M. lignano Tomo-Seq
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Results for MligTC455_13063

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13063 16 0.33 Mlig455_014773

Neo: -

Age: -

 LRRC73 Mlig455_014773 {REF} {Length: 1587} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=38.3]} {Human: ENSG00000204052, LRRC73, leucine rich repeat containing 73, [RH, Score=120, Expect=4e-31]} {Mouse: ENSMUSG00000071073, Lrrc73, leucine rich repeat containing 73, [RH, Score=120, Expect=3e-31]} {RNA1509_57279} {RNA1310_21658, RNA1509_57279} {RNA1509_57279, RNA815_5530.1}

Cumulative graph for MligTC455_13063

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.82 0.882 0.99970 1.00000
RegionR2 4.114 0.882 0.99998 1.00000
RegionR3 0.215 0.882 0.99983 1.00000
RegionR4 0.151 0.882 0.69201 0.98321
RegionR5 1.549 0.882 0.24635 0.56023
RegionR6 0.275 0.882 0.99982 1.00000
RegionR7 0.085 0.882 0.99984 1.00000
RegionR8 0.431 0.882 0.99986 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.726 0.882 0.99992 1.00000
RegenerationR2 3.433 0.882 0.02291 0.24881
RegenerationR3 6.671 0.882 0.00052 0.03375
RegenerationR4 2.148 0.882 0.09594 0.48098
RegenerationR5 3.244 0.882 0.01199 0.19325
RegenerationR6 2.552 0.882 0.99990 1.00000
RegenerationBL 2.023 0.882 1.00000 1.00000
RegenerationTP 5.225 0.882 0.05930 0.39454


Genes with expression patterns similar to MligTC455_13063

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13063 16 0.33 Mlig455_014773

Neo: -

Age: -

 LRRC73 3 - 1.000 - - 1.000 1.000 Mlig455_014773 {REF} {Length: 1587} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=38.3]} {Human: ENSG00000204052, LRRC73, leucine rich repeat containing 73, [RH, Score=120, Expect=4e-31]} {Mouse: ENSMUSG00000071073, Lrrc73, leucine rich repeat containing 73, [RH, Score=120, Expect=3e-31]} {RNA1509_57279} {RNA1310_21658, RNA1509_57279} {RNA1509_57279, RNA815_5530.1}
2. MligTC455_41289 88 1.84 Mlig455_006035

Neo: -

Age: Up-Down-Down

 0.978 - - - - 0.978 - Mlig455_006035 {REF} {Length: 1612} {RNA1509_22012} {RNA1310_42259} {RNA815_41617}
3. MligTC455_19179 442 9.21 Mlig455_059343

Neo: -

Age: Up-Down-Up

 0.972 - - - - 0.972 - Mlig455_059343 {REF} {Length: 1621} {Smed: dd_Smed_v6_5147_0_1, dd_Smed_v6_5147_0_1, [RH, Score=62.8, Expect=2e-11]} {RNA1509_38428} {RNA1310_38164} {RNA815_17603}
4. MligTC455_31326 15 0.3 Mlig455_056963

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.619

 0.965 - 0.965 - - - - Mlig455_056963 {REF} {Length: 2096} {Smed: dd_Smed_v6_129_2_2, dd_Smed_v6_129_2_2, [Score=80.5, Expect=5e-16]} {RNA1509_49065} {RNA1310_3059.1} {RNA815_7477.1}
5. MligTC455_20630 49 1.03 Mlig455_015973

Neo: -

Age: -

 CHRND 0.964 - - - - 0.964 - Mlig455_015973 {REF} {Length: 1842} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=127.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=22.4]} {Human: ENSG00000135902, CHRND, cholinergic receptor nicotinic delta subunit, [Score=118, Expect=6e-29]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=115, Expect=5e-28]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=114, Expect=2e-27]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=114, Expect=2e-27]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=113, Expect=5e-27]} {Mouse: ENSMUSG00000026251, Chrnd, cholinergic receptor, nicotinic, delta polypeptide, [Score=117, Expect=2e-28]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=112, Expect=4e-27]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=112, Expect=4e-27]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=114, Expect=1e-27]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=123, Expect=5e-31]} {Smed: dd_Smed_v6_29533_0_1, dd_Smed_v6_29533_0_1, [Score=177, Expect=3e-51]} {RNA1310_42200} {RNA815_41928}
6. MligTC455_05361 38 0.78 Mlig455_067859

Neo: -

Age: -

 LHFPL6 0.963 - - - - 0.963 - Mlig455_067859 {REF} {Length: 2249} {Pfam: Lipoma HMGIC fusion partner-like protein [PF10242.11, score=111.7]; PMP-22/EMP/MP20/Claudin tight junction [PF13903.8, score=19.2]; Lipid II flippase MurJ [PF03023.16, score=19.0]} {Human: ENSG00000183722, LHFPL6, LHFPL tetraspan subfamily member 6, [RH, Score=80.9, Expect=5e-17]} {Mouse: ENSMUSG00000048332, Lhfp, lipoma HMGIC fusion partner, [RH, Score=79.0, Expect=2e-16]} {Smed: dd_Smed_v6_9373_0_1, dd_Smed_v6_9373_0_1, [RH, Score=179, Expect=1e-52]} {RNA1310_36894} {RNA815_56428}
7. MligTC455_20684 26 0.54 Mlig455_037881

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_037881 {REF} {Length: 3446} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=60.0]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=26.4]} {Dmel: FBgn0053696, CNMaR, CNMamide Receptor, [Score=62.0, Expect=8e-10]} {Celegans: WBGene00019616, nmur-2, NMUR (NeuroMedin U Receptor) homolog, [Score=63.5, Expect=1e-10]} {Smed: dd_Smed_v6_6153_0_1, dd_Smed_v6_6153_0_1, [Score=82.4, Expect=9e-17]} {RNA1509_39458} {RNA1310_6322, RNA1509_39458} {RNA1509_39458, RNA815_7873}
8. MligTC455_37659 79 1.65 Mlig455_027778, Mlig455_063481

Neo: -

Age: -

 0.953 - - - - 0.953 -

Mlig455_027778 {REF} {Length: 679} {NoTransDecoderORF} {RNA1310_17472}

Mlig455_063481 {REF} {Length: 719} {NoTransDecoderORF} {RNA1310_17472}
9. MligTC455_23004 1848 38.5 Mlig455_007165

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_007165 {REF} {Length: 829} {RNA1509_10561} {RNA1310_48931.1} {RNA815_23508}

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