M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_12042

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_12042 47 0.98 Mlig455_070230

Neo: -

Age: Down-Down-Up

 SVOP Mlig455_070230 {REF} {Length: 1901} {Pfam: Major Facilitator Superfamily [PF07690.18, score=107.7]; Sugar (and other) transporter [PF00083.26, score=94.4]; MFS/sugar transport protein [PF13347.8, score=21.5]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=326, Expect=5e-105]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=320, Expect=1e-102]} {Dmel: FBgn0034956, CG4324, [Score=262, Expect=2e-81]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=288, Expect=4e-91]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=391, Expect=1e-131]} {RNA1310_43061} {RNA815_35117}

Cumulative graph for MligTC455_12042

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.158 1.185 1.00000 1.00000
RegionR2 0.169 1.185 0.52744 0.89961
RegionR3 0.117 1.185 0.51241 1.00000
RegionR4 -0.476 1.185 1.00000 1.00000
RegionR5 -1.393 1.185 1.00000 1.00000
RegionR6 2.214 1.185 0.03878 0.36939
RegionR7 2.711 1.185 0.03754 0.37076
RegionR8 -1.183 1.185 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.247 1.185 1.00000 1.00000
RegenerationR2 -0.72 1.185 0.47745 0.86192
RegenerationR3 0.599 1.185 0.69094 0.94459
RegenerationR4 1.319 1.185 0.16061 0.59319
RegenerationR5 1.362 1.185 0.19398 0.62562
RegenerationR6 -1.633 1.185 0.10742 0.40565
RegenerationBL -1.258 1.185 0.96299 1.00000
RegenerationTP 1.942 1.185 0.44435 0.86354


Genes with expression patterns similar to MligTC455_12042

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_12042 47 0.98 Mlig455_070230

Neo: -

Age: Down-Down-Up

 SVOP 4 - - 1.000 1.000 1.000 1.000 Mlig455_070230 {REF} {Length: 1901} {Pfam: Major Facilitator Superfamily [PF07690.18, score=107.7]; Sugar (and other) transporter [PF00083.26, score=94.4]; MFS/sugar transport protein [PF13347.8, score=21.5]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=326, Expect=5e-105]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=320, Expect=1e-102]} {Dmel: FBgn0034956, CG4324, [Score=262, Expect=2e-81]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=288, Expect=4e-91]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=391, Expect=1e-131]} {RNA1310_43061} {RNA815_35117}
2. MligTC455_07328 26 0.55 Mlig455_058300

Neo: -

Age: -

 1.75 - - - 0.969 - 0.781 Mlig455_058300 {REF} {Length: 429} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_89251}
3. MligTC455_22389 83 1.72 Mlig455_026979

Neo: -

Age: -

 1.736 - - - - 0.982 0.754 Mlig455_026979 {REF} {Length: 1624} {Pfam: PT repeat [PF04886.14, score=28.2]}
4. MligTC455_25790 799 16.65 Mlig455_060350

Neo: -

Age: Down-Up-Down

Region-enriched R7: 2.014/0.02263

 1.714 - - - - 0.955 0.759 Mlig455_060350 {REF} {Length: 1236} {NoTransDecoderORF} {RNA1509_22707} {RNA1310_30534} {RNA815_24119.1}
5. MligTC455_52251 250 5.22 Mlig455_011225

Neo: -

Age: -

 CD63 1.709 - - - - 0.963 0.746 Mlig455_011225 {REF} {Length: 1814} {Pfam: Tetraspanin family [PF00335.22, score=139.2]} {Human: ENSG00000135404, CD63, CD63 molecule, [Score=84.7, Expect=8e-19]} {Mouse: ENSMUSG00000025351, Cd63, CD63 antigen, [Score=79.0, Expect=7e-17]; ENSMUSG00000027215, Cd82, CD82 antigen, [Score=78.2, Expect=2e-16]} {Dmel: FBgn0035936, Tsp66E, Tetraspanin 66E, [Score=98.6, Expect=6e-24]} {Celegans: WBGene00006637, tsp-11, Tetraspanin, [RH, Score=75.5, Expect=1e-15]} {Smed: dd_Smed_v6_2698_0_1, dd_Smed_v6_2698_0_1, [RH, Score=159, Expect=3e-47]} {RNA1509_12441} {RNA1310_16211} {RNA815_7034.1}
6. MligTC455_49639 6233 129.85 Mlig455_022526, Mlig455_022566

Neo: -

Age: -

Region-enriched R7: 4.041/0.00000
Region-enriched R8: 2.616/0.00002

Regeneration-downregulated BL: -3.756

Regeneration-depleted BL: -3.756

 1.703 - - 0.753 - 0.950 -

Mlig455_022526 {REF} {Length: 493} {TRANSSPLICED} {RNA1509_5516} {RNA1310_67929} {RNA815_34597}

Mlig455_022566 {REF} {Length: 494} {TRANSSPLICED} {RNA1509_5516} {RNA1310_67929, RNA1509_5516} {RNA1509_5516, RNA815_34597}
7. MligTC455_25791 6624 137.99 Mlig455_026535, Mlig455_036977, Mlig455_037651, Mlig455_044767, Mlig455_048877, Mlig455_048885, Mlig455_049562, Mlig455_053664, Mlig455_071136

Neo: -

Age: -

 NYNRIN 1.702 - - - - 0.955 0.747

Mlig455_026535 {REF} {Length: 632} {RNA1509_22707} {RNA1310_30534} {RNA815_24119.1}

Mlig455_036977 {REF} {Length: 962} {NoTransDecoderORF} {RNA1509_22707} {RNA1310_61401.1} {RNA815_24119.1}

Mlig455_037651 {REF} {Length: 4197} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=109.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=84.7]; Integrase zinc binding domain [PF17921.3, score=60.4]; Integrase core domain [PF00665.28, score=54.2]; gag-polyprotein putative aspartyl protease [PF13975.8, score=25.5]; H2C2 zinc finger [PF09337.12, score=23.0]; Retroviral aspartyl protease [PF00077.22, score=21.5]; Aspartyl protease [PF13650.8, score=20.9]; Integrase core domain [PF13683.8, score=20.6]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=75.9, Expect=5e-13]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=84.3, Expect=7e-16]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=327, Expect=9e-95]} {RNA1509_41126} {RNA1310_3178} {RNA815_4850.1}

Mlig455_044767 {REF} {Length: 995} {RNA1509_22707} {RNA1310_30534} {RNA815_24119.1}

Mlig455_048877 {REF} {Length: 847} {NoTransDecoderORF} {RNA1509_56606} {RNA1310_61500} {RNA815_24119.2}

Mlig455_048885 {REF} {Length: 1005} {RNA1509_56606} {RNA1310_33252.1} {RNA815_24119.1}

Mlig455_049562 {REF} {Length: 1289} {NoTransDecoderORF} {RNA1509_22707} {RNA1310_61500} {RNA815_24119.1}

Mlig455_053664 {REF} {Length: 994} {RNA1509_22707} {RNA1310_30534} {RNA815_24119.1}

Mlig455_071136 {REF} {Length: 1286} {RNA1509_22707} {RNA1310_61500} {RNA815_24119.1}
8. MligTC455_46047 71 1.48 Mlig455_003968, Mlig455_012751, Mlig455_019818, Mlig455_042549

Neo: -

Age: Up-Down-Down

 1.655 - - - - 0.950 0.705

Mlig455_003968 {REF} {Length: 1636} {RNA1509_32911} {RNA1310_1680} {RNA815_2080}

Mlig455_012751 {REF} {Length: 1531} {RNA1509_15268} {RNA1310_1680} {RNA815_2080}

Mlig455_019818 {REF} {Length: 1294} {NoTransDecoderORF} {RNA1509_15268} {RNA1310_1680} {RNA815_2080}

Mlig455_042549 {REF} {Length: 1623} {RNA1509_32911} {RNA1310_1680} {RNA815_2080}
9. MligTC455_10164 25 0.53 Mlig455_047948

Neo: -

Age: -

 0.989 - - - 0.989 - - Mlig455_047948 {REF} {Length: 437} {NoTransDecoderORF} {RNA1509_42160} {RNA1310_38543} {RNA815_64948}
10. MligTC455_52250 449 9.35 Mlig455_011197

Neo: -

Age: Down-Down-Down

Region-enriched R7: 2.784/0.00110

 CD63 0.972 - - - - 0.972 - Mlig455_011197 {REF} {Length: 1812} {Pfam: Tetraspanin family [PF00335.22, score=139.2]} {Human: ENSG00000135404, CD63, CD63 molecule, [Score=84.7, Expect=8e-19]} {Mouse: ENSMUSG00000025351, Cd63, CD63 antigen, [Score=79.0, Expect=7e-17]; ENSMUSG00000027215, Cd82, CD82 antigen, [Score=78.2, Expect=2e-16]} {Dmel: FBgn0035936, Tsp66E, Tetraspanin 66E, [Score=98.6, Expect=6e-24]} {Celegans: WBGene00006637, tsp-11, Tetraspanin, [RH, Score=75.5, Expect=1e-15]} {Smed: dd_Smed_v6_2698_0_1, dd_Smed_v6_2698_0_1, [RH, Score=159, Expect=3e-47]} {RNA1509_12441} {RNA1310_16211} {RNA815_7034.1}
11. MligTC455_54054 225 4.69 Mlig455_057798

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.674

 0.967 - - - - 0.967 - Mlig455_057798 {REF} {Length: 521} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_48165} {RNA1310_29299.1} {RNA815_15457}
12. MligTC455_08764 137 2.86 Mlig455_031176

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_031176 {REF} {Length: 746} {NoTransDecoderORF}
13. MligTC455_07246 45 0.93 Mlig455_067474

Neo: -

Age: -

 SON 0.963 - - - 0.963 - - Mlig455_067474 {REF} {Length: 977} {Human: ENSG00000159140, SON, SON DNA binding protein, [Score=58.9, Expect=6e-10]} {Mouse: ENSMUSG00000022961, Son, Son DNA binding protein, [Score=59.3, Expect=3e-10]} {RNA1310_117140}
14. MligTC455_28157 285 5.93 Mlig455_027865

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_027865 {REF} {Length: 2212} {RNA1509_11222} {RNA1310_16919.1} {RNA815_22812.1}
15. MligTC455_32101 59 1.23 Mlig455_036934

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_036934 {REF} {Length: 1702} {RNA1509_32552} {RNA1310_26646.1} {RNA815_9516}
16. MligTC455_28889 148 3.07 Mlig455_007222

Neo: -

Age: Down-Down-Up

 CNFN 0.961 - - - - 0.961 - Mlig455_007222 {REF} {Length: 9971} {TRANSSPLICED} {Pfam: PLAC8 family [PF04749.19, score=49.2]} {Human: ENSG00000105427, CNFN, cornifelin, [Score=45.1, Expect=4e-06]} {Mouse: ENSMUSG00000063651, Cnfn, cornifelin, [Score=46.6, Expect=9e-07]} {Smed: dd_Smed_v6_865_0_1, dd_Smed_v6_865_0_1, [Score=94.4, Expect=4e-25]} {RNA1509_12352, RNA1509_36973} {RNA1310_2280.1, RNA1509_36973} {RNA1509_36973, RNA815_459.1}
17. MligTC455_27800 102 2.12 Mlig455_016297

Neo: -

Age: Down-Down-Up

 0.96 - - - - 0.960 - Mlig455_016297 {REF} {Length: 4934} {RNA1509_52468} {RNA1310_42461} {RNA815_10757}
18. MligTC455_23665 5561 115.86 Mlig455_051942

Neo: -

Age: -

 CD81 0.959 - - - - 0.959 - Mlig455_051942 {REF} {Length: 1863} {TRANSSPLICED} {Pfam: Tetraspanin family [PF00335.22, score=145.7]} {Human: ENSG00000110651, CD81, CD81 molecule, [RH, Score=97.4, Expect=8e-24]} {Mouse: ENSMUSG00000037706, Cd81, CD81 antigen, [RH, Score=97.4, Expect=5e-24]; ENSMUSG00000027858, Tspan2, tetraspanin 2, [RH, Score=96.7, Expect=6e-24]} {Dmel: FBgn0027865, Tsp96F, Tetraspanin 96F, [RH, Score=105, Expect=6e-27]} {Celegans: WBGene00006632, tsp-6, Tetraspanin, [Score=70.1, Expect=3e-14]} {Smed: dd_Smed_v6_4080_0_1, dd_Smed_v6_4080_0_1, [RH, Score=132, Expect=8e-38]} {RNA1509_7055} {RNA1310_13698} {RNA815_10346.1}
19. MligTC455_00462 37 0.77 Mlig455_000458

Neo: -

Age: -

Regeneration-enriched TP: 8.699
Regeneration-enriched BL: 7.460
Regeneration-enriched R3: 7.157
Regeneration-enriched R4: 6.829
Regeneration-enriched R6: 6.381
Regeneration-enriched R5: 6.068

 0.958 - - - - 0.958 - Mlig455_000458 {REF} {Length: 572} {NoTransDecoderORF}
20. MligTC455_17906 25 0.53 Mlig455_041446

Neo: -

Age: -

Region-enriched R4: 4.797/0.00142

 0.958 - - - 0.958 - - Mlig455_041446 {REF} {Length: 786} {RNA1310_47367}
21. MligTC455_34240 98 2.04 Mlig455_067901

Neo: -

Age: logFC(26M/2M)=-0.482

 0.958 - - - - 0.958 - Mlig455_067901 {REF} {Length: 2932} {RNA1310_22409} {RNA815_36119}
22. MligTC455_49870 86 1.8 Mlig455_028362, Mlig455_067454, Mlig455_067455

Neo: -

Age: -

 CHRM1, CHRM4 0.957 - - - - 0.957 -

Mlig455_028362 {REF} {Length: 3223} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=40.4]} {Human: ENSG00000168539, CHRM1, cholinergic receptor muscarinic 1, [Score=98.2, Expect=2e-21]; ENSG00000180720, CHRM4, cholinergic receptor muscarinic 4, [Score=94.7, Expect=3e-20]} {Mouse: ENSMUSG00000032773, Chrm1, cholinergic receptor, muscarinic 1, CNS, [Score=97.4, Expect=2e-21]; ENSMUSG00000040495, Chrm4, cholinergic receptor, muscarinic 4, [Score=94.7, Expect=2e-20]} {Dmel: FBgn0037546, mAChR-B, muscarinic Acetylcholine Receptor, B-type, [Score=136, Expect=5e-34]} {Celegans: WBGene00001518, gar-2, Probable muscarinic acetylcholine receptor gar-2, [RH, Score=128, Expect=4e-33]} {Smed: dd_Smed_v6_37337_0_1, dd_Smed_v6_37337_0_1, [RH, Score=149, Expect=1e-42]} {RNA1310_12338} {RNA815_37088}

Mlig455_067454 {REF} {Length: 1188} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=103.9]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=29.7]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=27.2]} {Human: ENSG00000180720, CHRM4, cholinergic receptor muscarinic 4, [Score=102, Expect=2e-23]; ENSG00000168539, CHRM1, cholinergic receptor muscarinic 1, [Score=97.1, Expect=1e-21]} {Mouse: ENSMUSG00000040495, Chrm4, cholinergic receptor, muscarinic 4, [Score=103, Expect=6e-24]} {Dmel: FBgn0037546, mAChR-B, muscarinic Acetylcholine Receptor, B-type, [Score=189, Expect=1e-53]} {Celegans: WBGene00001518, gar-2, Probable muscarinic acetylcholine receptor gar-2, [Score=133, Expect=3e-34]} {Smed: dd_Smed_v6_24759_0_1, dd_Smed_v6_24759_0_1, [Score=225, Expect=7e-69]} {RNA1310_12338} {RNA815_52171}

Mlig455_067455 {REF} {Length: 2697} {RNA1310_12338} {RNA815_37088}
23. MligTC455_31173 106 2.2 Mlig455_014341

Neo: -

Age: logFC(26M/2M)=-0.733

Region-enriched R7: 6.726/0.00000

 0.956 - - - - 0.956 - Mlig455_014341 {REF} {Length: 1841} {Pfam: Methyltransferase domain [PF13383.8, score=20.2]} {Smed: dd_Smed_v6_3811_0_1, dd_Smed_v6_3811_0_1, [Score=95.9, Expect=1e-21]} {RNA1509_59112} {RNA1310_31222} {RNA815_14954}
24. MligTC455_01692 13 0.27 Mlig455_012275

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_012275 {REF} {Length: 1467} {NoTransDecoderORF} {RNA1509_39047} {RNA1310_143193} {RNA815_57966}
25. MligTC455_14505 77 1.61 Mlig455_049200

Neo: -

Age: -

Region-enriched R2: 7.035/0.00040

 HEY2 0.954 - - - - 0.954 - Mlig455_049200 {REF} {Length: 1539} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=64.5]; Hairy Orange [PF07527.15, score=40.4]} {Human: ENSG00000135547, HEY2, hes related family bHLH transcription factor with YRPW motif 2, [Score=133, Expect=3e-36]; ENSG00000164683, HEY1, hes related family bHLH transcription factor with YRPW motif 1, [Score=132, Expect=4e-37]; ENSG00000163909, HEYL, hes related family bHLH transcription factor with YRPW motif-like, [Score=127, Expect=5e-34]} {Mouse: ENSMUSG00000019789, Hey2, hairy/enhancer-of-split related with YRPW motif 2, [Score=135, Expect=6e-37]; ENSMUSG00000040289, Hey1, hairy/enhancer-of-split related with YRPW motif 1, [Score=130, Expect=3e-35]} {Dmel: FBgn0027788, Hey, Hairy/E(spl)-related with YRPW motif, [Score=106, Expect=7e-26]} {Celegans: WBGene00003008, lin-22, Lin-22, [Score=48.1, Expect=1e-06]} {Smed: dd_Smed_v6_22479_0_1, dd_Smed_v6_22479_0_1, [Score=90.5, Expect=1e-20]} {RNA1310_79462} {RNA815_41474}
26. MligTC455_39468 4666 97.21 Mlig455_035437

Neo: -

Age: logFC(26M/2M)=0.514

 CALM2 0.954 - - - - 0.954 - Mlig455_035437 {REF} {Length: 1280} {Pfam: EF-hand domain pair [PF13499.8, score=68.6]; EF hand [PF00036.34, score=60.0]; EF-hand domain pair [PF13833.8, score=50.8]; EF-hand domain [PF13405.8, score=49.4]; EF-hand domain [PF14658.8, score=43.0]; EF hand [PF13202.8, score=39.8]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=109, Expect=1e-29]; ENSG00000160014, CALM3, calmodulin 3, [Score=107, Expect=4e-29]; ENSG00000198668, CALM1, calmodulin 1, [Score=107, Expect=4e-29]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=108, Expect=3e-29]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=107, Expect=3e-29]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=107, Expect=3e-29]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=107, Expect=3e-29]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=105, Expect=6e-29]} {Smed: dd_Smed_v6_1627_0_1, dd_Smed_v6_1627_0_1, [RH, Score=173, Expect=2e-55]} {RNA1509_15260, RNA1509_3031, RNA1509_43553} {RNA1310_28333, RNA1509_15260, RNA1509_3031, RNA1509_43553} {RNA1509_15260, RNA1509_3031, RNA1509_43553, RNA815_5038}
27. MligTC455_47007 125 2.61 Mlig455_023877

Neo: Germline

Age: -

Region-enriched R4: 3.828/0.03386

 0.952 - - - 0.952 - - Mlig455_023877 {REF} {Length: 1877} {RNA1509_31914, RNA1509_41845} {RNA1310_20086.2, RNA1509_31914, RNA1509_41845} {RNA1509_31914, RNA1509_41845, RNA815_17976.1}
28. MligTC455_14460 40 0.83 Mlig455_029779

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.445

 TRPM7 0.95 - - - - 0.950 - Mlig455_029779 {REF} {Length: 2359} {Pfam: Alpha-kinase family [PF02816.20, score=137.7]; von Willebrand factor type A domain [PF13519.8, score=32.5]} {Human: ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=69.7, Expect=1e-11]; ENSG00000119121, TRPM6, transient receptor potential cation channel subfamily M member 6, [Score=69.7, Expect=9e-12]} {Mouse: ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=69.7, Expect=6e-12]; ENSMUSG00000024727, Trpm6, transient receptor potential cation channel, subfamily M, member 6, [Score=66.6, Expect=5e-11]} {Celegans: WBGene00001160, efk-1, Eukaryotic elongation factor 2 kinase, [Score=50.1, Expect=3e-06]} {Smed: dd_Smed_v6_2226_1_1, dd_Smed_v6_2226_1_1, [Score=54.7, Expect=9e-08]} {RNA1509_4148} {RNA1310_6638.1} {RNA815_3624}
29. MligTC455_36247 276 5.75 Mlig455_047147

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_047147 {REF} {Length: 6984} {Smed: dd_Smed_v6_9728_0_2, dd_Smed_v6_9728_0_2, [RH, Score=90.5, Expect=1e-18]} {RNA1509_35531} {RNA1310_31312, RNA1509_35531} {RNA1509_35531, RNA815_29466}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA