M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_12826

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_12826 117 2.43 Mlig455_045706

Neo: -

Age: -

 Mlig455_045706 {REF} {Length: 505} {NoTransDecoderORF} {RNA1310_58115.1} {RNA815_51930}

Cumulative graph for MligTC455_12826

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.648 2.186 0.99977 1.00000
RegionR2 1.865 2.186 0.13327 0.45315
RegionR3 0.367 2.186 0.64178 1.00000
RegionR4 1.301 2.186 0.28094 0.58870
RegionR5 0.158 2.186 0.70625 1.00000
RegionR6 0.814 2.186 0.45645 1.00000
RegionR7 2.11 2.186 0.11934 0.65261
RegionR8 -3.967 2.186 0.99954 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.093 2.186 0.99994 1.00000
RegenerationR2 0.218 2.186 0.71135 0.96049
RegenerationR3 0.566 2.186 0.49735 0.85683
RegenerationR4 0.435 2.186 0.60377 0.91481
RegenerationR5 0.509 2.186 0.49244 0.85461
RegenerationR6 0.65 2.186 0.40475 0.74089
RegenerationBL 1.157 2.186 0.46686 0.83339
RegenerationTP 2.463 2.186 0.21515 0.65799


Genes with expression patterns similar to MligTC455_12826

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_12826 117 2.43 Mlig455_045706

Neo: -

Age: -

 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_045706 {REF} {Length: 505} {NoTransDecoderORF} {RNA1310_58115.1} {RNA815_51930}
2. MligTC455_39500 113 2.35 Mlig455_032931, Mlig455_032946

Neo: -

Age: -

Region-enriched R2: 4.858/0.03664

 1.782 0.958 - - - - 0.824

Mlig455_032931 {REF} {Length: 1361} {Smed: dd_Smed_v6_10177_0_1, dd_Smed_v6_10177_0_1, [Score=60.5, Expect=4e-12]} {RNA1509_58254} {RNA1310_28096.1} {RNA815_22625}

Mlig455_032946 {REF} {Length: 1307} {Pfam: Domain of unknown function (DUF1330) [PF07045.13, score=19.0]} {Smed: dd_Smed_v6_10177_0_1, dd_Smed_v6_10177_0_1, [RH, Score=161, Expect=7e-50]} {RNA1509_58254} {RNA1310_28096.1, RNA1509_58254} {RNA1509_58254, RNA815_22625}
3. MligTC455_09047 37 0.77 Mlig455_056876

Neo: -

Age: -

 1.741 - - - 0.957 - 0.784 Mlig455_056876 {REF} {Length: 2003} {RNA1509_48015, RNA1509_55117} {RNA1310_10722, RNA1509_48015} {RNA1509_48015, RNA815_42109}
4. MligTC455_53382 110 2.28 Mlig455_006777

Neo: -

Age: -

 1.674 0.956 - - 0.718 - - Mlig455_006777 {REF} {Length: 2841} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=54.8]} {Dmel: FBgn0039747, AdoR, Adenosine receptor, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_8885_0_1, dd_Smed_v6_8885_0_1, [Score=137, Expect=6e-36]} {RNA1509_47534} {RNA1310_15311} {RNA815_12841}
5. MligTC455_42455 161 3.35 Mlig455_005868, Mlig455_018891

Neo: -

Age: Up-Down-Up

 NYNRIN 0.976 - - - - - 0.976

Mlig455_005868 {REF} {Length: 4106} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=94.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=70.0]; Integrase zinc binding domain [PF17921.3, score=52.8]; Integrase core domain [PF00665.28, score=45.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=34.5]; Aspartyl protease [PF13650.8, score=21.5]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=72.0, Expect=8e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=68.9, Expect=4e-11]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=68.6, Expect=5e-11]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=68.6, Expect=5e-11]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=262, Expect=1e-72]} {RNA1509_29592} {RNA1310_10223} {RNA815_18935}

Mlig455_018891 {REF} {Length: 793} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=94.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=70.0]; Integrase zinc binding domain [PF17921.3, score=52.8]; Integrase core domain [PF00665.28, score=45.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=34.5]; Aspartyl protease [PF13650.8, score=21.5]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=72.0, Expect=8e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=68.9, Expect=4e-11]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=68.6, Expect=5e-11]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=68.6, Expect=5e-11]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=262, Expect=1e-72]} {RNA1509_29592} {RNA1310_10223} {RNA815_25405.1}
6. MligTC455_33922 235 4.89 Mlig455_032137

Neo: -

Age: logFC(26M/2M)=-0.421

 SLC7A8 0.97 0.970 - - - - - Mlig455_032137 {REF} {Length: 3423} {Pfam: Amino acid permease [PF13520.8, score=218.6]; Amino acid permease [PF00324.23, score=127.0]} {Human: ENSG00000092068, SLC7A8, solute carrier family 7 member 8, [Score=385, Expect=4e-127]; ENSG00000151012, SLC7A11, solute carrier family 7 member 11, [Score=384, Expect=2e-127]; ENSG00000103257, SLC7A5, solute carrier family 7 member 5, [Score=383, Expect=8e-127]; ENSG00000103064, SLC7A6, solute carrier family 7 member 6, [Score=371, Expect=7e-122]} {Mouse: ENSMUSG00000027737, Slc7a11, solute carrier family 7 (cationic amino acid transporter, y+ system), member 11, [Score=416, Expect=1e-139]} {Dmel: FBgn0039487, gb, genderblind, [RH, Score=408, Expect=2e-136]} {Celegans: WBGene00000002, aat-1, Amino Acid Transporter, [Score=365, Expect=2e-120]} {Smed: dd_Smed_v6_4211_0_1, dd_Smed_v6_4211_0_1, [Score=436, Expect=2e-147]} {RNA1509_53982} {RNA1310_8199.1} {RNA815_2788}
7. MligTC455_24236 167 3.48 Mlig455_029060

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.394

 TNK2 0.968 - - - - - 0.968 Mlig455_029060 {REF} {Length: 4828} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=100.5]; Protein kinase domain [PF00069.27, score=35.9]; GTPase binding [PF09027.12, score=21.2]} {Human: ENSG00000061938, TNK2, tyrosine kinase non receptor 2, [Score=100, Expect=2e-21]; ENSG00000007264, MATK, megakaryocyte-associated tyrosine kinase, [Score=99.0, Expect=5e-21]} {Mouse: ENSMUSG00000022791, Tnk2, tyrosine kinase, non-receptor, 2, [Score=100, Expect=5e-21]; ENSMUSG00000004933, Matk, megakaryocyte-associated tyrosine kinase, [Score=98.2, Expect=5e-21]} {Dmel: FBgn0263998, Ack-like, Activated Cdc42 kinase-like, [Score=136, Expect=3e-32]} {Celegans: WBGene00000186, ark-1, Ack-related non-receptor tyrosine kinase, [Score=112, Expect=5e-25]} {Smed: dd_Smed_v6_10115_0_1, dd_Smed_v6_10115_0_1, [Score=151, Expect=3e-37]} {RNA1509_39176, RNA1509_58109} {RNA1310_5146, RNA1509_39176, RNA1509_58109} {RNA1509_39176, RNA1509_58109, RNA815_20800}
8. MligTC455_50260 74 1.54 Mlig455_028776

Neo: -

Age: -

 0.96 - - - 0.960 - - Mlig455_028776 {REF} {Length: 1244} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_35931} {RNA1310_129842} {RNA815_41286}
9. MligTC455_24829 258 5.39 Mlig455_001260

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.723

 CCDC80 0.958 - - - - - 0.958 Mlig455_001260 {REF} {Length: 10454} {Human: ENSG00000091986, CCDC80, coiled-coil domain containing 80, [Score=52.8, Expect=1e-05]} {Dmel: FBgn0053196, dpy, dumpy, [Score=52.4, Expect=9e-06]} {RNA1509_23601} {RNA1310_241} {RNA815_110.1}
10. MligTC455_16765 77 1.61 Mlig455_070197

Neo: -

Age: -

 TRHR 0.951 0.951 - - - - - Mlig455_070197 {REF} {Length: 1762} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=60.7]} {Human: ENSG00000174417, TRHR, thyrotropin releasing hormone receptor, [Score=53.9, Expect=2e-07]} {Mouse: ENSMUSG00000038760, Trhr, thyrotropin releasing hormone receptor, [Score=54.3, Expect=1e-07]; ENSMUSG00000039079, Trhr2, thyrotropin releasing hormone receptor 2, [Score=53.1, Expect=3e-07]} {Dmel: FBgn0035385, FMRFaR, FMRFamide Receptor, [Score=74.3, Expect=3e-14]} {Celegans: WBGene00016246, daf-37, G-protein coupled receptor daf-37, [Score=54.3, Expect=7e-08]} {Smed: dd_Smed_v6_25364_0_1, dd_Smed_v6_25364_0_1, [Score=197, Expect=1e-59]} {RNA1310_22159} {RNA815_10331}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA