M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_07246

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_07246 45 0.93 Mlig455_067474

Neo: -

Age: -

 SON Mlig455_067474 {REF} {Length: 977} {Human: ENSG00000159140, SON, SON DNA binding protein, [Score=58.9, Expect=6e-10]} {Mouse: ENSMUSG00000022961, Son, Son DNA binding protein, [Score=59.3, Expect=3e-10]} {RNA1310_117140}

Cumulative graph for MligTC455_07246

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.507 1.323 1.00000 1.00000
RegionR2 0.918 1.323 0.99999 1.00000
RegionR3 0.043 1.323 0.99996 1.00000
RegionR4 -1.095 1.323 0.99997 1.00000
RegionR5 -0.446 1.323 1.00000 1.00000
RegionR6 -0.045 1.323 1.00000 1.00000
RegionR7 0.458 1.323 0.99996 1.00000
RegionR8 0.673 1.323 0.99997 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.69 1.323 0.99999 1.00000
RegenerationR2 5.616 1.323 0.12035 0.53934
RegenerationR3 5.311 1.323 0.19892 0.63349
RegenerationR4 5.103 1.323 0.21296 0.66012
RegenerationR5 4.802 1.323 0.17129 0.59939
RegenerationR6 3.249 1.323 0.31752 0.66478
RegenerationBL 4.923 1.323 0.12361 0.41775
RegenerationTP 3.849 1.323 0.32416 0.76836


Genes with expression patterns similar to MligTC455_07246

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_07246 45 0.93 Mlig455_067474

Neo: -

Age: -

 SON 3 - - - 1.000 1.000 1.000 Mlig455_067474 {REF} {Length: 977} {Human: ENSG00000159140, SON, SON DNA binding protein, [Score=58.9, Expect=6e-10]} {Mouse: ENSMUSG00000022961, Son, Son DNA binding protein, [Score=59.3, Expect=3e-10]} {RNA1310_117140}
2. MligTC455_10164 25 0.53 Mlig455_047948

Neo: -

Age: -

 2.385 - - - 0.977 0.705 0.703 Mlig455_047948 {REF} {Length: 437} {NoTransDecoderORF} {RNA1509_42160} {RNA1310_38543} {RNA815_64948}
3. MligTC455_13251 89 1.86 Mlig455_005191

Neo: -

Age: logFC(26M/2M)=-0.503

 1.705 - - - - 0.742 0.963 Mlig455_005191 {REF} {Length: 651} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=36.6]} {Mouse: ENSMUSG00000066279, Chrna10, cholinergic receptor, nicotinic, alpha polypeptide 10, [Score=41.2, Expect=9e-06]} {RNA1509_40279} {RNA1310_35227} {RNA815_50075}
4. MligTC455_49189 25 0.52 Mlig455_021932

Neo: -

Age: -

 1.684 - - - - 0.957 0.727 Mlig455_021932 {REF} {Length: 742} {NoTransDecoderORF} {RNA1509_52163} {RNA1310_35227} {RNA815_50075}
5. MligTC455_39724 59 1.22 Mlig455_026218

Neo: -

Age: -

 1.664 - - - - 0.713 0.951 Mlig455_026218 {REF} {Length: 448} {NoTransDecoderORF} {RNA1509_22928} {RNA1310_87210} {RNA815_14978}
6. MligTC455_17906 25 0.53 Mlig455_041446

Neo: -

Age: -

Region-enriched R4: 4.797/0.00142

 0.997 - - - 0.997 - - Mlig455_041446 {REF} {Length: 786} {RNA1310_47367}
7. MligTC455_24402 66 1.37 Mlig455_026150

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.826

Region-enriched R7: 3.491/0.02638

 0.993 - - - 0.993 - - Mlig455_026150 {REF} {Length: 5055} {RNA1509_55157} {RNA1310_33181, RNA1509_55157} {RNA1509_55157, RNA815_16598}
8. MligTC455_53486 21 0.44 Mlig455_053034

Neo: -

Age: -

 0.984 - - - 0.984 - - Mlig455_053034 {REF} {Length: 1190} {RNA1509_45864} {RNA1310_3774} {RNA815_2602}
9. MligTC455_13304 32 0.68 Mlig455_071151

Neo: -

Age: Down-Up-Down

Region-enriched R3: 4.911/0.01970

 0.982 - - - 0.982 - - Mlig455_071151 {REF} {Length: 3765} {Pfam: TatD related DNase [PF01026.23, score=22.4]} {RNA1509_28937} {RNA1310_4063.2} {RNA815_6984}
10. MligTC455_21941 57 1.2 Mlig455_005337, Mlig455_008287, Mlig455_042435, Mlig455_042486

Neo: -

Age: Down-Up-Down

 0.98 - - - 0.980 - -

Mlig455_005337 {REF} {Length: 1085} {RNA1310_43853} {RNA815_33228}

Mlig455_008287 {REF} {Length: 716} {Pfam: Phage integrase family [PF00589.24, score=27.0]} {RNA1310_43853} {RNA815_33228}

Mlig455_042435 {REF} {Length: 1075} {Pfam: Phage integrase family [PF00589.24, score=24.5]} {RNA1310_28668} {RNA815_33228}

Mlig455_042486 {REF} {Length: 1073} {Pfam: Phage integrase family [PF00589.24, score=24.5]} {RNA1509_29315} {RNA1310_28668} {RNA815_33228}
11. MligTC455_37330 64 1.32 Mlig455_050800, Mlig455_070183

Neo: -

Age: -

 0.976 - - - - - 0.976

Mlig455_050800 {REF} {Length: 405} {NoTransDecoderORF} {RNA1509_54430} {RNA1310_59969} {RNA815_41194.1}

Mlig455_070183 {REF} {Length: 576} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_99471} {RNA815_64986}
12. MligTC455_42203 119 2.48 Mlig455_068705

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.753

Region-specific R4: 4.757

Region-enriched R4: 2.467/0.01764

 0.973 - - - 0.973 - - Mlig455_068705 {REF} {Length: 1447} {RNA1509_44705} {RNA1310_18370} {RNA815_5248}
13. MligTC455_11779 247 5.15 Mlig455_015830

Neo: Germline

Age: -

 HSBP1 0.972 - - - 0.972 - - Mlig455_015830 {REF} {Length: 5894} {Pfam: Heat shock factor binding protein 1 [PF06825.14, score=44.7]} {Human: ENSG00000230989, HSBP1, heat shock factor binding protein 1, [Score=42.7, Expect=1e-05]} {Celegans: WBGene00002002, hsb-1, Heat Shock factor Binding protein, [Score=44.3, Expect=1e-06]} {RNA1509_2515} {RNA1310_28603.1} {RNA815_20600.2}
14. MligTC455_12958 55 1.15 Mlig455_055683

Neo: -

Age: -

 0.971 - - - - - 0.971 Mlig455_055683 {REF} {Length: 1376}
15. MligTC455_06659 16 0.34 Mlig455_062335

Neo: -

Age: -

Regeneration-upregulated R2: 5.687

Regeneration-enriched R2: 5.687

 0.97 - - - - - 0.970 Mlig455_062335 {REF} {Length: 1309} {NoTransDecoderORF} {RNA1509_48872} {RNA1310_50066} {RNA815_26340}
16. MligTC455_46098 66 1.37 Mlig455_058029, Mlig455_058164, Mlig455_058220

Neo: -

Age: -

 LIN28B 0.97 - - - - - 0.970

Mlig455_058029 {REF} {Length: 2395} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=79.9]; Zinc knuckle [PF00098.25, score=35.9]} {Human: ENSG00000187772, LIN28B, lin-28 homolog B, [RH, Score=130, Expect=1e-35]; ENSG00000131914, LIN28A, lin-28 homolog A, [RH, Score=127, Expect=4e-35]} {Mouse: ENSMUSG00000050966, Lin28a, lin-28 homolog A (C. elegans), [RH, Score=127, Expect=2e-35]} {Dmel: FBgn0035626, lin-28, [RH, Score=150, Expect=7e-45]} {Celegans: WBGene00003014, lin-28, [RH, Score=115, Expect=3e-31]} {Smed: dd_Smed_v6_17304_0_1, dd_Smed_v6_17304_0_1, [RH, Score=192, Expect=1e-61]}

Mlig455_058164 {REF} {Length: 2624} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=80.2]; Zinc knuckle [PF00098.25, score=36.4]} {Human: ENSG00000187772, LIN28B, lin-28 homolog B, [RH, Score=130, Expect=3e-36]; ENSG00000131914, LIN28A, lin-28 homolog A, [RH, Score=127, Expect=1e-35]} {Mouse: ENSMUSG00000050966, Lin28a, lin-28 homolog A (C. elegans), [RH, Score=128, Expect=5e-36]} {Dmel: FBgn0035626, lin-28, [RH, Score=151, Expect=2e-45]} {Celegans: WBGene00003014, lin-28, [RH, Score=115, Expect=4e-31]} {Smed: dd_Smed_v6_17304_0_1, dd_Smed_v6_17304_0_1, [RH, Score=193, Expect=2e-62]}

Mlig455_058220 {REF} {Length: 2982} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=80.1]; Zinc knuckle [PF00098.25, score=36.3]} {Human: ENSG00000187772, LIN28B, lin-28 homolog B, [RH, Score=130, Expect=1e-36]; ENSG00000131914, LIN28A, lin-28 homolog A, [RH, Score=127, Expect=1e-35]} {Mouse: ENSMUSG00000050966, Lin28a, lin-28 homolog A (C. elegans), [RH, Score=127, Expect=8e-36]} {Dmel: FBgn0035626, lin-28, [RH, Score=150, Expect=4e-45]} {Celegans: WBGene00003014, lin-28, [RH, Score=115, Expect=5e-31]} {Smed: dd_Smed_v6_17304_0_1, dd_Smed_v6_17304_0_1, [RH, Score=192, Expect=4e-62]}
17. MligTC455_12006 34 0.71 Mlig455_019929

Neo: -

Age: -

 0.966 - - - - - 0.966 Mlig455_019929 {REF} {Length: 483} {NoTransDecoderORF} {RNA1310_116624}
18. MligTC455_07851 152 3.16 Mlig455_000950

Neo: -

Age: -

Region-enriched R4: 5.566/0.00142

 0.965 - - - - - 0.965 Mlig455_000950 {REF} {Length: 404} {NoTransDecoderORF}
19. MligTC455_27066 95 1.99 Mlig455_008802

Neo: -

Age: -

 0.965 - - - - - 0.965 Mlig455_008802 {REF} {Length: 1551} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_54802} {RNA815_64986}
20. MligTC455_40205 100 2.08 Mlig455_005749

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 5.845

 0.964 - - - 0.964 - - Mlig455_005749 {REF} {Length: 2660} {RNA1509_20476, RNA1509_58796} {RNA1310_19483, RNA1509_20476, RNA1509_58796} {RNA1509_20476, RNA1509_58796, RNA815_17630}
21. MligTC455_12042 47 0.98 Mlig455_070230

Neo: -

Age: Down-Down-Up

 SVOP 0.963 - - - 0.963 - - Mlig455_070230 {REF} {Length: 1901} {Pfam: Major Facilitator Superfamily [PF07690.18, score=107.7]; Sugar (and other) transporter [PF00083.26, score=94.4]; MFS/sugar transport protein [PF13347.8, score=21.5]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=326, Expect=5e-105]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=320, Expect=1e-102]} {Dmel: FBgn0034956, CG4324, [Score=262, Expect=2e-81]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=288, Expect=4e-91]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=391, Expect=1e-131]} {RNA1310_43061} {RNA815_35117}
22. MligTC455_38112 144 3 Mlig455_035800, Mlig455_068307

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.078

 0.963 - - - - - 0.963

Mlig455_035800 {REF} {Length: 440} {NoTransDecoderORF}

Mlig455_068307 {REF} {Length: 195} {NoTransDecoderORF}
23. MligTC455_40064 79 1.64 Mlig455_002594

Neo: Neoblast

Age: logFC(26M/2M)=-0.725

Region-enriched R4: 2.735/0.03778

 ZFP36L2 0.963 - - - 0.963 - - Mlig455_002594 {REF} {Length: 1570} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=45.2]; Zinc finger domain [PF18345.3, score=34.4]; RNA-binding, Nab2-type zinc finger [PF14608.8, score=19.8]; CCCH-type zinc finger [PF18044.3, score=18.5]} {Human: ENSG00000152518, ZFP36L2, ZFP36 ring finger protein like 2, [RH, Score=76.6, Expect=4e-17]} {Mouse: ENSMUSG00000045817, Zfp36l2, zinc finger protein 36, C3H type-like 2, [Score=77.0, Expect=2e-17]; ENSMUSG00000021127, Zfp36l1, zinc finger protein 36, C3H type-like 1, [Score=77.0, Expect=1e-17]; ENSMUSG00000059334, Zfp36l3, zinc finger protein 36, C3H type-like 3, [Score=75.5, Expect=9e-17]} {Dmel: FBgn0011837, Tis11, Tis11 zinc finger protein, [Score=73.6, Expect=2e-16]} {Celegans: WBGene00009532, ccch-1, CCCH-type zinc finger putative transcription factor, [Score=70.1, Expect=3e-15]} {RNA1310_36065} {RNA815_47496}
24. MligTC455_33610 363 7.57 Mlig455_017447

Neo: Germline

Age: Up-Down-Up, logFC(26M/2M)=2.665

Region-enriched R4: 3.381/0.00901

 ASAH2 0.962 - - - 0.962 - - Mlig455_017447 {REF} {Length: 2857} {Pfam: Neutral/alkaline non-lysosomal ceramidase, N-terminal [PF04734.15, score=705.2]; Neutral/alkaline non-lysosomal ceramidase, C-terminal [PF17048.7, score=155.5]} {Human: ENSG00000188611, ASAH2, N-acylsphingosine amidohydrolase 2, [RH, Score=628, Expect=0.0]} {Mouse: ENSMUSG00000024887, Asah2, N-acylsphingosine amidohydrolase 2, [RH, Score=613, Expect=0.0]} {Dmel: FBgn0039774, CDase, Ceramidase, [RH, Score=594, Expect=0.0]} {Smed: dd_Smed_v6_1726_0_1, dd_Smed_v6_1726_0_1, [RH, Score=664, Expect=0.0]} {RNA1509_17200} {RNA1310_8395.1} {RNA815_2759}
25. MligTC455_07328 26 0.55 Mlig455_058300

Neo: -

Age: -

 0.96 - - - 0.960 - - Mlig455_058300 {REF} {Length: 429} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_89251}
26. MligTC455_16071 229 4.77 Mlig455_047509

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 5.448

Region-enriched R4: 3.022/0.00929

 0.958 - - - 0.958 - - Mlig455_047509 {REF} {Length: 3810} {RNA1509_37500} {RNA1310_107557} {RNA815_11877}
27. MligTC455_27062 74 1.53 Mlig455_018532

Neo: -

Age: -

Region-enriched R4: 4.522/0.04497

 0.956 - - - - - 0.956 Mlig455_018532 {REF} {Length: 488} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_99471} {RNA815_64986}
28. MligTC455_27859 118 2.45 Mlig455_066646

Neo: -

Age: Up-Down-Up

 NUDCD1 0.956 - - - - - 0.956 Mlig455_066646 {REF} {Length: 4075} {TRANSSPLICED} {Pfam: CS domain [PF04969.18, score=25.8]} {Human: ENSG00000120526, NUDCD1, NudC domain containing 1, [Score=166, Expect=1e-44]} {Mouse: ENSMUSG00000038736, Nudcd1, NudC domain containing 1, [Score=157, Expect=8e-42]} {Dmel: FBgn0030342, CG10347, [Score=61.6, Expect=7e-10]} {RNA1509_9333} {RNA1310_9303.1} {RNA815_4347}
29. MligTC455_28754 101 2.11 Mlig455_007328

Neo: -

Age: -

 0.956 - - - - - 0.956 Mlig455_007328 {REF} {Length: 4271} {Pfam: Protein of unknown function (DUF1104) [PF06518.13, score=22.6]} {RNA1509_29114} {RNA1310_11511, RNA1509_29114} {RNA1509_29114, RNA815_1857}
30. MligTC455_05581 42 0.87 Mlig455_005887

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_005887 {REF} {Length: 906} {NoTransDecoderORF}
31. MligTC455_24975 33 0.7 Mlig455_001679

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_001679 {REF} {Length: 1106} {NoTransDecoderORF} {RNA1310_79875}
32. MligTC455_57742 31 0.66 Mlig455_062810

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_062810 {REF} {Length: 356} {NoTransDecoderORF}
33. MligTC455_40594 171 3.55 Mlig455_006568

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_006568 {REF} {Length: 1824} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_13277} {RNA1310_51098} {RNA815_47536}
34. MligTC455_55344 1399 29.15 Mlig455_011394

Neo: -

Age: -

 0.954 - - - 0.954 - - Mlig455_011394 {REF} {Length: 12} {NoTransDecoderORF}
35. MligTC455_11886 197 4.1 Mlig455_060688

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.387

 0.953 - - - - 0.953 - Mlig455_060688 {REF} {Length: 2150} {TRANSSPLICED} {Pfam: SAM domain (Sterile alpha motif) [PF07647.19, score=44.3]; SAM domain (Sterile alpha motif) [PF00536.32, score=36.5]} {Dmel: FBgn0050476, ave, aveugle, [RH, Score=45.4, Expect=1e-06]} {RNA1509_24373, RNA1509_52265} {RNA1310_35457.1, RNA1509_24373, RNA1509_52265} {RNA1509_24373, RNA1509_52265, RNA815_21293}
36. MligTC455_31620 727 15.14 Mlig455_010746, Mlig455_026255, Mlig455_030076, Mlig455_034157, Mlig455_045792, Mlig455_053595, Mlig455_070973

Neo: -

Age: -

Regeneration-upregulated BL: 4.584

Regeneration-enriched BL: 4.584

 0.951 - - - - - 0.951

Mlig455_010746 {REF} {Length: 603} {Celegans: WBGene00019192, H12I13.3, [Score=83.2, Expect=1e-19]} {Smed: dd_Smed_v6_9974_1_7, dd_Smed_v6_9974_1_7, [Score=44.7, Expect=3e-06]} {RNA1509_39854} {RNA1310_3396.1} {RNA815_1342.1}

Mlig455_026255 {REF} {Length: 447} {Celegans: WBGene00016348, C33E10.6, [Score=132, Expect=5e-34]} {Smed: dd_Smed_v6_9974_1_7, dd_Smed_v6_9974_1_7, [Score=113, Expect=6e-28]} {RNA1509_39854} {RNA1310_17473} {RNA815_1342.1}

Mlig455_030076 {REF} {Length: 447} {Celegans: WBGene00016348, C33E10.6, [Score=132, Expect=5e-34]} {Smed: dd_Smed_v6_9974_1_7, dd_Smed_v6_9974_1_7, [Score=113, Expect=6e-28]} {RNA1509_39854} {RNA1310_17473} {RNA815_1342.1}

Mlig455_034157 {REF} {Length: 1056} {Celegans: WBGene00016348, C33E10.6, [Score=132, Expect=5e-34]} {Smed: dd_Smed_v6_9974_1_7, dd_Smed_v6_9974_1_7, [Score=113, Expect=6e-28]} {RNA1509_8946} {RNA1310_3396.1} {RNA815_1342.1}

Mlig455_045792 {REF} {Length: 686} {Celegans: WBGene00019192, H12I13.3, [Score=159, Expect=8e-46]} {Smed: dd_Smed_v6_9974_1_9, dd_Smed_v6_9974_1_9, [Score=112, Expect=7e-29]} {RNA1509_50023} {RNA1310_3396.1} {RNA815_1342.1}

Mlig455_053595 {REF} {Length: 455} {Celegans: WBGene00019192, H12I13.3, [Score=159, Expect=8e-46]} {Smed: dd_Smed_v6_9974_1_9, dd_Smed_v6_9974_1_9, [Score=112, Expect=7e-29]} {RNA1509_50023} {RNA1310_3396.2} {RNA815_1342.1}

Mlig455_070973 {REF} {Length: 325} {Celegans: WBGene00016348, C33E10.6, [Score=132, Expect=5e-34]} {Smed: dd_Smed_v6_9974_1_7, dd_Smed_v6_9974_1_7, [Score=113, Expect=6e-28]} {RNA1509_39854} {RNA1310_17473} {RNA815_1342.1}
37. MligTC455_11889 66 1.37 Mlig455_040154

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_040154 {REF} {Length: 1508} {RNA1509_18432} {RNA1310_134295} {RNA815_29071}
38. MligTC455_28572 795 16.56 Mlig455_003711, Mlig455_003877

Neo: -

Age: logFC(26M/2M)=0.820

Region-enriched R3: 3.765/0.00000

 0.95 - - - 0.950 - -

Mlig455_003711 {REF} {Length: 988} {RNA1509_11217} {RNA1310_24401} {RNA815_10016}

Mlig455_003877 {REF} {Length: 2523} {RNA1509_11217} {RNA1310_24401} {RNA815_10016}
39. MligTC455_47007 125 2.61 Mlig455_023877

Neo: Germline

Age: -

Region-enriched R4: 3.828/0.03386

 0.95 - - - 0.950 - - Mlig455_023877 {REF} {Length: 1877} {RNA1509_31914, RNA1509_41845} {RNA1310_20086.2, RNA1509_31914, RNA1509_41845} {RNA1509_31914, RNA1509_41845, RNA815_17976.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA