {RNA1509_12139} {RNA1310_44327} {RNA815_57457}

Mlig455_043294 {REF} {Length: 414} {NoTransDecoderORF} {RNA1509_12139} {RNA1310_15721} {RNA815_30147}

Mlig455_044231 {REF} {Length: 848} {RNA1509_12139} {RNA1310_14234} {RNA815_30147}

Mlig455_044250 {REF} {Length: 829} {RNA1509_12139} {RNA1310_14234} {RNA815_30147}

Mlig455_047131 {REF} {Length: 601} {RNA1310_44327} {RNA815_30147}
15. MligTC455_39891 338 7.04 Mlig455_023376, Mlig455_046955

Neo: -

Age: -

 HIRA 0.964 - - - - - 0.964

Mlig455_023376 {REF} {Length: 3916} {TRANSSPLICED} {Pfam: TUP1-like enhancer of split [PF07569.13, score=92.1]; WD domain, G-beta repeat [PF00400.34, score=63.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=37.6]; HIRA B motif [PF09453.12, score=18.5]} {Human: ENSG00000100084, HIRA, histone cell cycle regulator, [Score=449, Expect=3e-140]} {Mouse: ENSMUSG00000022702, Hira, histone cell cycle regulator, [Score=433, Expect=9e-135]} {Dmel: FBgn0022786, Hira, [RH, Score=361, Expect=7e-108]} {Celegans: WBGene00019627, K10D2.1, Protein HIRA homolog, [RH, Score=216, Expect=5e-58]} {Smed: dd_Smed_v6_11365_0_1, dd_Smed_v6_11365_0_1, [RH, Score=292, Expect=1e-83]} {RNA1509_21457} {RNA1310_15050, RNA1509_21457} {RNA1509_21457, RNA815_26394}

Mlig455_046955 {REF} {Length: 3903} {TRANSSPLICED} {Pfam: TUP1-like enhancer of split [PF07569.13, score=95.6]; WD domain, G-beta repeat [PF00400.34, score=64.0]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=37.6]; HIRA B motif [PF09453.12, score=18.5]} {Human: ENSG00000100084, HIRA, histone cell cycle regulator, [RH, Score=452, Expect=8e-142]} {Mouse: ENSMUSG00000022702, Hira, histone cell cycle regulator, [Score=434, Expect=8e-135]} {Dmel: FBgn0022786, Hira, [RH, Score=364, Expect=5e-109]} {Celegans: WBGene00019627, K10D2.1, Protein HIRA homolog, [RH, Score=215, Expect=1e-57]} {Smed: dd_Smed_v6_11365_0_1, dd_Smed_v6_11365_0_1, [RH, Score=294, Expect=4e-84]} {RNA1509_21457, RNA1509_58633} {RNA1310_15050, RNA1509_58633} {RNA1509_58633, RNA815_26394}
16. MligTC455_41398 105 2.19 Mlig455_059987

Neo: -

Age: -

 0.964 - - - - - 0.964 Mlig455_059987 {REF} {Length: 5243} {RNA1509_22803} {RNA1310_4729.2} {RNA815_1614}
17. MligTC455_44211 452 9.41 Mlig455_009049

Neo: Int S/G2/M

Age: -

 0.964 - - - - - 0.964 Mlig455_009049 {REF} {Length: 1286} {TRANSSPLICED} {Pfam: RFX5 N-terminal domain [PF18326.3, score=25.0]} {RNA1509_27379} {RNA1310_26623, RNA1509_27379} {RNA1509_27379, RNA815_11463}
18. MligTC455_48048 304 6.34 Mlig455_065143

Neo: Irradiation

Age: Up-Down-Down

 0.964 - - - - - 0.964 Mlig455_065143 {REF} {Length: 4336} {TRANSSPLICED} {RNA1509_46828} {RNA1310_6402.1, RNA1509_46828} {RNA1509_46828, RNA815_12174}
19. MligTC455_31796 47 0.99 Mlig455_026275

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.526

 CABP1 0.963 - - - - 0.963 - Mlig455_026275 {REF} {Length: 3022} {Pfam: EF hand [PF00036.34, score=74.1]; EF hand [PF13202.8, score=73.8]; EF-hand domain pair [PF13499.8, score=69.8]; EF-hand domain [PF13405.8, score=68.8]; EF-hand domain pair [PF13833.8, score=68.1]} {Human: ENSG00000157782, CABP1, calcium binding protein 1, [Score=82.8, Expect=2e-16]} {Mouse: ENSMUSG00000029544, Cabp1, calcium binding protein 1, [Score=83.2, Expect=1e-16]} {Celegans: WBGene00018376, F43C9.2, [Score=54.3, Expect=2e-08]} {Smed: dd_Smed_v6_11942_0_1, dd_Smed_v6_11942_0_1, [Score=76.3, Expect=4e-16]} {RNA1509_26120} {RNA1310_31998} {RNA815_18772}
20. MligTC455_39358 70 1.46 Mlig455_052566, Mlig455_065351

Neo: Germline

Age: Down-Down-Down, logFC(26M/2M)=-1.082

 0.963 - - - - 0.963 -

Mlig455_052566 {REF} {Length: 1175} {NoTransDecoderORF} {RNA1310_50540.1}

Mlig455_065351 {REF} {Length: 1133} {NoTransDecoderORF} {RNA1310_50540.1}
21. MligTC455_10099 94 1.95 Mlig455_038684, Mlig455_038698

Neo: Germline

Age: Down-Down-Down, logFC(26M/2M)=-0.820

Region-specific R4: 6.728

Region-enriched R4: 6.187/0.00013

 0.962 - - - - 0.962 -

Mlig455_038684 {REF} {Length: 1407} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=26.9]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=105, Expect=4e-26]} {RNA1509_30575} {RNA1310_32071.3} {RNA815_13547.1}

Mlig455_038698 {REF} {Length: 1405} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=26.9]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=105, Expect=4e-26]} {RNA1509_30575} {RNA1310_32071.3} {RNA815_13547.1}
22. MligTC455_07789 20 0.42 Mlig455_005378, Mlig455_005439

Neo: -

Age: -

 0.961 - - - 0.961 - -

Mlig455_005378 {REF} {Length: 353} {NoTransDecoderORF} {RNA1509_35184} {RNA1310_92493} {RNA815_18932.1}

Mlig455_005439 {REF} {Length: 1311} {NoTransDecoderORF} {RNA1509_35184} {RNA1310_111953} {RNA815_18932.1}
23. MligTC455_15106 18 0.37 Mlig455_026124

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_026124 {REF} {Length: 1159}
24. MligTC455_20613 183 3.81 Mlig455_030457

Neo: Int S/G2/M

Age: -

Region-enriched R5: 2.203/0.02582

 ERCC6L 0.961 - - - - - 0.961 Mlig455_030457 {REF} {Length: 4294} {TRANSSPLICED} {Pfam: SNF2-related domain [PF00176.25, score=194.8]; Helicase conserved C-terminal domain [PF00271.33, score=68.3]; Type III restriction enzyme, res subunit [PF04851.17, score=29.1]} {Human: ENSG00000186871, ERCC6L, ERCC excision repair 6 like, spindle assembly checkpoint helicase, [RH, Score=675, Expect=0.0]} {Mouse: ENSMUSG00000051220, Ercc6l, excision repair cross-complementing rodent repair deficiency complementation group 6 like, [RH, Score=696, Expect=0.0]} {Dmel: FBgn0002989, okr, okra, [Score=267, Expect=2e-75]} {Celegans: WBGene00004204, swsn-4, SWI/SNF nucleosome remodeling complex component; SWI2/SNF2-like protein, [Score=248, Expect=1e-66]} {Smed: dd_Smed_v6_11583_0_1, dd_Smed_v6_11583_0_1, [RH, Score=599, Expect=0.0]} {RNA1509_15313} {RNA1310_2005, RNA1509_15313} {RNA1509_15313, RNA815_13735}
25. MligTC455_17649 19 0.4 Mlig455_035862, Mlig455_035900

Neo: -

Age: -

 0.959 - - - - 0.959 -

Mlig455_035862 {REF} {Length: 1528} {RNA1310_61164}

Mlig455_035900 {REF} {Length: 2152} {RNA1310_61164}
26. MligTC455_49289 402 8.37 Mlig455_009864

Neo: Neoblast, stringent

Age: -

 0.959 - - - - - 0.959 Mlig455_009864 {REF} {Length: 2032} {TRANSSPLICED} {RNA1509_12825, RNA1509_19362, RNA1509_60056} {RNA1310_24631, RNA1509_12825, RNA1509_19362, RNA1509_60056} {RNA1509_12825, RNA1509_19362, RNA1509_60056, RNA815_4319.3}
27. MligTC455_05743 198 4.13 Mlig455_024002

Neo: -

Age: -

Region-enriched R4: 4.046/0.00272

 0.958 - - - - 0.958 - Mlig455_024002 {REF} {Length: 700} {NoTransDecoderORF} {RNA1509_50314} {RNA1310_20430.2} {RNA815_21116}
28. MligTC455_10987 102 2.12 Mlig455_004615

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 5.541

Region-enriched R4: 3.332/0.00562

 0.958 - - - - 0.958 - Mlig455_004615 {REF} {Length: 1078} {RNA1509_31347} {RNA1310_47669} {RNA815_27018}
29. MligTC455_11986 13 0.27 Mlig455_026059, Mlig455_037303

Neo: -

Age: Down-Up-Down

 SPEF1 0.958 - - - 0.958 - -

Mlig455_026059 {REF} {Length: 859} {Pfam: CH-like domain in sperm protein [PF06294.13, score=108.1]; CAMSAP CH domain [PF11971.10, score=50.0]} {Human: ENSG00000101222, SPEF1, sperm flagellar 1, [Score=152, Expect=1e-44]} {Mouse: ENSMUSG00000027329, Spef1, sperm flagellar 1, [Score=156, Expect=2e-46]} {Dmel: FBgn0030722, CG12395, [RH, Score=71.2, Expect=3e-14]} {Smed: dd_Smed_v6_5648_0_1, dd_Smed_v6_5648_0_1, [Score=243, Expect=4e-81]} {RNA1509_53151} {RNA1310_9792} {RNA815_15789.1}

Mlig455_037303 {REF} {Length: 931} {Pfam: CH-like domain in sperm protein [PF06294.13, score=109.0]; CAMSAP CH domain [PF11971.10, score=50.3]} {Human: ENSG00000101222, SPEF1, sperm flagellar 1, [Score=120, Expect=7e-33]} {Mouse: ENSMUSG00000027329, Spef1, sperm flagellar 1, [Score=122, Expect=4e-34]; ENSMUSG00000073795, 6430531B16Rik, RIKEN cDNA 6430531B16 gene, [Score=118, Expect=2e-32]} {Dmel: FBgn0036029, CG16719, [Score=61.2, Expect=5e-11]} {Smed: dd_Smed_v6_5648_0_1, dd_Smed_v6_5648_0_1, [Score=192, Expect=1e-61]} {RNA1509_53151} {RNA1310_9792} {RNA815_15789.1}
30. MligTC455_54144 568 11.83 Mlig455_017763

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 6.298

Region-enriched R4: 4.718/0.00000

Regeneration-downregulated R4: -3.186

Regeneration-depleted R4: -3.186

 0.958 - - - - 0.958 - Mlig455_017763 {REF} {Length: 775} {RNA1509_14026, RNA1509_14108} {RNA1310_53900.1, RNA1509_14026, RNA1509_14108} {RNA1509_14026, RNA1509_14108, RNA815_29582.1}
31. MligTC455_08126 61 1.28 Mlig455_019453

Neo: Germline

Age: Up-Down-Down

Region-enriched R4: 4.567/0.00165

 0.957 - - - - 0.957 - Mlig455_019453 {REF} {Length: 620} {RNA1509_54069} {RNA1310_34680.2} {RNA815_15951}
32. MligTC455_05663 15 0.31 Mlig455_047269

Neo: Int S/G2/M

Age: -

 0.955 - - - 0.955 - - Mlig455_047269 {REF} {Length: 842} {NoTransDecoderORF} {RNA1310_133680}
33. MligTC455_11960 15 0.3 Mlig455_048902

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_048902 {REF} {Length: 522} {NoTransDecoderORF} {RNA1509_8915} {RNA1310_29109} {RNA815_8638}
34. MligTC455_01695 25 0.52 Mlig455_015208

Neo: -

Age: -

 0.954 - - - 0.954 - - Mlig455_015208 {REF} {Length: 605} {NoTransDecoderORF} {RNA1509_45595} {RNA1310_13430.1} {RNA815_343.1}
35. MligTC455_19143 186 3.86 Mlig455_040116

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_040116 {REF} {Length: 6995} {Smed: dd_Smed_v6_11519_0_1, dd_Smed_v6_11519_0_1, [RH, Score=600, Expect=0.0]} {RNA1509_43828, RNA1509_5002} {RNA1310_824.1, RNA1509_43828} {RNA1509_43828, RNA815_15829}
36. MligTC455_19952 311 6.48 Mlig455_062903

Neo: Germline

Age: -

Region-specific R4: 6.665

Region-enriched R4: 4.009/0.00000

 0.954 - - - - 0.954 - Mlig455_062903 {REF} {Length: 2171} {RNA1509_30690, RNA1509_30715} {RNA1310_26336, RNA1509_30690, RNA1509_30715} {RNA1509_30690, RNA1509_30715, RNA815_23771}
37. MligTC455_28869 12 0.24 Mlig455_067293

Neo: -

Age: Up-Down-Down

 0.954 - - - - 0.954 - Mlig455_067293 {REF} {Length: 4364} {Pfam: Integrase core domain [PF00665.28, score=29.5]} {RNA1310_31143.1} {RNA815_25309}
38. MligTC455_37690 585 12.18 Mlig455_035372

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.500

Region-specific R5: 2.410

Region-enriched R5: 2.318/0.00000

 TRMT112 0.954 - - - - - 0.954 Mlig455_035372 {REF} {Length: 1036} {TRANSSPLICED} {Pfam: Trm112p-like protein [PF03966.18, score=52.8]} {Human: ENSG00000173113, TRMT112, tRNA methyltransferase subunit 11-2, [RH, Score=115, Expect=1e-33]} {Mouse: ENSMUSG00000038812, Trmt112, tRNA methyltransferase 11-2, [RH, Score=125, Expect=1e-37]} {Dmel: FBgn0037061, CG12975, [RH, Score=110, Expect=7e-32]} {Celegans: WBGene00007312, C04H5.1, Multifunctional methyltransferase subunit TRM112-like protein, [RH, Score=89.4, Expect=8e-24]} {Smed: dd_Smed_v6_6012_0_1, dd_Smed_v6_6012_0_1, [RH, Score=129, Expect=2e-39]} {RNA1509_15429, RNA1509_15929, RNA1509_40149} {RNA1310_32046.1, RNA1509_15429, RNA1509_15929, RNA1509_40149} {RNA1509_15429, RNA1509_15929, RNA1509_40149, RNA815_14564.1}
39. MligTC455_22530 471 9.81 Mlig455_047182

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.347

 RAD54L 0.953 - - - - - 0.953 Mlig455_047182 {REF} {Length: 3233} {TRANSSPLICED} {Pfam: SNF2-related domain [PF00176.25, score=206.9]; Helicase conserved C-terminal domain [PF00271.33, score=52.5]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=49.2]; Rad54 N terminal [PF08658.12, score=30.4]; Type III restriction enzyme, res subunit [PF04851.17, score=29.5]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=22.6]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=18.5]} {Human: ENSG00000085999, RAD54L, RAD54 like, [RH, Score=933, Expect=0.0]} {Mouse: ENSMUSG00000028702, Rad54l, RAD54 like (S. cerevisiae), [RH, Score=934, Expect=0.0]} {Dmel: FBgn0002989, okr, okra, [RH, Score=797, Expect=0.0]} {Celegans: WBGene00004298, rad-54, [RH, Score=804, Expect=0.0]} {Smed: dd_Smed_v6_15532_0_1, dd_Smed_v6_15532_0_1, [RH, Score=950, Expect=0.0]} {RNA1509_21103} {RNA1310_7218, RNA1509_21103} {RNA1509_21103, RNA815_1852.1}
40. MligTC455_32371 1678 34.95 Mlig455_050450

Neo: -

Age: -

 ERG 0.953 - - - 0.953 - - Mlig455_050450 {REF} {Length: 2541} {Pfam: Ets-domain [PF00178.24, score=86.8]} {Human: ENSG00000157554, ERG, ERG, ETS transcription factor, [Score=87.0, Expect=3e-18]; ENSG00000151702, FLI1, Fli-1 proto-oncogene, ETS transcription factor, [Score=85.1, Expect=2e-18]; ENSG00000010030, ETV7, ETS variant 7, [Score=84.7, Expect=3e-18]} {Mouse: ENSMUSG00000040732, Erg, ETS transcription factor, [Score=88.2, Expect=8e-19]; ENSMUSG00000016087, Fli1, Friend leukemia integration 1, [Score=85.1, Expect=9e-18]} {Dmel: FBgn0005658, Ets65A, Ets at 65A, [Score=86.7, Expect=3e-19]} {Celegans: WBGene00016600, ets-5, ETS class transcription factor, [Score=85.9, Expect=1e-19]} {Smed: dd_Smed_v6_14611_0_1, dd_Smed_v6_14611_0_1, [Score=80.9, Expect=1e-16]} {RNA1509_20922, RNA1509_37627, RNA1509_43568} {RNA1310_28519.1, RNA1509_20922, RNA1509_37627, RNA1509_43568} {RNA1509_20922, RNA1509_37627, RNA1509_43568, RNA815_12731.1}
41. MligTC455_22870 9 0.18 Mlig455_001213

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_001213 {REF} {Length: 948} {RNA1509_19830} {RNA1310_53764} {RNA815_44491}
42. MligTC455_25132 223 4.65 Mlig455_038129, Mlig455_039796

Neo: -

Age: Down-Up-Up

 NME6 0.952 - - - - 0.952 -

Mlig455_038129 {REF} {Length: 989} {TRANSSPLICED} {Pfam: Nucleoside diphosphate kinase [PF00334.21, score=93.6]} {Human: ENSG00000172113, NME6, NME/NM23 nucleoside diphosphate kinase 6, [Score=110, Expect=1e-30]} {Mouse: ENSMUSG00000032478, Nme6, NME/NM23 nucleoside diphosphate kinase 6, [Score=111, Expect=3e-31]} {Dmel: FBgn0030573, nmdyn-D6, [RH, Score=118, Expect=2e-34]} {Smed: dd_Smed_v6_12132_0_1, dd_Smed_v6_12132_0_1, [RH, Score=142, Expect=5e-44]} {RNA1509_58743} {RNA1310_32348.1, RNA1509_58743} {RNA1509_58743, RNA815_20328}

Mlig455_039796 {REF} {Length: 1048} {Pfam: Nucleoside diphosphate kinase [PF00334.21, score=94.7]} {Human: ENSG00000172113, NME6, NME/NM23 nucleoside diphosphate kinase 6, [Score=112, Expect=5e-31]} {Mouse: ENSMUSG00000032478, Nme6, NME/NM23 nucleoside diphosphate kinase 6, [Score=111, Expect=4e-31]} {Dmel: FBgn0030573, nmdyn-D6, [RH, Score=120, Expect=6e-35]} {Smed: dd_Smed_v6_12132_0_1, dd_Smed_v6_12132_0_1, [RH, Score=142, Expect=7e-44]} {RNA1509_58743} {RNA1310_32348.1} {RNA815_20328}
43. MligTC455_32192 33 0.7 Mlig455_005706

Neo: -

Age: logFC(26M/2M)=0.465

 0.952 - - - 0.952 - - Mlig455_005706 {REF} {Length: 1675} {TRANSSPLICED} {Pfam: Porphyromonas-type peptidyl-arginine deiminase [PF04371.17, score=74.0]} {RNA1509_24742} {RNA1310_26295} {RNA815_29609}
44. MligTC455_18440 34 0.72 Mlig455_020380

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=3.584

 0.95 - - - 0.950 - - Mlig455_020380 {REF} {Length: 1793} {Pfam: N-terminal domain on NACHT_NTPase and P-loop NTPases [PF17107.7, score=19.3]} {RNA1310_98420.1} {RNA815_27771}
45. MligTC455_21528 367 7.64 Mlig455_015393, Mlig455_015396

Neo: Int S/G2/M

Age: -

 ASCC3 0.95 - - - - - 0.950

Mlig455_015393 {REF} {Length: 8035} {Pfam: Sec63 Brl domain [PF02889.18, score=439.6]; DEAD/DEAH box helicase [PF00270.31, score=178.1]; Type III restriction enzyme, res subunit [PF04851.17, score=81.0]; Helicase conserved C-terminal domain [PF00271.33, score=48.8]; AAA domain [PF13401.8, score=30.9]; AAA domain [PF13604.8, score=30.2]; AAA domain [PF13245.8, score=22.7]} {Human: ENSG00000112249, ASCC3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2188, Expect=0.0]} {Mouse: ENSMUSG00000038774, Ascc3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2186, Expect=0.0]} {Dmel: FBgn0038344, obe, obelus, [RH, Score=1927, Expect=0.0]} {Celegans: WBGene00013189, Y54E2A.4, [RH, Score=1679, Expect=0.0]} {Smed: dd_Smed_v6_11140_0_1, dd_Smed_v6_11140_0_1, [RH, Score=1927, Expect=0.0]} {RNA1509_2241, RNA1509_55312} {RNA1310_438, RNA1509_2241, RNA1509_55312} {RNA1509_2241, RNA1509_55312, RNA815_146.1}

Mlig455_015396 {REF} {Length: 7701} {Pfam: Sec63 Brl domain [PF02889.18, score=440.8]; DEAD/DEAH box helicase [PF00270.31, score=177.4]; Type III restriction enzyme, res subunit [PF04851.17, score=80.9]; Helicase conserved C-terminal domain [PF00271.33, score=48.4]; AAA domain [PF13401.8, score=30.9]; AAA domain [PF13604.8, score=30.1]; AAA domain [PF13245.8, score=22.2]} {Human: ENSG00000112249, ASCC3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2188, Expect=0.0]} {Mouse: ENSMUSG00000038774, Ascc3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2187, Expect=0.0]} {Dmel: FBgn0038344, obe, obelus, [RH, Score=1927, Expect=0.0]} {Celegans: WBGene00013189, Y54E2A.4, [RH, Score=1677, Expect=0.0]} {Smed: dd_Smed_v6_11140_0_1, dd_Smed_v6_11140_0_1, [RH, Score=1929, Expect=0.0]} {RNA1509_2241} {RNA1310_438} {RNA815_146.1}
46. MligTC455_45874 2616 54.5 Mlig455_025351, Mlig455_025395

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.206/0.01823

Regeneration-enriched BL: 2.077
Regeneration-enriched R6: 1.475

 DHX15 0.95 - - - - - 0.950

Mlig455_025351 {REF} {Length: 3219} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=76.1]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=54.1]; Helicase conserved C-terminal domain [PF00271.33, score=44.9]; DEAD/DEAH box helicase [PF00270.31, score=32.8]; AAA domain [PF13245.8, score=20.0]; AAA domain [PF13401.8, score=18.9]} {Human: ENSG00000109606, DHX15, DEAH-box helicase 15, [Score=1049, Expect=0.0]} {Mouse: ENSMUSG00000029169, Dhx15, DEAH (Asp-Glu-Ala-His) box polypeptide 15, [Score=1036, Expect=0.0]} {Dmel: FBgn0033160, Dhx15, DEAH-box helicase 15, [Score=1030, Expect=0.0]} {Celegans: WBGene00018967, ddx-15, Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15, [Score=941, Expect=0.0]} {Smed: dd_Smed_v6_2043_0_1, dd_Smed_v6_2043_0_1, [Score=1092, Expect=0.0]} {RNA1509_2301} {RNA1310_4345.1} {RNA815_408.1}

Mlig455_025395 {REF} {Length: 2952} {TRANSSPLICED} {Pfam: Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=82.3]; Helicase associated domain (HA2) [PF04408.25, score=80.5]; Helicase conserved C-terminal domain [PF00271.33, score=44.8]; DEAD/DEAH box helicase [PF00270.31, score=32.7]; AAA domain [PF13245.8, score=20.0]; AAA domain [PF13401.8, score=18.8]} {Human: ENSG00000109606, DHX15, DEAH-box helicase 15, [RH, Score=1192, Expect=0.0]} {Mouse: ENSMUSG00000029169, Dhx15, DEAH (Asp-Glu-Ala-His) box polypeptide 15, [RH, Score=1191, Expect=0.0]} {Dmel: FBgn0033160, Dhx15, DEAH-box helicase 15, [RH, Score=1186, Expect=0.0]} {Celegans: WBGene00018967, ddx-15, Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15, [RH, Score=1094, Expect=0.0]} {Smed: dd_Smed_v6_2043_0_1, dd_Smed_v6_2043_0_1, [RH, Score=1235, Expect=0.0]} {RNA1509_2301} {RNA1310_4345.2} {RNA815_408.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA