M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_12400

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_12400 13 0.26 Mlig455_049775

Neo: -

Age: -

 Mlig455_049775 {REF} {Length: 1129}

Cumulative graph for MligTC455_12400

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_12400

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_12400 13 0.26 Mlig455_049775

Neo: -

Age: -

 2 - - - - 1.000 1.000 Mlig455_049775 {REF} {Length: 1129}
2. MligTC455_13120 12 0.24 Mlig455_052885

Neo: -

Age: -

 1.896 - - - - 0.976 0.920 Mlig455_052885 {REF} {Length: 995}
3. MligTC455_19243 94 1.96 Mlig455_048214

Neo: -

Age: -

Region-enriched R3: 3.438/0.03435
Region-enriched R5: 2.987/0.00981

 1.686 - - - - 0.952 0.734 Mlig455_048214 {REF} {Length: 2496} {RNA1509_28510} {RNA1310_39619, RNA1509_28510} {RNA1509_28510, RNA815_161}
4. MligTC455_51737 49 1.01 Mlig455_060275

Neo: Germline

Age: logFC(26M/2M)=-0.968

Region-enriched R4: 3.321/0.01433

 HFM1 0.999 - - - - 0.999 - Mlig455_060275 {REF} {Length: 5261} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=79.5]; Sec63 Brl domain [PF02889.18, score=67.8]; Helicase conserved C-terminal domain [PF00271.33, score=34.2]; Type III restriction enzyme, res subunit [PF04851.17, score=33.2]; Helix-hairpin-helix domain [PF14520.8, score=22.6]} {Human: ENSG00000162669, HFM1, HFM1, ATP dependent DNA helicase homolog, [RH, Score=571, Expect=3e-177]} {Mouse: ENSMUSG00000043410, Hfm1, HFM1, ATP-dependent DNA helicase homolog, [RH, Score=568, Expect=1e-176]} {Dmel: FBgn0263599, l(3)72Ab, lethal (3) 72Ab, [Score=280, Expect=5e-76]} {Celegans: WBGene00012896, snrp-200, Putative U5 small nuclear ribonucleoprotein 200 kDa helicase, [Score=265, Expect=2e-71]} {Smed: dd_Smed_v6_24408_0_1, dd_Smed_v6_24408_0_1, [RH, Score=448, Expect=5e-135]} {RNA1509_54934} {RNA1310_43917, RNA1509_54934} {RNA1509_54934, RNA815_48120}
5. MligTC455_10375 17 0.35 Mlig455_066826

Neo: -

Age: -

 0.996 - - - - 0.996 - Mlig455_066826 {REF} {Length: 668} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59624} {RNA1310_65491} {RNA815_10554.1}
6. MligTC455_20891 5 0.11 Mlig455_027273

Neo: -

Age: -

 WASHC4 0.996 - - - - 0.996 - Mlig455_027273 {REF} {Length: 3986} {TRANSSPLICED} {Pfam: WASH complex subunit 7, N-terminal [PF14745.8, score=495.6]; WASH complex subunit 7 [PF14744.8, score=491.9]; WASH complex subunit 7, C-terminal [PF14746.8, score=219.7]} {Human: ENSG00000136051, WASHC4, WASH complex subunit 4, [RH, Score=1100, Expect=0.0]} {Mouse: ENSMUSG00000034560, Washc4, WASH complex subunit 4, [RH, Score=1074, Expect=0.0]} {Dmel: FBgn0030739, SWIP, Strumpellin and WASH-interacting protein, [RH, Score=395, Expect=7e-119]} {Celegans: WBGene00013167, Y53F4B.21, [RH, Score=183, Expect=1e-46]} {Smed: dd_Smed_v6_4183_0_1, dd_Smed_v6_4183_0_1, [RH, Score=769, Expect=0.0]} {RNA1509_4414} {RNA1310_2621, RNA1509_4414} {RNA1509_4414, RNA815_772}
7. MligTC455_09500 21 0.45 Mlig455_026734

Neo: -

Age: -

 0.989 - - - - 0.989 - Mlig455_026734 {REF} {Length: 2668} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=142.4]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=57.4, Expect=3e-08]} {Smed: dd_Smed_v6_18385_0_1, dd_Smed_v6_18385_0_1, [Score=246, Expect=6e-73]} {RNA1509_19376} {RNA1310_47426} {RNA815_43225}
8. MligTC455_38406 4 0.09 Mlig455_063475

Neo: -

Age: -

 ANKRD50 0.988 - - - - 0.988 - Mlig455_063475 {REF} {Length: 4390} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=47.3]; Ankyrin repeats (many copies) [PF13637.8, score=41.0]; Ankyrin repeat [PF13606.8, score=39.8]; Ankyrin repeat [PF00023.32, score=30.6]; Ankyrin repeats (many copies) [PF13857.8, score=28.6]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=60.1, Expect=2e-08]; ENSG00000107104, KANK1, KN motif and ankyrin repeat domains 1, [Score=58.2, Expect=4e-08]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=59.3, Expect=2e-08]; ENSMUSG00000032702, Kank1, KN motif and ankyrin repeat domains 1, [Score=59.3, Expect=3e-08]; ENSMUSG00000052331, Ankrd44, ankyrin repeat domain 44, [Score=57.0, Expect=1e-07]} {Dmel: FBgn0031473, CG3104, [Score=50.8, Expect=4e-06]} {Smed: dd_Smed_v6_11252_0_1, dd_Smed_v6_11252_0_1, [Score=53.1, Expect=6e-07]} {RNA1509_58343} {RNA1310_18384} {RNA815_44377}
9. MligTC455_09624 5 0.1 Mlig455_019644

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_019644 {REF} {Length: 779} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_18639} {RNA1310_42584} {RNA815_16712}
10. MligTC455_14908 12 0.25 Mlig455_036162

Neo: -

Age: Down-Up-Down

 0.983 - - - - 0.983 - Mlig455_036162 {REF} {Length: 959} {TRANSSPLICED} {Pfam: Sulfotransferase domain [PF17784.3, score=202.4]; Sulfotransferase family [PF13469.8, score=22.4]} {Smed: dd_Smed_v6_1356_0_1, dd_Smed_v6_1356_0_1, [RH, Score=181, Expect=3e-56]} {RNA1509_33205} {RNA1310_40261.1} {RNA815_9285.1}
11. MligTC455_12038 6 0.12 Mlig455_036560, Mlig455_057786

Neo: -

Age: -

 0.98 - - - - 0.980 -

Mlig455_036560 {REF} {Length: 1679}

Mlig455_057786 {REF} {Length: 1814}
12. MligTC455_46589 83 1.72 Mlig455_042396

Neo: -

Age: -

 ANKRD50 0.98 - - - - 0.980 - Mlig455_042396 {REF} {Length: 4787} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=182.5]; Ankyrin repeats (many copies) [PF13637.8, score=113.6]; Ankyrin repeats (many copies) [PF13857.8, score=103.5]; Ankyrin repeat [PF13606.8, score=101.0]; Ankyrin repeat [PF00023.32, score=87.5]; Mab-21 protein [PF03281.16, score=30.5]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=165, Expect=7e-41]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=164, Expect=8e-41]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=156, Expect=3e-38]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=145, Expect=6e-35]} {Smed: dd_Smed_v6_2072_0_12, dd_Smed_v6_2072_0_12, [Score=148, Expect=5e-36]} {RNA1509_42401} {RNA1310_4658.1} {RNA815_6429.1}
13. MligTC455_11683 4 0.09 Mlig455_032272

Neo: Germline

Age: -

 0.979 - - - - 0.979 - Mlig455_032272 {REF} {Length: 1708} {Pfam: Zinc knuckle [PF00098.25, score=20.1]} {RNA1310_66460} {RNA815_51995}
14. MligTC455_42169 10 0.21 Mlig455_011127

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_011127 {REF} {Length: 413} {NoTransDecoderORF}
15. MligTC455_37966 132 2.75 Mlig455_068209

Neo: Int S/G2/M

Age: -

Region-enriched R5: 3.816/0.00001

Regeneration-upregulated R3: 5.497

Regeneration-enriched R3: 5.497

 SPO11 0.976 - - - - 0.976 - Mlig455_068209 {REF} {Length: 2220} {TRANSSPLICED} {Pfam: Type IIB DNA topoisomerase [PF04406.16, score=52.9]} {Human: ENSG00000054796, SPO11, SPO11, initiator of meiotic double stranded breaks, [RH, Score=147, Expect=2e-40]} {Mouse: ENSMUSG00000005883, Spo11, SPO11 meiotic protein covalently bound to DSB, [RH, Score=152, Expect=2e-42]} {Dmel: FBgn0002716, mei-W68, meiotic W68, [RH, Score=100, Expect=5e-24]} {Celegans: WBGene00004985, spo-11, Meiotic recombination protein spo-11, [RH, Score=121, Expect=7e-31]} {Smed: dd_Smed_v6_43889_0_1, dd_Smed_v6_43889_0_1, [RH, Score=94.7, Expect=4e-23]} {RNA1509_18827} {RNA1310_30958} {RNA815_2962.1}
16. MligTC455_41576 62 1.29 Mlig455_041268, Mlig455_056183

Neo: -

Age: Down-Up-Up

 CPA2 0.974 - - - - - 0.974

Mlig455_041268 {REF} {Length: 3226} {Pfam: Zinc carboxypeptidase [PF00246.26, score=244.4]; Carboxypeptidase activation peptide [PF02244.18, score=24.8]} {Human: ENSG00000158516, CPA2, carboxypeptidase A2, [Score=182, Expect=9e-52]; ENSG00000165078, CPA6, carboxypeptidase A6, [Score=178, Expect=3e-50]; ENSG00000144410, CPO, carboxypeptidase O, [Score=177, Expect=2e-50]; ENSG00000128510, CPA4, carboxypeptidase A4, [Score=174, Expect=4e-49]} {Mouse: ENSMUSG00000071553, Cpa2, carboxypeptidase A2, pancreatic, [Score=187, Expect=4e-54]; ENSMUSG00000042501, Cpa6, carboxypeptidase A6, [Score=186, Expect=2e-53]; ENSMUSG00000054446, Cpa1, carboxypeptidase A1, pancreatic, [Score=179, Expect=7e-51]} {Dmel: FBgn0029804, CG3097, [RH, Score=215, Expect=3e-64]} {Celegans: WBGene00020281, T06A4.1, [RH, Score=225, Expect=1e-66]} {Smed: dd_Smed_v6_5999_0_1, dd_Smed_v6_5999_0_1, [RH, Score=247, Expect=3e-77]} {RNA1509_12605} {RNA1310_10687.1} {RNA815_3959.1}

Mlig455_056183 {REF} {Length: 2098} {Pfam: Zinc carboxypeptidase [PF00246.26, score=244.5]; Carboxypeptidase activation peptide [PF02244.18, score=24.0]} {Human: ENSG00000158516, CPA2, carboxypeptidase A2, [Score=182, Expect=6e-52]; ENSG00000144410, CPO, carboxypeptidase O, [Score=179, Expect=3e-51]; ENSG00000165078, CPA6, carboxypeptidase A6, [Score=178, Expect=3e-50]; ENSG00000128510, CPA4, carboxypeptidase A4, [Score=175, Expect=4e-49]} {Mouse: ENSMUSG00000071553, Cpa2, carboxypeptidase A2, pancreatic, [Score=188, Expect=2e-54]; ENSMUSG00000042501, Cpa6, carboxypeptidase A6, [Score=187, Expect=1e-53]} {Dmel: FBgn0029804, CG3097, [RH, Score=216, Expect=1e-64]} {Celegans: WBGene00020281, T06A4.1, [RH, Score=222, Expect=6e-66]} {Smed: dd_Smed_v6_5999_0_1, dd_Smed_v6_5999_0_1, [RH, Score=248, Expect=3e-77]} {RNA1509_12605} {RNA1310_10687.1} {RNA815_3959.1}
17. MligTC455_24931 5 0.1 Mlig455_041049

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-1.382

 0.973 - - - - 0.973 - Mlig455_041049 {REF} {Length: 2557} {NoTransDecoderORF} {RNA1509_32517} {RNA1310_34830.1} {RNA815_18494}
18. MligTC455_43026 40 0.83 Mlig455_043737

Neo: Int S/G2/M

Age: Up-Down-Down, logFC(26M/2M)=-0.373

 0.969 - - - - 0.969 - Mlig455_043737 {REF} {Length: 3032} {TRANSSPLICED} {RNA1509_38177} {RNA1310_2879.2} {RNA815_7299}
19. MligTC455_01406 9 0.19 Mlig455_057537

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_057537 {REF} {Length: 1079} {NoTransDecoderORF} {RNA1509_48098} {RNA1310_73932} {RNA815_6533.1}
20. MligTC455_20773 2 0.05 Mlig455_012155

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_012155 {REF} {Length: 1509} {TRANSSPLICED} {Pfam: Nuf2 family [PF03800.16, score=19.8]} {RNA1509_42670} {RNA1310_22763.1} {RNA815_14177}
21. MligTC455_15519 101 2.1 Mlig455_034476, Mlig455_066229

Neo: -

Age: -

 0.965 - - - - 0.965 -

Mlig455_034476 {REF} {Length: 999} {NoTransDecoderORF} {RNA1310_84226}

Mlig455_066229 {REF} {Length: 1166} {NoTransDecoderORF} {RNA1310_84218} {RNA815_34411}
22. MligTC455_18343 24 0.51 Mlig455_009752, Mlig455_070106

Neo: -

Age: -

Region-enriched R4: 7.167/0.04292

 0.961 - - - - 0.961 -

Mlig455_009752 {REF} {Length: 389} {NoTransDecoderORF} {RNA1509_25325} {RNA1310_117642} {RNA815_17620.2}

Mlig455_070106 {REF} {Length: 478} {NoTransDecoderORF} {RNA1509_53541} {RNA1310_117642} {RNA815_17620.2}
23. MligTC455_48121 51 1.06 Mlig455_005066

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_005066 {REF} {Length: 1542} {RNA1310_25017} {RNA815_18005}
24. MligTC455_41224 14 0.28 Mlig455_045227

Neo: Int S/G2/M

Age: -

 0.95 - - - - 0.950 - Mlig455_045227 {REF} {Length: 697} {RNA1310_99359}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA