M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_12625

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_12625 23 0.47 Mlig455_043716

Neo: -

Age: -

 Mlig455_043716 {REF} {Length: 1192} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=19.4]} {RNA1310_40526.1} {RNA815_22977}

Cumulative graph for MligTC455_12625

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.082 0.908 0.99978 1.00000
RegionR2 0.851 0.908 0.55174 0.91720
RegionR3 0.703 0.908 0.35093 0.88637
RegionR4 2.195 0.908 0.30266 0.61582
RegionR5 -0.186 0.908 0.74171 1.00000
RegionR6 1.852 0.908 0.23671 0.81977
RegionR7 -2.629 0.908 0.99989 1.00000
RegionR8 -2.704 0.908 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.768 0.908 0.99986 1.00000
RegenerationR2 2.078 0.908 0.11083 0.52044
RegenerationR3 1.673 0.908 0.13304 0.55667
RegenerationR4 2.44 0.908 0.04727 0.35071
RegenerationR5 3.591 0.908 0.00169 0.07130
RegenerationR6 -0.312 0.908 0.82961 0.99038
RegenerationBL 2.855 0.908 0.99980 1.00000
RegenerationTP 1.58 0.908 0.99984 1.00000


Genes with expression patterns similar to MligTC455_12625

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_12625 23 0.47 Mlig455_043716

Neo: -

Age: -

 2 1.000 - - - - 1.000 Mlig455_043716 {REF} {Length: 1192} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=19.4]} {RNA1310_40526.1} {RNA815_22977}
2. MligTC455_12626 23 0.47 Mlig455_043802

Neo: -

Age: -

 2 1.000 - - - - 1.000 Mlig455_043802 {REF} {Length: 1192} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=19.4]} {RNA1310_40526.1} {RNA815_22977}
3. MligTC455_43536 47 0.98 Mlig455_066037

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.699

Region-enriched R4: 4.380/0.03075

 PAPSS2 0.964 - - - - - 0.964 Mlig455_066037 {REF} {Length: 2522} {TRANSSPLICED} {Pfam: ATP-sulfurylase [PF01747.19, score=146.0]; PUA-like domain [PF14306.8, score=85.1]} {Human: ENSG00000198682, PAPSS2, 3'-phosphoadenosine 5'-phosphosulfate synthase 2, [Score=317, Expect=2e-104]; ENSG00000138801, PAPSS1, 3'-phosphoadenosine 5'-phosphosulfate synthase 1, [Score=314, Expect=5e-103]} {Mouse: ENSMUSG00000024899, Papss2, 3'-phosphoadenosine 5'-phosphosulfate synthase 2, [Score=316, Expect=6e-104]; ENSMUSG00000028032, Papss1, 3'-phosphoadenosine 5'-phosphosulfate synthase 1, [Score=313, Expect=2e-103]} {Dmel: FBgn0020389, Papss, PAPS synthetase, [Score=305, Expect=6e-100]} {Celegans: WBGene00004091, pps-1, 3'-Phosphoadenosine 5'-Phosphosulfate Synthetase, [Score=290, Expect=8e-94]} {Smed: dd_Smed_v6_2536_0_1, dd_Smed_v6_2536_0_1, [Score=308, Expect=2e-101]} {RNA1509_2391} {RNA1310_5399} {RNA815_4222.1}
4. MligTC455_11055 13 0.27 Mlig455_021220

Neo: -

Age: -

 ZFP36L1 0.962 - - - - - 0.962 Mlig455_021220 {REF} {Length: 2097} {TRANSSPLICED} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=58.8]; Zinc finger domain [PF18345.3, score=35.7]; RNA-binding, Nab2-type zinc finger [PF14608.8, score=29.0]; CCCH-type zinc finger [PF18044.3, score=28.1]} {Human: ENSG00000185650, ZFP36L1, ZFP36 ring finger protein like 1, [Score=67.8, Expect=2e-14]; ENSG00000152518, ZFP36L2, ZFP36 ring finger protein like 2, [Score=66.2, Expect=9e-14]} {Mouse: ENSMUSG00000059334, Zfp36l3, zinc finger protein 36, C3H type-like 3, [Score=69.7, Expect=4e-15]; ENSMUSG00000021127, Zfp36l1, zinc finger protein 36, C3H type-like 1, [Score=68.6, Expect=7e-15]} {Dmel: FBgn0011837, Tis11, Tis11 zinc finger protein, [Score=69.3, Expect=4e-15]} {Celegans: WBGene00007961, C35D6.4, [RH, Score=66.6, Expect=6e-15]} {RNA1310_91211} {RNA815_52611}
5. MligTC455_29934 27 0.57 Mlig455_014228

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_014228 {REF} {Length: 1194} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}
6. MligTC455_07667 13 0.27 Mlig455_053842, Mlig455_068499

Neo: Int S/G2/M

Age: -

 0.961 - - - - - 0.961

Mlig455_053842 {REF} {Length: 652} {RNA1310_108641}

Mlig455_068499 {REF} {Length: 652} {RNA1310_108641}
7. MligTC455_13714 219 4.55 Mlig455_039476

Neo: -

Age: -

Region-enriched R4: 5.355/0.00070
Region-enriched R5: 3.269/0.00973

 0.956 - - - - - 0.956 Mlig455_039476 {REF} {Length: 684} {NoTransDecoderORF} {RNA1509_296, RNA1509_36260, RNA1509_3658} {RNA1310_1675.1, RNA1509_296, RNA1509_3658} {RNA1509_296, RNA1509_3658, RNA815_2514.1}
8. MligTC455_33833 914 19.04 Mlig455_036754

Neo: -

Age: logFC(26M/2M)=1.451

 CYP2C8 0.952 - - - - - 0.952 Mlig455_036754 {REF} {Length: 2916} {Pfam: Cytochrome P450 [PF00067.24, score=116.8]} {Human: ENSG00000138115, CYP2C8, cytochrome P450 family 2 subfamily C member 8, [Score=91.7, Expect=2e-22]; ENSG00000186104, CYP2R1, cytochrome P450 family 2 subfamily R member 1, [Score=90.9, Expect=8e-22]; ENSG00000108242, CYP2C18, cytochrome P450 family 2 subfamily C member 18, [Score=90.1, Expect=1e-21]; ENSG00000134716, CYP2J2, cytochrome P450 family 2 subfamily J member 2, [Score=89.7, Expect=2e-21]; ENSG00000138109, CYP2C9, cytochrome P450 family 2 subfamily C member 9, [Score=89.4, Expect=3e-21]; ENSG00000165841, CYP2C19, cytochrome P450 family 2 subfamily C member 19, [Score=87.8, Expect=1e-20]} {Mouse: ENSMUSG00000030670, Cyp2r1, cytochrome P450, family 2, subfamily r, polypeptide 1, [Score=95.1, Expect=3e-24]; ENSMUSG00000025197, Cyp2c23, cytochrome P450, family 2, subfamily c, polypeptide 23, [Score=91.7, Expect=2e-22]; ENSMUSG00000032808, Cyp2c38, cytochrome P450, family 2, subfamily c, polypeptide 38, [Score=90.5, Expect=8e-22]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=85.5, Expect=4e-20]} {Celegans: WBGene00007913, cyp-36A1, Probable cytochrome P450 CYP36A1, [Score=94.0, Expect=2e-23]} {Smed: dd_Smed_v6_5344_0_3, dd_Smed_v6_5344_0_3, [Score=99.8, Expect=1e-25]} {RNA1509_56692} {RNA1310_38584.2} {RNA815_17149}
9. MligTC455_02395 15 0.31 Mlig455_021031, Mlig455_021068

Neo: -

Age: -

 0.95 - - - - - 0.950

Mlig455_021031 {REF} {Length: 746} {RNA1310_51183} {RNA815_27275}

Mlig455_021068 {REF} {Length: 1094} {RNA1310_51183} {RNA815_27275}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA