TomoSeq data search

Data search

Results for MligTC455_12873

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_12873

163

3.40

Mlig455_051920, Mlig455_053122

Neo: -

Age: Up-Down-Up

BMP3

Mlig455_051920 {REF} {Length: 1860} {Pfam: Transforming growth factor beta like domain [PF00019.22, score=46.4]} {Human: ENSG00000152785, BMP3, bone morphogenetic protein 3, [Score=62.4, Expect=7e-10]} {Mouse: ENSMUSG00000029335, Bmp3, bone morphogenetic protein 3, [Score=63.2, Expect=2e-10]} {Dmel: FBgn0031461, daw, dawdle, [Score=49.7, Expect=5e-06]} {RNA1310_15971} {RNA815_18833}

Mlig455_053122 {REF} {Length: 2568} {Pfam: Transforming growth factor beta like domain [PF00019.22, score=46.5]} {Human: ENSG00000152785, BMP3, bone morphogenetic protein 3, [Score=62.8, Expect=8e-10]} {Mouse: ENSMUSG00000029335, Bmp3, bone morphogenetic protein 3, [Score=63.5, Expect=3e-10]} {RNA1310_15971} {RNA815_18833}

Cumulative graph for MligTC455_12873

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.433	2.559	0.39137	1.00000
RegionR2	0.094	2.559	0.82894	1.00000
RegionR3	1.326	2.559	0.18212	0.71499
RegionR4	2.633	2.559	0.01419	0.07909
RegionR5	-0.607	2.559	0.96747	1.00000
RegionR6	-1.573	2.559	0.99729	1.00000
RegionR7	1.436	2.559	0.20969	0.82360
RegionR8	1.123	2.559	0.43339	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.976	2.559	0.99991	1.00000
RegenerationR2	0.559	2.559	0.48840	0.86711
RegenerationR3	-0.391	2.559	0.64029	0.92498
RegenerationR4	-0.643	2.559	0.47530	0.85627
RegenerationR5	0.636	2.559	0.47188	0.84273
RegenerationR6	0.98	2.559	0.37136	0.71438
RegenerationBL	-0.139	2.559	0.91236	1.00000
RegenerationTP	-2.221	2.559	0.08374	0.45865

Genes with expression patterns similar to MligTC455_12873

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_12873	163	3.4	Mlig455_051920, Mlig455_053122	Neo: - Age: Up-Down-Up	BMP3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_051920 {REF} {Length: 1860} {Pfam: Transforming growth factor beta like domain [PF00019.22, score=46.4]} {Human: ENSG00000152785, BMP3, bone morphogenetic protein 3, [Score=62.4, Expect=7e-10]} {Mouse: ENSMUSG00000029335, Bmp3, bone morphogenetic protein 3, [Score=63.2, Expect=2e-10]} {Dmel: FBgn0031461, daw, dawdle, [Score=49.7, Expect=5e-06]} {RNA1310_15971} {RNA815_18833} Mlig455_053122 {REF} {Length: 2568} {Pfam: Transforming growth factor beta like domain [PF00019.22, score=46.5]} {Human: ENSG00000152785, BMP3, bone morphogenetic protein 3, [Score=62.8, Expect=8e-10]} {Mouse: ENSMUSG00000029335, Bmp3, bone morphogenetic protein 3, [Score=63.5, Expect=3e-10]} {RNA1310_15971} {RNA815_18833}
2.	MligTC455_33850	80	1.67	Mlig455_015720	Neo: - Age: - Region-enriched R2: 4.134/0.00338		0.97	-	-	-	-	0.970	-	Mlig455_015720 {REF} {Length: 829} {RNA1509_37932} {RNA1310_98453}
3.	MligTC455_19382	51	1.07	Mlig455_032372	Neo: - Age: - Region-enriched R2: 7.387/0.00125	GABBR2	0.963	-	-	-	-	0.963	-	Mlig455_032372 {REF} {Length: 3616} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=166.5]; Receptor family ligand binding region [PF01094.30, score=93.5]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=323, Expect=4e-95]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=322, Expect=7e-95]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=352, Expect=3e-104]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=317, Expect=3e-94]} {Smed: dd_Smed_v6_59890_0_1, dd_Smed_v6_59890_0_1, [Score=159, Expect=1e-44]} {RNA1509_48457} {RNA1310_28999} {RNA815_30452}
4.	MligTC455_12630	189	3.94	Mlig455_036734	Neo: Irradiation Age: Up-Down-Down Region-specific R4: 4.992 Region-enriched R4: 2.581/0.02251	PPP1CB	0.959	-	-	-	-	-	0.959	Mlig455_036734 {REF} {Length: 2633} {Human: ENSG00000213639, PPP1CB, protein phosphatase 1 catalytic subunit beta, [Score=87.4, Expect=7e-19]; ENSG00000172531, PPP1CA, protein phosphatase 1 catalytic subunit alpha, [Score=85.9, Expect=2e-18]; ENSG00000186298, PPP1CC, protein phosphatase 1 catalytic subunit gamma, [Score=84.7, Expect=6e-18]} {Mouse: ENSMUSG00000014956, Ppp1cb, protein phosphatase 1 catalytic subunit beta, [Score=87.4, Expect=5e-19]; ENSMUSG00000096994, Ppp1ca, protein phosphatase 1 catalytic subunit alpha, [Score=85.9, Expect=2e-18]; ENSMUSG00000040385, Ppp1ca, protein phosphatase 1 catalytic subunit alpha, [Score=85.9, Expect=2e-18]; ENSMUSG00000004455, Ppp1cc, protein phosphatase 1 catalytic subunit gamma, [Score=84.3, Expect=5e-18]; ENSMUSG00000021816, Ppp3cb, protein phosphatase 3, catalytic subunit, beta isoform, [Score=83.2, Expect=4e-17]} {Dmel: FBgn0005778, PpD5, Protein phosphatase D5, [Score=94.0, Expect=2e-21]} {Celegans: WBGene00009948, F52H3.6, Serine/threonine-protein phosphatase, [Score=92.8, Expect=3e-21]} {Smed: dd_Smed_v6_2425_0_1, dd_Smed_v6_2425_0_1, [Score=84.3, Expect=1e-18]} {RNA1509_51382, RNA1509_59181} {RNA1310_5947.1, RNA1509_51382, RNA1509_59181} {RNA1509_51382, RNA1509_59181, RNA815_2916}
5.	MligTC455_24143	324	6.74	Mlig455_060903	Neo: - Age: Up-Up-Down Region-specific R4: 5.425 Region-enriched R4: 4.008/0.00000 Regeneration-downregulated R4: -2.752 Regeneration-depleted R4: -2.752		0.958	-	-	-	-	-	0.958	Mlig455_060903 {REF} {Length: 2308} {RNA1509_35501} {RNA1310_30027.1} {RNA815_13361}
6.	MligTC455_40708	153	3.19	Mlig455_067130	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.714		0.957	-	-	-	-	0.957	-	Mlig455_067130 {REF} {Length: 503} {RNA1509_33165} {RNA1310_72431} {RNA815_38214}
7.	MligTC455_51017	201	4.19	Mlig455_035121, Mlig455_062432	Neo: - Age: -	TTC38	0.956	-	-	-	-	0.956	-	Mlig455_035121 {REF} {Length: 2327} {TRANSSPLICED} {Pfam: TPR repeat [PF13414.8, score=20.8]; Tetratricopeptide repeat [PF13428.8, score=19.9]} {Human: ENSG00000075234, TTC38, tetratricopeptide repeat domain 38, [RH, Score=165, Expect=4e-45]} {Mouse: ENSMUSG00000035944, Ttc38, tetratricopeptide repeat domain 38, [RH, Score=159, Expect=6e-43]} {Celegans: WBGene00013216, Y54G11A.7, [RH, Score=155, Expect=6e-42]} {RNA1509_24156} {RNA1310_12663} {RNA815_12974} Mlig455_062432 {REF} {Length: 2840} {Pfam: TPR repeat [PF13414.8, score=18.4]} {Human: ENSG00000075234, TTC38, tetratricopeptide repeat domain 38, [Score=124, Expect=2e-30]} {Mouse: ENSMUSG00000035944, Ttc38, tetratricopeptide repeat domain 38, [Score=122, Expect=6e-30]} {Celegans: WBGene00013216, Y54G11A.7, [Score=114, Expect=2e-27]} {RNA1509_24156} {RNA1310_12663} {RNA815_12974}

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