M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_14086

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_14086 13 0.27 Mlig455_005016

Neo: -

Age: Down-Up-Down

 SEC14L4 Mlig455_005016 {REF} {Length: 1616} {Pfam: CRAL/TRIO domain [PF00650.22, score=73.6]} {Human: ENSG00000133488, SEC14L4, SEC14 like lipid binding 4, [Score=138, Expect=4e-37]; ENSG00000100003, SEC14L2, SEC14 like lipid binding 2, [Score=134, Expect=2e-35]} {Mouse: ENSMUSG00000054986, Sec14l3, SEC14-like lipid binding 3, [Score=140, Expect=9e-38]; ENSMUSG00000003585, Sec14l2, SEC14-like lipid binding 2, [Score=139, Expect=2e-37]} {Dmel: FBgn0035146, CG13893, [Score=89.7, Expect=1e-19]} {Celegans: WBGene00011962, T23G5.2, CRAL-TRIO domain-containing protein T23G5.2, [Score=98.6, Expect=2e-22]} {Smed: dd_Smed_v6_12821_0_1, dd_Smed_v6_12821_0_1, [Score=149, Expect=9e-42]} {RNA1509_52050} {RNA1310_31007} {RNA815_24143}

Cumulative graph for MligTC455_14086

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.372 0.794 0.99965 1.00000
RegionR2 3.075 0.794 0.85057 1.00000
RegionR3 0.916 0.794 0.97986 1.00000
RegionR4 -0.655 0.794 0.69395 0.98490
RegionR5 0.105 0.794 0.99696 1.00000
RegionR6 -1.285 0.794 0.99961 1.00000
RegionR7 0.053 0.794 0.99980 1.00000
RegionR8 0.162 0.794 0.99980 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.971 0.794 1.00000 1.00000
RegenerationR2 1.533 0.794 0.15249 0.58738
RegenerationR3 3.488 0.794 0.54588 0.88135
RegenerationR4 2.192 0.794 0.78672 0.98277
RegenerationR5 1.151 0.794 0.48331 0.84788
RegenerationR6 1.782 0.794 1.00000 1.00000
RegenerationBL 0.999 0.794 1.00000 1.00000
RegenerationTP 0.768 0.794 1.00000 1.00000


Genes with expression patterns similar to MligTC455_14086

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_14086 13 0.27 Mlig455_005016

Neo: -

Age: Down-Up-Down

 SEC14L4 2 - - - - 1.000 1.000 Mlig455_005016 {REF} {Length: 1616} {Pfam: CRAL/TRIO domain [PF00650.22, score=73.6]} {Human: ENSG00000133488, SEC14L4, SEC14 like lipid binding 4, [Score=138, Expect=4e-37]; ENSG00000100003, SEC14L2, SEC14 like lipid binding 2, [Score=134, Expect=2e-35]} {Mouse: ENSMUSG00000054986, Sec14l3, SEC14-like lipid binding 3, [Score=140, Expect=9e-38]; ENSMUSG00000003585, Sec14l2, SEC14-like lipid binding 2, [Score=139, Expect=2e-37]} {Dmel: FBgn0035146, CG13893, [Score=89.7, Expect=1e-19]} {Celegans: WBGene00011962, T23G5.2, CRAL-TRIO domain-containing protein T23G5.2, [Score=98.6, Expect=2e-22]} {Smed: dd_Smed_v6_12821_0_1, dd_Smed_v6_12821_0_1, [Score=149, Expect=9e-42]} {RNA1509_52050} {RNA1310_31007} {RNA815_24143}
2. MligTC455_07424 29 0.6 Mlig455_052614

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_052614 {REF} {Length: 721} {RNA1310_31171}
3. MligTC455_05978 20 0.42 Mlig455_000159, Mlig455_000172

Neo: -

Age: -

 0.991 - - - - 0.991 -

Mlig455_000159 {REF} {Length: 914} {RNA1509_2330} {RNA1310_37520} {RNA815_22367}

Mlig455_000172 {REF} {Length: 910} {RNA1509_2330} {RNA1310_37520} {RNA815_22367}
4. MligTC455_19025 86 1.79 Mlig455_037631

Neo: Int S/G2/M

Age: Up-Down-Down

 0.978 - - - - 0.978 - Mlig455_037631 {REF} {Length: 2219} {RNA1509_32306} {RNA1310_31823.1} {RNA815_14423}
5. MligTC455_07650 60 1.26 Mlig455_060301

Neo: -

Age: -

Region-enriched R4: 4.139/0.03476

 0.974 - - - - - 0.974 Mlig455_060301 {REF} {Length: 1050} {TRANSSPLICED} {RNA1509_8737} {RNA1310_8838} {RNA815_41288}
6. MligTC455_11660 8 0.17 Mlig455_064306

Neo: -

Age: Up-Down-Down

 0.969 - - - - 0.969 - Mlig455_064306 {REF} {Length: 789} {Pfam: Integrase core domain [PF00665.28, score=46.4]; Integrase zinc binding domain [PF17921.3, score=28.1]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=132, Expect=1e-35]} {RNA1509_2485} {RNA1310_391} {RNA815_131.1}
7. MligTC455_40565 18 0.37 Mlig455_024121

Neo: -

Age: -

Region-enriched R5: 2.986/0.01190

 0.966 - - - - 0.966 - Mlig455_024121 {REF} {Length: 2974} {TRANSSPLICED} {Pfam: Flavin containing amine oxidoreductase [PF01593.26, score=49.1]} {Dmel: FBgn0036749, CG7460, [Score=62.0, Expect=9e-10]} {RNA1509_44166} {RNA1310_52978} {RNA815_38183}
8. MligTC455_47731 19 0.4 Mlig455_061021

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_061021 {REF} {Length: 1271} {NoTransDecoderORF} {RNA1509_46050} {RNA1310_22065.1}
9. MligTC455_26248 162 3.38 Mlig455_052600, Mlig455_052650

Neo: -

Age: -

 0.964 - - - - 0.964 -

Mlig455_052600 {REF} {Length: 3376} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=155.1]} {Smed: dd_Smed_v6_9633_0_1, dd_Smed_v6_9633_0_1, [Score=67.0, Expect=1e-11]} {RNA1509_10005} {RNA1310_10838.1} {RNA815_11723}

Mlig455_052650 {REF} {Length: 3364} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=155.1]} {Smed: dd_Smed_v6_9633_0_1, dd_Smed_v6_9633_0_1, [Score=67.0, Expect=1e-11]} {RNA1509_10005} {RNA1310_10838.1} {RNA815_11723}
10. MligTC455_44998 385 8.02 Mlig455_041387

Neo: -

Age: logFC(26M/2M)=-0.278

Region-enriched R3: 5.457/0.00000
Region-enriched R2: 4.938/0.00139

 FZD4 0.964 - - - - 0.964 - Mlig455_041387 {REF} {Length: 3889} {Pfam: Frizzled/Smoothened family membrane region [PF01534.19, score=311.1]; Fz domain [PF01392.24, score=97.0]} {Human: ENSG00000174804, FZD4, frizzled class receptor 4, [Score=416, Expect=2e-138]} {Mouse: ENSMUSG00000049791, Fzd4, frizzled class receptor 4, [Score=414, Expect=4e-138]} {Dmel: FBgn0001085, fz, frizzled, [Score=284, Expect=2e-87]} {Celegans: WBGene00003006, lin-17, Transmembrane receptor LIN-17, [RH, Score=263, Expect=9e-80]} {Smed: dd_Smed_v6_7210_0_1, dd_Smed_v6_7210_0_1, [Score=435, Expect=8e-146]} {RNA1509_26315} {RNA1310_7806, RNA1509_26315} {RNA1509_26315, RNA815_21086}
11. MligTC455_13082 8 0.17 Mlig455_048429

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_048429 {REF} {Length: 2938} {Pfam: Peptidase family M13 [PF05649.15, score=24.6]}
12. MligTC455_44531 147 3.06 Mlig455_037957

Neo: -

Age: Down-Up-Down

Region-enriched R4: 4.356/0.00027

 0.963 - - - - - 0.963 Mlig455_037957 {REF} {Length: 800} {Pfam: Universal stress protein family [PF00582.28, score=82.2]} {Smed: dd_Smed_v6_3388_0_1, dd_Smed_v6_3388_0_1, [Score=82.8, Expect=1e-20]} {RNA1509_59467} {RNA1310_35905} {RNA815_18113}
13. MligTC455_24692 715 14.89 Mlig455_044666

Neo: -

Age: logFC(26M/2M)=0.434

Region-enriched R4: 2.740/0.00734

 0.959 - - - - - 0.959 Mlig455_044666 {REF} {Length: 4889} {RNA1509_27721} {RNA1310_27344} {RNA815_5068.1}
14. MligTC455_51176 71 1.48 Mlig455_024765

Neo: -

Age: -

 SAXO1 0.959 - - - - 0.959 - Mlig455_024765 {REF} {Length: 1803} {Human: ENSG00000155875, SAXO1, stabilizer of axonemal microtubules 1, [Score=48.5, Expect=9e-06]} {Smed: dd_Smed_v6_5551_0_1, dd_Smed_v6_5551_0_1, [Score=55.5, Expect=2e-08]} {RNA1509_36492} {RNA1310_14560} {RNA815_5366}
15. MligTC455_16622 10 0.21 Mlig455_057188

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_057188 {REF} {Length: 2124} {RNA1310_87812}
16. MligTC455_33202 92 1.92 Mlig455_016989, Mlig455_021240, Mlig455_062989

Neo: -

Age: -

 FCN2 0.955 - - - - 0.955 -

Mlig455_016989 {REF} {Length: 3214} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=143.0]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=135, Expect=2e-37]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=130, Expect=5e-34]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=128, Expect=1e-33]; ENSMUSG00000026938, Fcna, ficolin A, [Score=126, Expect=1e-33]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=125, Expect=2e-32]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=124, Expect=5e-32]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=122, Expect=2e-32]} {Dmel: FBgn0034160, CG5550, [RH, Score=136, Expect=2e-38]} {Celegans: WBGene00017013, ensh-1, [RH, Score=66.2, Expect=4e-12]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=46.2, Expect=1e-06]} {RNA1509_26827} {RNA1310_48119} {RNA815_52558}

Mlig455_021240 {REF} {Length: 2191} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=112.3]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=104, Expect=6e-26]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=99.0, Expect=3e-23]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=98.2, Expect=4e-23]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=97.4, Expect=7e-23]; ENSMUSG00000026938, Fcna, ficolin A, [Score=97.1, Expect=3e-23]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=95.5, Expect=3e-22]; ENSMUSG00000042436, Mfap4, microfibrillar-associated protein 4, [Score=94.4, Expect=1e-22]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=93.6, Expect=4e-22]} {Dmel: FBgn0034160, CG5550, [Score=104, Expect=9e-27]} {Celegans: WBGene00017013, ensh-1, [Score=52.8, Expect=8e-08]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=46.6, Expect=8e-07]} {RNA1509_26827} {RNA1310_48119} {RNA815_52558}

Mlig455_062989 {REF} {Length: 1896} {NoTransDecoderORF} {RNA1509_54825} {RNA1310_118627, RNA1509_54825} {RNA1509_54825, RNA815_47526}
17. MligTC455_52826 18 0.37 Mlig455_062659

Neo: -

Age: Down-Down-Down

 USE1 0.952 - - - - - 0.952 Mlig455_062659 {REF} {Length: 1159} {TRANSSPLICED} {Pfam: Membrane fusion protein Use1 [PF09753.11, score=152.5]} {Human: ENSG00000053501, USE1, unconventional SNARE in the ER 1, [RH, Score=84.7, Expect=2e-18]} {Mouse: ENSMUSG00000002395, Use1, unconventional SNARE in the ER 1 homolog (S. cerevisiae), [RH, Score=79.7, Expect=1e-16]} {Dmel: FBgn0035965, Use1, Unconventional SNARE in the ER 1, [RH, Score=77.8, Expect=3e-16]} {RNA1509_10490} {RNA1310_27716.1} {RNA815_34426}
18. MligTC455_25151 165 3.44 Mlig455_040052

Neo: -

Age: Down-Up-Up

Region-enriched R8: 4.085/0.00147
Region-enriched R7: 3.011/0.04533

 0.951 - - - - 0.951 - Mlig455_040052 {REF} {Length: 2343} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=40.6]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=22.6]} {Smed: dd_Smed_v6_2982_0_2, dd_Smed_v6_2982_0_2, [Score=94.4, Expect=5e-22]} {RNA1509_20770} {RNA1310_38403} {RNA815_6249}
19. MligTC455_36944 22 0.45 Mlig455_065298, Mlig455_065320

Neo: -

Age: Up-Down-Up

 NR2F1 0.95 - - - - 0.950 -

Mlig455_065298 {REF} {Length: 2485} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=100.7]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=95.1]} {Human: ENSG00000175745, NR2F1, nuclear receptor subfamily 2 group F member 1, [RH, Score=241, Expect=4e-73]; ENSG00000185551, NR2F2, nuclear receptor subfamily 2 group F member 2, [RH, Score=240, Expect=2e-72]} {Mouse: ENSMUSG00000069171, Nr2f1, nuclear receptor subfamily 2, group F, member 1, [RH, Score=240, Expect=2e-72]; ENSMUSG00000030551, Nr2f2, nuclear receptor subfamily 2, group F, member 2, [RH, Score=240, Expect=1e-72]} {Dmel: FBgn0003651, svp, seven up, [RH, Score=240, Expect=3e-71]} {Celegans: WBGene00006790, unc-55, UNC-55b isoform, [RH, Score=150, Expect=4e-40]} {Smed: dd_Smed_v6_33286_0_1, dd_Smed_v6_33286_0_1, [RH, Score=211, Expect=4e-61]}

Mlig455_065320 {REF} {Length: 3080} {Pfam: Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=76.1]} {Human: ENSG00000175745, NR2F1, nuclear receptor subfamily 2 group F member 1, [Score=215, Expect=6e-67]; ENSG00000185551, NR2F2, nuclear receptor subfamily 2 group F member 2, [Score=214, Expect=5e-66]} {Mouse: ENSMUSG00000069171, Nr2f1, nuclear receptor subfamily 2, group F, member 1, [Score=215, Expect=2e-68]; ENSMUSG00000030551, Nr2f2, nuclear receptor subfamily 2, group F, member 2, [Score=214, Expect=4e-66]} {Dmel: FBgn0003651, svp, seven up, [Score=211, Expect=2e-66]} {Celegans: WBGene00006790, unc-55, UNC-55b isoform, [Score=69.3, Expect=4e-13]} {Smed: dd_Smed_v6_33286_0_1, dd_Smed_v6_33286_0_1, [Score=183, Expect=9e-54]}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA