M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_12974

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_12974 36 0.74 Mlig455_058152

Neo: -

Age: -

 Mlig455_058152 {REF} {Length: 1468} {NoTransDecoderORF} {RNA1509_59933} {RNA1310_80560} {RNA815_30086}

Cumulative graph for MligTC455_12974

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.64 0.978 1.00000 1.00000
RegionR2 1.284 0.978 1.00000 1.00000
RegionR3 0.426 0.978 1.00000 1.00000
RegionR4 -1.061 0.978 0.99987 1.00000
RegionR5 0.015 0.978 0.99996 1.00000
RegionR6 0.398 0.978 1.00000 1.00000
RegionR7 0.379 0.978 0.99997 1.00000
RegionR8 0.2 0.978 0.99997 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.261 0.978 0.99999 1.00000
RegenerationR2 4.139 0.978 0.00271 0.07860
RegenerationR3 3.177 0.978 0.08571 0.47684
RegenerationR4 4.415 0.978 0.00604 0.11136
RegenerationR5 3.908 0.978 0.00817 0.16394
RegenerationR6 4.86 0.978 0.00920 0.11772
RegenerationBL 4.554 0.978 0.02563 0.17606
RegenerationTP 5.406 0.978 0.02489 0.26744


Genes with expression patterns similar to MligTC455_12974

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_12974 36 0.74 Mlig455_058152

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_058152 {REF} {Length: 1468} {NoTransDecoderORF} {RNA1509_59933} {RNA1310_80560} {RNA815_30086}
2. MligTC455_51080 68 1.41 Mlig455_012101

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.555

 THAP2 1.686 - - - 0.981 0.705 - Mlig455_012101 {REF} {Length: 2218} {Pfam: THAP domain [PF05485.14, score=58.0]} {Human: ENSG00000173451, THAP2, THAP domain containing 2, [Score=64.3, Expect=1e-11]} {Mouse: ENSMUSG00000020137, Thap2, THAP domain containing, apoptosis associated protein 2, [Score=65.1, Expect=3e-12]} {RNA1509_46373} {RNA1310_33057} {RNA815_6917.1}
3. MligTC455_46018 256 5.34 Mlig455_004929, Mlig455_019730

Neo: -

Age: -

Region-enriched R2: 3.065/0.00629

 OTX1 0.976 - - - 0.976 - -

Mlig455_004929 {REF} {Length: 2609} {Pfam: Homeodomain [PF00046.31, score=71.5]} {Human: ENSG00000115507, OTX1, orthodenticle homeobox 1, [RH, Score=135, Expect=5e-36]} {Mouse: ENSMUSG00000005917, Otx1, orthodenticle homeobox 1, [RH, Score=135, Expect=5e-36]} {Dmel: FBgn0004102, oc, ocelliless, [RH, Score=120, Expect=1e-29]} {Celegans: WBGene00006652, ttx-1, Homeodomain protein TTX-1, [RH, Score=118, Expect=6e-30]} {Smed: dd_Smed_v6_15516_0_1, dd_Smed_v6_15516_0_1, [RH, Score=90.1, Expect=1e-19]} {RNA1509_34770} {RNA1310_12365.2} {RNA815_33468}

Mlig455_019730 {REF} {Length: 2056} {Pfam: Homeodomain [PF00046.31, score=73.3]} {Human: ENSG00000115507, OTX1, orthodenticle homeobox 1, [RH, Score=135, Expect=8e-36]} {Mouse: ENSMUSG00000005917, Otx1, orthodenticle homeobox 1, [RH, Score=135, Expect=6e-36]} {Dmel: FBgn0004102, oc, ocelliless, [RH, Score=121, Expect=8e-30]} {Celegans: WBGene00006652, ttx-1, Homeodomain protein TTX-1, [Score=122, Expect=4e-31]} {Smed: dd_Smed_v6_63359_0_2, dd_Smed_v6_63359_0_2, [Score=93.2, Expect=5e-23]} {RNA1509_34770} {RNA1310_12365.2} {RNA815_33468}
4. MligTC455_14503 38 0.8 Mlig455_045819

Neo: -

Age: Up-Down-Up

 0.963 - - - 0.963 - - Mlig455_045819 {REF} {Length: 1474} {NoTransDecoderORF} {RNA1509_35184, RNA1509_56373} {RNA1310_57260, RNA1509_35184, RNA1509_56373} {RNA1509_35184, RNA1509_56373, RNA815_40601}
5. MligTC455_26303 67 1.39 Mlig455_041962

Neo: -

Age: -

 0.963 - - - 0.963 - - Mlig455_041962 {REF} {Length: 3043} {TRANSSPLICED} {Pfam: Soluble NSF attachment protein, SNAP [PF14938.8, score=316.3]; Tetratricopeptide repeat [PF13424.8, score=30.1]} {Dmel: FBgn0250791, alphaSnap, alpha Soluble NSF attachment protein, [Score=56.2, Expect=3e-08]} {Celegans: WBGene00017016, snap-1, SNAP (Soluble NSF Attachment Protein) homolog, [Score=125, Expect=5e-32]} {Smed: dd_Smed_v6_2480_0_1, dd_Smed_v6_2480_0_1, [Score=107, Expect=1e-25]} {RNA1509_30138} {RNA1310_16406} {RNA815_18403}
6. MligTC455_26122 143 2.98 Mlig455_037008

Neo: -

Age: -

 GINS2 0.958 - - - 0.958 - - Mlig455_037008 {REF} {Length: 1583} {TRANSSPLICED} {Pfam: GINS complex protein [PF05916.13, score=74.5]} {Human: ENSG00000131153, GINS2, GINS complex subunit 2, [RH, Score=184, Expect=9e-59]} {Mouse: ENSMUSG00000031821, Gins2, GINS complex subunit 2 (Psf2 homolog), [RH, Score=191, Expect=2e-61]} {Dmel: FBgn0261976, Psf2, [RH, Score=150, Expect=2e-45]} {Smed: dd_Smed_v6_15389_0_1, dd_Smed_v6_15389_0_1, [RH, Score=118, Expect=1e-33]} {RNA1509_45337, RNA1509_53194} {RNA1310_24811.1, RNA1509_45337, RNA1509_53194} {RNA1509_45337, RNA1509_53194, RNA815_15403.1}
7. MligTC455_41451 401 8.36 Mlig455_058702

Neo: -

Age: -

 CBFB 0.958 - - - 0.958 - - Mlig455_058702 {REF} {Length: 1469} {Pfam: Core binding factor beta subunit [PF02312.19, score=134.9]} {Human: ENSG00000067955, CBFB, core-binding factor subunit beta, [RH, Score=99.0, Expect=2e-24]} {Mouse: ENSMUSG00000031885, Cbfb, core binding factor beta, [RH, Score=99.4, Expect=1e-24]} {Dmel: FBgn0013755, Bro, Brother, [Score=96.7, Expect=1e-23]} {Smed: dd_Smed_v6_2875_0_1, dd_Smed_v6_2875_0_1, [RH, Score=93.2, Expect=4e-23]} {RNA1310_43420} {RNA815_49748}
8. MligTC455_31668 78 1.62 Mlig455_050217

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_050217 {REF} {Length: 1466} {RNA1509_36985} {RNA1310_22561} {RNA815_12605}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA