TomoSeq data search

Data search

Results for MligTC455_16765

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_16765

77

1.61

Mlig455_070197

Neo: -

Age: -

TRHR

Mlig455_070197 {REF} {Length: 1762} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=60.7]} {Human: ENSG00000174417, TRHR, thyrotropin releasing hormone receptor, [Score=53.9, Expect=2e-07]} {Mouse: ENSMUSG00000038760, Trhr, thyrotropin releasing hormone receptor, [Score=54.3, Expect=1e-07]; ENSMUSG00000039079, Trhr2, thyrotropin releasing hormone receptor 2, [Score=53.1, Expect=3e-07]} {Dmel: FBgn0035385, FMRFaR, FMRFamide Receptor, [Score=74.3, Expect=3e-14]} {Celegans: WBGene00016246, daf-37, G-protein coupled receptor daf-37, [Score=54.3, Expect=7e-08]} {Smed: dd_Smed_v6_25364_0_1, dd_Smed_v6_25364_0_1, [Score=197, Expect=1e-59]} {RNA1310_22159} {RNA815_10331}

Cumulative graph for MligTC455_16765

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.398	1.932	0.99962	1.00000
RegionR2	2.06	1.932	0.17344	0.52047
RegionR3	0.976	1.932	0.38919	0.91980
RegionR4	3.843	1.932	0.00809	0.05202
RegionR5	1.147	1.932	0.31004	0.64853
RegionR6	-1.7	1.932	0.94121	1.00000
RegionR7	-2.972	1.932	0.99984	1.00000
RegionR8	-2.955	1.932	0.99982	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.326	1.932	0.99994	1.00000
RegenerationR2	0.108	1.932	0.86037	1.00000
RegenerationR3	2.031	1.932	0.04903	0.38517
RegenerationR4	-0.037	1.932	0.90514	1.00000
RegenerationR5	0.69	1.932	0.46038	0.83645
RegenerationR6	4.094	1.932	0.00204	0.05139
RegenerationBL	3.158	1.932	0.16616	0.48915
RegenerationTP	1.837	1.932	0.49124	0.89638

Genes with expression patterns similar to MligTC455_16765

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_16765	77	1.61	Mlig455_070197	Neo: - Age: -	TRHR	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_070197 {REF} {Length: 1762} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=60.7]} {Human: ENSG00000174417, TRHR, thyrotropin releasing hormone receptor, [Score=53.9, Expect=2e-07]} {Mouse: ENSMUSG00000038760, Trhr, thyrotropin releasing hormone receptor, [Score=54.3, Expect=1e-07]; ENSMUSG00000039079, Trhr2, thyrotropin releasing hormone receptor 2, [Score=53.1, Expect=3e-07]} {Dmel: FBgn0035385, FMRFaR, FMRFamide Receptor, [Score=74.3, Expect=3e-14]} {Celegans: WBGene00016246, daf-37, G-protein coupled receptor daf-37, [Score=54.3, Expect=7e-08]} {Smed: dd_Smed_v6_25364_0_1, dd_Smed_v6_25364_0_1, [Score=197, Expect=1e-59]} {RNA1310_22159} {RNA815_10331}
2.	MligTC455_11581	90	1.87	Mlig455_025668	Neo: - Age: Down-Up-Down	SLC43A3	1.777	-	-	0.957	-	0.820	-	Mlig455_025668 {REF} {Length: 3136} {Pfam: Major Facilitator Superfamily [PF07690.18, score=38.0]} {Human: ENSG00000134802, SLC43A3, solute carrier family 43 member 3, [Score=89.4, Expect=2e-18]} {Smed: dd_Smed_v6_14253_0_1, dd_Smed_v6_14253_0_1, [RH, Score=93.2, Expect=3e-20]} {RNA1509_56899} {RNA1310_11883.1} {RNA815_12030}
3.	MligTC455_27902	136	2.84	Mlig455_019786	Neo: - Age: -	KAT2B	1.719	-	-	0.764	-	0.955	-	Mlig455_019786 {REF} {Length: 4280} {Pfam: PCAF (P300/CBP-associated factor) N-terminal domain [PF06466.13, score=194.4]; Bromodomain [PF00439.27, score=75.9]; Acetyltransferase (GNAT) family [PF00583.27, score=26.5]} {Human: ENSG00000114166, KAT2B, lysine acetyltransferase 2B, [RH, Score=439, Expect=4e-140]; ENSG00000108773, KAT2A, lysine acetyltransferase 2A, [RH, Score=422, Expect=1e-133]} {Mouse: ENSMUSG00000000708, Kat2b, K(lysine) acetyltransferase 2B, [RH, Score=447, Expect=8e-144]} {Dmel: FBgn0020388, Gcn5, Gcn5 acetyltransferase, [RH, Score=263, Expect=3e-75]} {Celegans: WBGene00021636, pcaf-1, P300/CBP Associated Factor homolog, [RH, Score=229, Expect=2e-63]} {Smed: dd_Smed_v6_11453_0_1, dd_Smed_v6_11453_0_1, [RH, Score=426, Expect=6e-140]} {RNA1509_19153} {RNA1310_2061.1} {RNA815_10396.1}
4.	MligTC455_27861	431	8.98	Mlig455_016420	Neo: - Age: - Region-enriched R3: 2.104/0.02341	SLC22A13	1.705	-	-	-	0.749	-	0.956	Mlig455_016420 {REF} {Length: 2162} {Pfam: Sugar (and other) transporter [PF00083.26, score=98.2]; Major Facilitator Superfamily [PF07690.18, score=76.1]} {Human: ENSG00000172940, SLC22A13, solute carrier family 22 member 13, [Score=239, Expect=1e-71]} {Mouse: ENSMUSG00000074028, Slc22a13, solute carrier family 22 (organic cation transporter), member 13, [Score=238, Expect=4e-71]} {Dmel: FBgn0019952, Orct, Organic cation transporter, [Score=251, Expect=2e-76]} {Celegans: WBGene00003842, oct-1, Organic cation transporter 1, [Score=174, Expect=1e-47]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=192, Expect=2e-54]} {RNA1509_38920, RNA1509_52977} {RNA1310_14607, RNA1509_38920, RNA1509_52977} {RNA1509_38920, RNA1509_52977, RNA815_16215}
5.	MligTC455_17395	285	5.94	Mlig455_026330, Mlig455_026361, Mlig455_052704	Neo: - Age: logFC(26M/2M)=-0.879 Regeneration-upregulated BL: 6.013 Regeneration-enriched BL: 6.013		1.704	-	-	0.965	-	-	0.739	Mlig455_026330 {REF} {Length: 1966} {Pfam: TLC domain [PF03798.18, score=84.2]} {Mouse: ENSMUSG00000028132, Tmem56, transmembrane protein 56, [RH, Score=108, Expect=3e-27]} {Smed: dd_Smed_v6_10262_0_1, dd_Smed_v6_10262_0_1, [RH, Score=142, Expect=2e-40]} {RNA1509_51527} {RNA1310_25932} {RNA815_12899} Mlig455_026361 {REF} {Length: 768} {Pfam: TLC domain [PF03798.18, score=37.4]} {Smed: dd_Smed_v6_10262_0_1, dd_Smed_v6_10262_0_1, [Score=109, Expect=2e-29]} {RNA1509_51527} {RNA1310_25932} {RNA815_12899} Mlig455_052704 {REF} {Length: 2658} {Pfam: TLC domain [PF03798.18, score=84.2]} {Mouse: ENSMUSG00000028132, Tmem56, transmembrane protein 56, [RH, Score=108, Expect=3e-27]} {Smed: dd_Smed_v6_10262_0_1, dd_Smed_v6_10262_0_1, [RH, Score=142, Expect=2e-40]} {RNA1509_30404, RNA1509_51527} {RNA1310_25932, RNA1509_30404} {RNA1509_30404, RNA815_12899}
6.	MligTC455_39500	113	2.35	Mlig455_032931, Mlig455_032946	Neo: - Age: - Region-enriched R2: 4.858/0.03664		0.982	0.982	-	-	-	-	-	Mlig455_032931 {REF} {Length: 1361} {Smed: dd_Smed_v6_10177_0_1, dd_Smed_v6_10177_0_1, [Score=60.5, Expect=4e-12]} {RNA1509_58254} {RNA1310_28096.1} {RNA815_22625} Mlig455_032946 {REF} {Length: 1307} {Pfam: Domain of unknown function (DUF1330) [PF07045.13, score=19.0]} {Smed: dd_Smed_v6_10177_0_1, dd_Smed_v6_10177_0_1, [RH, Score=161, Expect=7e-50]} {RNA1509_58254} {RNA1310_28096.1, RNA1509_58254} {RNA1509_58254, RNA815_22625}
7.	MligTC455_15103	106	2.21	Mlig455_003045, Mlig455_003250, Mlig455_003337, Mlig455_062847	Neo: Irradiation Age: -		0.974	-	-	0.974	-	-	-	Mlig455_003045 {REF} {Length: 2217} {TRANSSPLICED} {RNA1509_12604} {RNA1310_21039.1} {RNA815_8811} Mlig455_003250 {REF} {Length: 2166} {TRANSSPLICED} {RNA1509_12604} {RNA1310_21039.1} {RNA815_8811} Mlig455_003337 {REF} {Length: 2226} {TRANSSPLICED} {RNA1509_12604, RNA1509_54940} {RNA1310_21039.1, RNA1509_12604, RNA1509_54940} {RNA1509_12604, RNA1509_54940, RNA815_8811} Mlig455_062847 {REF} {Length: 2161} {TRANSSPLICED} {RNA1509_12604} {RNA1310_21039.1} {RNA815_8811}
8.	MligTC455_51261	88	1.84	Mlig455_036952	Neo: - Age: Down-Down-Down		0.97	0.970	-	-	-	-	-	Mlig455_036952 {REF} {Length: 3945} {TRANSSPLICED} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=92.5]; Domain of unknown function (DUF4615) [PF15393.8, score=57.4]} {Mouse: ENSMUSG00000063236, 1110038F14Rik, RIKEN cDNA 1110038F14 gene, [RH, Score=55.1, Expect=4e-08]} {Dmel: FBgn0038673, CG14286, [RH, Score=53.9, Expect=5e-08]} {Smed: dd_Smed_v6_10522_0_1, dd_Smed_v6_10522_0_1, [Score=63.2, Expect=3e-10]} {RNA1509_16748} {RNA1310_30400} {RNA815_28361}
9.	MligTC455_53382	110	2.28	Mlig455_006777	Neo: - Age: -		0.967	0.967	-	-	-	-	-	Mlig455_006777 {REF} {Length: 2841} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=54.8]} {Dmel: FBgn0039747, AdoR, Adenosine receptor, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_8885_0_1, dd_Smed_v6_8885_0_1, [Score=137, Expect=6e-36]} {RNA1509_47534} {RNA1310_15311} {RNA815_12841}
10.	MligTC455_23887	105	2.18	Mlig455_047042	Neo: - Age: -	PGBD4	0.966	-	-	-	-	-	0.966	Mlig455_047042 {REF} {Length: 2779} {Pfam: Transposase IS4 [PF13843.8, score=66.7]} {Human: ENSG00000182405, PGBD4, piggyBac transposable element derived 4, [Score=78.2, Expect=7e-16]} {Smed: dd_Smed_v6_20008_0_4, dd_Smed_v6_20008_0_4, [RH, Score=52.4, Expect=6e-09]} {RNA1509_12879} {RNA1310_633} {RNA815_21871}
11.	MligTC455_12514	30	0.63	Mlig455_037415	Neo: - Age: -	CHRNA6	0.965	0.965	-	-	-	-	-	Mlig455_037415 {REF} {Length: 1606} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=77.5]} {Human: ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=77.4, Expect=4e-16]; ENSG00000166736, HTR3A, 5-hydroxytryptamine receptor 3A, [Score=75.1, Expect=2e-15]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=73.9, Expect=7e-15]} {Mouse: ENSMUSG00000032269, Htr3a, 5-hydroxytryptamine (serotonin) receptor 3A, [Score=80.5, Expect=3e-17]} {Dmel: FBgn0028875, nAChRalpha5, nicotinic Acetylcholine Receptor alpha5, [Score=84.7, Expect=7e-19]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=72.8, Expect=5e-15]} {Smed: dd_Smed_v6_23922_0_1, dd_Smed_v6_23922_0_1, [Score=82.0, Expect=3e-18]} {RNA1509_53098} {RNA1310_110770} {RNA815_49679}
12.	MligTC455_50853	70	1.46	Mlig455_032032	Neo: - Age: Down-Up-Up, logFC(26M/2M)=1.224 Region-enriched R3: 4.394/0.01527		0.964	-	-	-	-	-	0.964	Mlig455_032032 {REF} {Length: 978} {RNA1310_43094.1} {RNA815_28977}
13.	MligTC455_15933	79	1.65	Mlig455_045044	Neo: - Age: -		0.961	0.961	-	-	-	-	-	Mlig455_045044 {REF} {Length: 1551} {RNA1509_16354} {RNA1310_48957} {RNA815_45783}
14.	MligTC455_33922	235	4.89	Mlig455_032137	Neo: - Age: logFC(26M/2M)=-0.421	SLC7A8	0.955	0.955	-	-	-	-	-	Mlig455_032137 {REF} {Length: 3423} {Pfam: Amino acid permease [PF13520.8, score=218.6]; Amino acid permease [PF00324.23, score=127.0]} {Human: ENSG00000092068, SLC7A8, solute carrier family 7 member 8, [Score=385, Expect=4e-127]; ENSG00000151012, SLC7A11, solute carrier family 7 member 11, [Score=384, Expect=2e-127]; ENSG00000103257, SLC7A5, solute carrier family 7 member 5, [Score=383, Expect=8e-127]; ENSG00000103064, SLC7A6, solute carrier family 7 member 6, [Score=371, Expect=7e-122]} {Mouse: ENSMUSG00000027737, Slc7a11, solute carrier family 7 (cationic amino acid transporter, y+ system), member 11, [Score=416, Expect=1e-139]} {Dmel: FBgn0039487, gb, genderblind, [RH, Score=408, Expect=2e-136]} {Celegans: WBGene00000002, aat-1, Amino Acid Transporter, [Score=365, Expect=2e-120]} {Smed: dd_Smed_v6_4211_0_1, dd_Smed_v6_4211_0_1, [Score=436, Expect=2e-147]} {RNA1509_53982} {RNA1310_8199.1} {RNA815_2788}
15.	MligTC455_43747	186	3.88	Mlig455_019998	Neo: - Age: - Region-enriched R2: 3.849/0.00050	GLRA3	0.953	0.953	-	-	-	-	-	Mlig455_019998 {REF} {Length: 2977} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=148.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=117.6]} {Human: ENSG00000145451, GLRA3, glycine receptor alpha 3, [RH, Score=337, Expect=2e-111]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [RH, Score=332, Expect=1e-109]} {Mouse: ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [RH, Score=338, Expect=1e-111]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [RH, Score=330, Expect=5e-109]} {Dmel: FBgn0024963, GluClalpha, [RH, Score=292, Expect=2e-94]} {Celegans: WBGene00001586, ggr-1, Glycine receptor subunit beta-type 4, [RH, Score=260, Expect=1e-81]} {Smed: dd_Smed_v6_11342_0_1, dd_Smed_v6_11342_0_1, [Score=254, Expect=4e-80]} {RNA1509_22140} {RNA1310_19557.2} {RNA815_6481}
16.	MligTC455_15897	286	5.95	Mlig455_057204	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.505	SLC22A5	0.952	-	-	-	-	-	0.952	Mlig455_057204 {REF} {Length: 2977} {Pfam: Sugar (and other) transporter [PF00083.26, score=127.3]; Major Facilitator Superfamily [PF07690.18, score=81.6]} {Human: ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=189, Expect=7e-53]; ENSG00000172940, SLC22A13, solute carrier family 22 member 13, [Score=186, Expect=2e-51]} {Mouse: ENSMUSG00000023828, Slc22a3, solute carrier family 22 (organic cation transporter), member 3, [Score=187, Expect=4e-52]; ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=186, Expect=1e-51]; ENSMUSG00000018900, Slc22a5, solute carrier family 22 (organic cation transporter), member 5, [Score=181, Expect=7e-50]} {Dmel: FBgn0086365, Orct2, Organic cation transporter 2, [Score=237, Expect=7e-71]} {Celegans: WBGene00003842, oct-1, Organic cation transporter 1, [Score=182, Expect=2e-50]} {Smed: dd_Smed_v6_10903_0_1, dd_Smed_v6_10903_0_1, [RH, Score=243, Expect=1e-73]} {RNA1509_37900, RNA1509_7569} {RNA1310_6516, RNA1509_37900} {RNA1509_37900, RNA815_4307.1}
17.	MligTC455_12826	117	2.43	Mlig455_045706	Neo: - Age: -		0.951	0.951	-	-	-	-	-	Mlig455_045706 {REF} {Length: 505} {NoTransDecoderORF} {RNA1310_58115.1} {RNA815_51930}

Berezikov Lab - 2020-2021 © ERIBA