M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_40708

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40708 153 3.19 Mlig455_067130

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.714

 Mlig455_067130 {REF} {Length: 503} {RNA1509_33165} {RNA1310_72431} {RNA815_38214}

Cumulative graph for MligTC455_40708

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.841 2.29 0.61795 1.00000
RegionR2 1.04 2.29 0.23414 0.60734
RegionR3 -0.166 2.29 0.80192 1.00000
RegionR4 -1.749 2.29 0.03194 0.14207
RegionR5 -1.826 2.29 0.00626 0.04109
RegionR6 1.104 2.29 0.07631 0.51275
RegionR7 1.241 2.29 0.10538 0.61731
RegionR8 1.196 2.29 0.21147 0.81534

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.086 2.29 0.63356 1.00000
RegenerationR2 -0.135 2.29 0.85362 1.00000
RegenerationR3 1.892 2.29 0.01949 0.25577
RegenerationR4 1.572 2.29 0.06556 0.40849
RegenerationR5 1.782 2.29 0.02734 0.28053
RegenerationR6 -1.52 2.29 0.11394 0.41583
RegenerationBL -5.082 2.29 0.02600 0.17773
RegenerationTP -0.172 2.29 0.88273 1.00000


Genes with expression patterns similar to MligTC455_40708

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40708 153 3.19 Mlig455_067130

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.714

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_067130 {REF} {Length: 503} {RNA1509_33165} {RNA1310_72431} {RNA815_38214}
2. MligTC455_52453 127 2.65 Mlig455_034004, Mlig455_060386

Neo: -

Age: -

Region-enriched R3: 3.580/0.00648

 1.83 - - - 0.960 - 0.870

Mlig455_034004 {REF} {Length: 453} {NoTransDecoderORF} {RNA1509_42969} {RNA1310_78537} {RNA815_37747}

Mlig455_060386 {REF} {Length: 384} {RNA1509_24113} {RNA1310_4423} {RNA815_37747}
3. MligTC455_21078 32 0.67 Mlig455_002675

Neo: -

Age: -

 1.801 - - - 0.975 - 0.826 Mlig455_002675 {REF} {Length: 3968} {NoTransDecoderORF} {RNA1509_49659} {RNA1310_88461} {RNA815_62212}
4. MligTC455_27536 53 1.11 Mlig455_006510

Neo: -

Age: Up-Down-Up

 CRB2 0.991 - - 0.991 - - - Mlig455_006510 {REF} {Length: 3962} {Pfam: EGF-like domain [PF00008.29, score=147.3]; Human growth factor-like EGF [PF12661.9, score=81.6]; Laminin G domain [PF02210.26, score=28.2]; EGF domain [PF12947.9, score=19.3]} {Human: ENSG00000148204, CRB2, crumbs 2, cell polarity complex component, [RH, Score=354, Expect=2e-102]} {Mouse: ENSMUSG00000035403, Crb2, crumbs family member 2, [RH, Score=356, Expect=2e-103]} {Dmel: FBgn0259685, crb, crumbs, [Score=397, Expect=1e-115]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=189, Expect=5e-48]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=197, Expect=8e-51]} {RNA1509_54879} {RNA1310_14888.1, RNA1509_54879} {RNA1509_54879, RNA815_693.1}
5. MligTC455_52452 104 2.16 Mlig455_033995

Neo: -

Age: -

Region-enriched R3: 3.508/0.00185

 0.986 - - - 0.986 - - Mlig455_033995 {REF} {Length: 1790} {NoTransDecoderORF} {RNA1509_42969} {RNA1310_4423, RNA1509_42969} {RNA1509_42969, RNA815_23306}
6. MligTC455_24511 45 0.93 Mlig455_030652

Neo: -

Age: -

 0.984 - - 0.984 - - - Mlig455_030652 {REF} {Length: 1591} {TRANSSPLICED} {RNA1509_32433} {RNA1310_19716} {RNA815_13109}
7. MligTC455_46235 10 0.22 Mlig455_036340, Mlig455_036383

Neo: -

Age: -

 0.982 - - 0.982 - - -

Mlig455_036340 {REF} {Length: 1148} {Pfam: Glycine rich protein family [PF07172.13, score=21.7]} {RNA1310_96230}

Mlig455_036383 {REF} {Length: 2004} {Pfam: Glycine rich protein family [PF07172.13, score=21.3]} {RNA1310_96230} {RNA815_9424.1}
8. MligTC455_51399 52 1.09 Mlig455_051021

Neo: -

Age: Up-Down-Down

 KCNT1 0.972 - - 0.972 - - - Mlig455_051021 {REF} {Length: 4250} {Pfam: Calcium-activated BK potassium channel alpha subunit [PF03493.20, score=92.3]; Ion channel [PF07885.18, score=44.0]} {Human: ENSG00000107147, KCNT1, potassium sodium-activated channel subfamily T member 1, [Score=901, Expect=0.0]; ENSG00000162687, KCNT2, potassium sodium-activated channel subfamily T member 2, [Score=862, Expect=0.0]} {Mouse: ENSMUSG00000058740, Kcnt1, potassium channel, subfamily T, member 1, [Score=870, Expect=0.0]; ENSMUSG00000052726, Kcnt2, potassium channel, subfamily T, member 2, [Score=870, Expect=0.0]} {Dmel: FBgn0261698, SLO2, slowpoke 2, [RH, Score=818, Expect=0.0]} {Celegans: WBGene00004831, slo-2, SLO-2 potassium channel; SLOwpoke potassium channel family, [Score=666, Expect=0.0]} {Smed: dd_Smed_v6_9739_0_1, dd_Smed_v6_9739_0_1, [Score=1093, Expect=0.0]} {RNA1509_10851} {RNA1310_10826.1} {RNA815_3987}
9. MligTC455_17699 65 1.36 Mlig455_043426

Neo: -

Age: Up-Down-Down

 0.97 - - - - 0.970 - Mlig455_043426 {REF} {Length: 3824} {RNA1509_38864} {RNA1310_23415, RNA1509_38864} {RNA1509_38864, RNA815_19995}
10. MligTC455_54100 57 1.18 Mlig455_036019, Mlig455_036108

Neo: -

Age: -

 ANGPTL2 0.966 - - 0.966 - - -

Mlig455_036019 {REF} {Length: 1076} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=137.0]} {Human: ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=121, Expect=3e-34]; ENSG00000160339, FCN2, ficolin 2, [Score=119, Expect=7e-33]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=117, Expect=9e-31]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=122, Expect=2e-32]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=121, Expect=3e-32]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=116, Expect=2e-30]} {Dmel: FBgn0003326, sca, scabrous, [Score=112, Expect=1e-28]} {Celegans: WBGene00017013, ensh-1, [Score=48.9, Expect=5e-07]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=114, Expect=1e-29]} {RNA1509_26827} {RNA1310_31840} {RNA815_17173.1}

Mlig455_036108 {REF} {Length: 1344} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=152.2]} {Human: ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=134, Expect=2e-34]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=133, Expect=4e-34]; ENSG00000160339, FCN2, ficolin 2, [Score=132, Expect=9e-35]; ENSG00000130720, FIBCD1, fibrinogen C domain containing 1, [Score=129, Expect=1e-32]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=137, Expect=1e-35]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=134, Expect=2e-34]} {Dmel: FBgn0003326, sca, scabrous, [RH, Score=124, Expect=1e-30]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=47.4, Expect=8e-07]} {RNA1509_26827} {RNA1310_33619.1} {RNA815_17173.3}
11. MligTC455_28636 135 2.8 Mlig455_046879

Neo: -

Age: -

Region-enriched R2: 3.948/0.00711

 PHKA1 0.965 - - 0.965 - - - Mlig455_046879 {REF} {Length: 7306} {TRANSSPLICED} {Pfam: Glycosyl hydrolases family 15 [PF00723.23, score=349.3]; Phosphorylase b kinase C-terminal domain [PF19292.1, score=85.7]} {Human: ENSG00000067177, PHKA1, phosphorylase kinase regulatory subunit alpha 1, [Score=593, Expect=0.0]; ENSG00000044446, PHKA2, phosphorylase kinase regulatory subunit alpha 2, [Score=583, Expect=0.0]} {Mouse: ENSMUSG00000031295, Phka2, phosphorylase kinase alpha 2, [Score=597, Expect=0.0]; ENSMUSG00000034055, Phka1, phosphorylase kinase alpha 1, [Score=591, Expect=0.0]} {Dmel: FBgn0030087, CG7766, [Score=623, Expect=0.0]} {Celegans: WBGene00015754, C14B9.8, Probable phosphorylase b kinase regulatory subunit alpha, [Score=751, Expect=0.0]} {Smed: dd_Smed_v6_6919_0_1, dd_Smed_v6_6919_0_1, [Score=1031, Expect=0.0]} {RNA1509_9598} {RNA1310_2181, RNA1509_9598} {RNA1509_9598, RNA815_2765}
12. MligTC455_42910 32 0.67 Mlig455_006397

Neo: -

Age: logFC(26M/2M)=-0.359

 ANK1 0.961 - - - - 0.961 - Mlig455_006397 {REF} {Length: 4067} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=209.4]; Ankyrin repeats (many copies) [PF13637.8, score=160.1]; Ankyrin repeat [PF13606.8, score=136.2]; Ankyrin repeats (many copies) [PF13857.8, score=125.6]; Ankyrin repeat [PF00023.32, score=124.1]; Mab-21 protein [PF03281.16, score=28.9]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=186, Expect=7e-47]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=179, Expect=1e-44]} {Dmel: FBgn0039590, CG10011, [Score=174, Expect=3e-43]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=153, Expect=3e-37]} {Smed: dd_Smed_v6_13721_0_1, dd_Smed_v6_13721_0_1, [Score=168, Expect=6e-42]} {RNA1509_38396} {RNA1310_3944.1} {RNA815_1969}
13. MligTC455_42911 64 1.33 Mlig455_006347, Mlig455_061245

Neo: -

Age: -

 0.961 - - - - 0.961 -

Mlig455_006347 {REF} {Length: 1191} {RNA1310_18511} {RNA815_34926}

Mlig455_061245 {REF} {Length: 1944} {RNA1310_18511} {RNA815_34926}
14. MligTC455_19382 51 1.07 Mlig455_032372

Neo: -

Age: -

Region-enriched R2: 7.387/0.00125

 GABBR2 0.959 - - - - 0.959 - Mlig455_032372 {REF} {Length: 3616} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=166.5]; Receptor family ligand binding region [PF01094.30, score=93.5]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=323, Expect=4e-95]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=322, Expect=7e-95]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=352, Expect=3e-104]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=317, Expect=3e-94]} {Smed: dd_Smed_v6_59890_0_1, dd_Smed_v6_59890_0_1, [Score=159, Expect=1e-44]} {RNA1509_48457} {RNA1310_28999} {RNA815_30452}
15. MligTC455_33203 151 3.15 Mlig455_033692, Mlig455_050137

Neo: -

Age: -

 0.958 - - 0.958 - - -

Mlig455_033692 {REF} {Length: 1036} {NoTransDecoderORF} {RNA1509_59732} {RNA1310_52952} {RNA815_34163}

Mlig455_050137 {REF} {Length: 1740} {NoTransDecoderORF} {RNA1509_59732, RNA1509_60018} {RNA1310_63905.1, RNA1509_59732, RNA1509_60018} {RNA1509_59732, RNA1509_60018, RNA815_34163}
16. MligTC455_33345 73 1.53 Mlig455_022775

Neo: -

Age: Up-Down-Down

 ITPR2 0.958 - - - - 0.958 - Mlig455_022775 {REF} {Length: 10477} {Pfam: RIH domain [PF01365.23, score=93.1]; RyR and IP3R Homology associated [PF08454.13, score=68.6]; Inositol 1,4,5-trisphosphate/ryanodine receptor [PF08709.13, score=68.1]; MIR domain [PF02815.21, score=57.0]} {Human: ENSG00000123104, ITPR2, inositol 1,4,5-trisphosphate receptor type 2, [Score=204, Expect=1e-51]} {Mouse: ENSMUSG00000030287, Itpr2, inositol 1,4,5-triphosphate receptor 2, [Score=206, Expect=3e-52]; ENSMUSG00000042644, Itpr3, inositol 1,4,5-triphosphate receptor 3, [Score=199, Expect=3e-50]} {Dmel: FBgn0010051, Itp-r83A, Inositol 1,4,5,-tris-phosphate receptor, [Score=157, Expect=1e-37]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=146, Expect=2e-34]} {Smed: dd_Smed_v6_3814_1_1, dd_Smed_v6_3814_1_1, [RH, Score=3019, Expect=0.0]} {RNA1509_31887} {RNA1310_193.1} {RNA815_9899}
17. MligTC455_12873 163 3.4 Mlig455_051920, Mlig455_053122

Neo: -

Age: Up-Down-Up

 BMP3 0.957 - - - - 0.957 -

Mlig455_051920 {REF} {Length: 1860} {Pfam: Transforming growth factor beta like domain [PF00019.22, score=46.4]} {Human: ENSG00000152785, BMP3, bone morphogenetic protein 3, [Score=62.4, Expect=7e-10]} {Mouse: ENSMUSG00000029335, Bmp3, bone morphogenetic protein 3, [Score=63.2, Expect=2e-10]} {Dmel: FBgn0031461, daw, dawdle, [Score=49.7, Expect=5e-06]} {RNA1310_15971} {RNA815_18833}

Mlig455_053122 {REF} {Length: 2568} {Pfam: Transforming growth factor beta like domain [PF00019.22, score=46.5]} {Human: ENSG00000152785, BMP3, bone morphogenetic protein 3, [Score=62.8, Expect=8e-10]} {Mouse: ENSMUSG00000029335, Bmp3, bone morphogenetic protein 3, [Score=63.5, Expect=3e-10]} {RNA1310_15971} {RNA815_18833}
18. MligTC455_13065 148 3.08 Mlig455_043686, Mlig455_043753, Mlig455_047472

Neo: -

Age: -

 RGS12, RGS3 0.955 - - - - 0.955 -

Mlig455_043686 {REF} {Length: 3598} {Pfam: PDZ domain [PF00595.26, score=38.7]; C2 domain [PF00168.32, score=38.5]; PDZ domain [PF17820.3, score=36.6]; PDZ domain [PF13180.8, score=23.2]} {Human: ENSG00000138835, RGS3, regulator of G protein signaling 3, [RH, Score=86.3, Expect=4e-17]} {Mouse: ENSMUSG00000059810, Rgs3, regulator of G-protein signaling 3, [RH, Score=85.1, Expect=6e-17]} {Dmel: FBgn0020278, loco, locomotion defects, [Score=62.8, Expect=7e-10]} {Smed: dd_Smed_v6_17732_0_1, dd_Smed_v6_17732_0_1, [RH, Score=105, Expect=9e-24]} {RNA1310_17293.2}

Mlig455_043753 {REF} {Length: 1508} {Pfam: PDZ domain [PF00595.26, score=39.7]; PDZ domain [PF17820.3, score=37.4]; PDZ domain [PF13180.8, score=24.1]} {Human: ENSG00000159788, RGS12, regulator of G protein signaling 12, [Score=64.3, Expect=1e-10]} {Mouse: ENSMUSG00000029101, Rgs12, regulator of G-protein signaling 12, [Score=64.7, Expect=7e-11]} {Dmel: FBgn0020278, loco, locomotion defects, [Score=62.0, Expect=4e-10]} {Smed: dd_Smed_v6_17732_0_1, dd_Smed_v6_17732_0_1, [Score=73.9, Expect=3e-14]} {RNA1310_80665}

Mlig455_047472 {REF} {Length: 2285} {TRANSSPLICED} {Pfam: C2 domain [PF00168.32, score=38.8]; PDZ domain [PF00595.26, score=38.8]; PDZ domain [PF17820.3, score=36.6]; PDZ domain [PF13180.8, score=23.2]} {Human: ENSG00000138835, RGS3, regulator of G protein signaling 3, [RH, Score=84.7, Expect=1e-16]} {Mouse: ENSMUSG00000059810, Rgs3, regulator of G-protein signaling 3, [RH, Score=85.5, Expect=4e-17]} {Dmel: FBgn0020278, loco, locomotion defects, [Score=62.4, Expect=9e-10]} {Smed: dd_Smed_v6_17732_0_1, dd_Smed_v6_17732_0_1, [RH, Score=103, Expect=5e-23]} {RNA1310_17293.2}
19. MligTC455_37358 147 3.06 Mlig455_036287, Mlig455_062056

Neo: -

Age: -

 0.954 - - 0.954 - - -

Mlig455_036287 {REF} {Length: 5254} {RNA1509_10387} {RNA1310_6525.1} {RNA815_3756.1}

Mlig455_062056 {REF} {Length: 720} {Pfam: Histone H1-like nucleoprotein HC2 [PF07382.13, score=22.8]} {RNA1509_25482} {RNA1310_25290} {RNA815_64127}
20. MligTC455_22668 41 0.86 Mlig455_034247, Mlig455_067284

Neo: -

Age: -

 0.953 - - - - 0.953 -

Mlig455_034247 {REF} {Length: 2159} {RNA1509_55358} {RNA1310_19226} {RNA815_1882}

Mlig455_067284 {REF} {Length: 3374} {RNA1509_55358} {RNA1310_19226} {RNA815_1882}
21. MligTC455_46048 31 0.64 Mlig455_060908

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_060908 {REF} {Length: 4385} {RNA1509_22124} {RNA1310_13120} {RNA815_10355}
22. MligTC455_16337 2460 51.26 Mlig455_024315, Mlig455_024328, Mlig455_024371, Mlig455_024486

Neo: -

Age: -

Region-enriched R3: 1.733/0.00001
Region-enriched R5: 1.588/0.00004
Region-enriched R2: 1.335/0.02187

Regeneration-downregulated BL: -3.705

Regeneration-depleted BL: -3.705

 0.952 - - - - 0.952 -

Mlig455_024315 {REF} {Length: 880} {RNA1509_16860} {RNA1310_54168} {RNA815_42404}

Mlig455_024328 {REF} {Length: 841} {RNA1509_16860} {RNA1310_54168} {RNA815_42404}

Mlig455_024371 {REF} {Length: 1111} {RNA1509_16860} {RNA1310_54168} {RNA815_42404}

Mlig455_024486 {REF} {Length: 1126} {RNA1509_16860} {RNA1310_54168} {RNA815_42404}
23. MligTC455_43882 195 4.05 Mlig455_035945, Mlig455_067329

Neo: -

Age: -

 MFSD11 0.951 - - - - 0.951 -

Mlig455_035945 {REF} {Length: 233} {NoTransDecoderORF}

Mlig455_067329 {REF} {Length: 3148} {TRANSSPLICED} {Pfam: Ion channel regulatory protein UNC-93 [PF05978.18, score=152.6]; Major Facilitator Superfamily [PF07690.18, score=43.1]} {Human: ENSG00000092931, MFSD11, major facilitator superfamily domain containing 11, [RH, Score=385, Expect=2e-130]} {Mouse: ENSMUSG00000020818, Mfsd11, major facilitator superfamily domain containing 11, [RH, Score=387, Expect=4e-131]} {Dmel: FBgn0038053, CG18549, [RH, Score=315, Expect=2e-103]} {Celegans: WBGene00010925, M153.2, [RH, Score=251, Expect=2e-78]} {Smed: dd_Smed_v6_6305_0_1, dd_Smed_v6_6305_0_1, [RH, Score=320, Expect=2e-105]} {RNA1509_26859, RNA1509_32034, RNA1509_36920, RNA1509_38483} {RNA1310_10975.1, RNA1509_26859, RNA1509_32034, RNA1509_36920, RNA1509_38483} {RNA1509_26859, RNA1509_32034, RNA1509_36920, RNA1509_38483, RNA815_5713}
24. MligTC455_01844 19 0.39 Mlig455_018022

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_018022 {REF} {Length: 633} {Pfam: Protein of unknown function (DUF445) [PF04286.14, score=28.6]; EcsC protein family [PF12787.9, score=22.1]; Spore germination protein GerPC [PF10737.11, score=21.1]; Protein export membrane protein [PF02355.18, score=19.8]} {Mouse: ENSMUSG00000046056, Sbsn, suprabasin, [Score=53.1, Expect=4e-08]} {RNA1509_60122} {RNA1310_51739} {RNA815_33980}
25. MligTC455_17559 113 2.35 Mlig455_022887

Neo: -

Age: logFC(26M/2M)=-0.413

 0.95 - - - - 0.950 - Mlig455_022887 {REF} {Length: 2777} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF13424.8, score=73.3]; Tetratricopeptide repeat [PF07719.19, score=51.2]; Tetratricopeptide repeat [PF13176.8, score=34.6]; Tetratricopeptide repeat [PF00515.30, score=29.0]; Tetratricopeptide repeat [PF13181.8, score=25.2]; Tetratricopeptide repeat [PF13428.8, score=19.6]} {RNA1509_46877, RNA1509_58896} {RNA1310_8825.1, RNA1509_46877, RNA1509_58896} {RNA1509_46877, RNA1509_58896, RNA815_1864.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA