M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_47731

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_47731 19 0.40 Mlig455_061021

Neo: -

Age: -

 Mlig455_061021 {REF} {Length: 1271} {NoTransDecoderORF} {RNA1509_46050} {RNA1310_22065.1}

Cumulative graph for MligTC455_47731

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.872 0.851 0.99980 1.00000
RegionR2 -1.855 0.851 0.99965 1.00000
RegionR3 -1.303 0.851 0.99981 1.00000
RegionR4 2.92 0.851 0.99972 1.00000
RegionR5 2.667 0.851 0.01186 0.06535
RegionR6 2.78 0.851 0.35010 0.93491
RegionR7 -1.666 0.851 1.00000 1.00000
RegionR8 0.329 0.851 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.513 0.851 1.00000 1.00000
RegenerationR2 0.884 0.851 0.46471 0.85492
RegenerationR3 1.519 0.851 0.18550 0.62207
RegenerationR4 -0.657 0.851 0.99953 1.00000
RegenerationR5 -2.214 0.851 0.12083 0.52040
RegenerationR6 -1.35 0.851 0.13616 0.45276
RegenerationBL -3.181 0.851 1.00000 1.00000
RegenerationTP -1.784 0.851 1.00000 1.00000


Genes with expression patterns similar to MligTC455_47731

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_47731 19 0.4 Mlig455_061021

Neo: -

Age: -

 3 - - 1.000 1.000 1.000 - Mlig455_061021 {REF} {Length: 1271} {NoTransDecoderORF} {RNA1509_46050} {RNA1310_22065.1}
2. MligTC455_49187 2581 53.77 Mlig455_002170

Neo: -

Age: -

Region-enriched R6: 6.621/0.00001

 0.982 - - 0.982 - - - Mlig455_002170 {REF} {Length: 748} {RNA1509_22237, RNA1509_6498} {RNA1310_49486, RNA1509_22237, RNA1509_6498} {RNA1509_22237, RNA1509_6498, RNA815_5449}
3. MligTC455_45991 443 9.24 Mlig455_037183, Mlig455_043981, Mlig455_052335

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.420

 0.978 - - - 0.978 - -

Mlig455_037183 {REF} {Length: 1448} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.0]; RING-type zinc-finger [PF13445.8, score=18.8]} {Mouse: ENSMUSG00000062077, Trim54, tripartite motif-containing 54, [Score=47.4, Expect=1e-05]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741}

Mlig455_043981 {REF} {Length: 1986} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.0]; RING-type zinc-finger [PF13445.8, score=18.8]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741}

Mlig455_052335 {REF} {Length: 1323} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=20.5]} {Mouse: ENSMUSG00000062077, Trim54, tripartite motif-containing 54, [Score=47.4, Expect=1e-05]} {RNA1509_56376} {RNA1310_27464} {RNA815_18741}
4. MligTC455_27360 243 5.07 Mlig455_027129

Neo: -

Age: logFC(26M/2M)=-0.398

Region-enriched R6: 2.910/0.00152

 SEPT6 0.97 - - 0.970 - - - Mlig455_027129 {REF} {Length: 3016} {Pfam: Septin [PF00735.20, score=240.0]; Protein of unknown function (DUF445) [PF04286.14, score=21.9]; Gp5 C-terminal repeat (3 copies) [PF06715.14, score=20.9]} {Human: ENSG00000125354, SEPT6, septin 6, [Score=291, Expect=7e-92]; ENSG00000164402, SEPT8, septin 8, [Score=289, Expect=7e-92]; ENSG00000138758, SEPT11, septin 11, [Score=288, Expect=5e-91]; ENSG00000186522, SEPT10, septin 10, [Score=285, Expect=2e-89]; ENSG00000154997, SEPT14, septin 14, [Score=280, Expect=2e-87]} {Mouse: ENSMUSG00000050379, Sept6, septin 6, [Score=291, Expect=5e-92]; ENSMUSG00000019917, Sept10, septin 10, [Score=291, Expect=2e-92]; ENSMUSG00000018398, Sept8, septin 8, [Score=290, Expect=3e-91]; ENSMUSG00000058013, Sept11, septin 11, [Score=289, Expect=3e-91]} {Dmel: FBgn0014029, Sep2, Septin 2, [Score=303, Expect=7e-98]} {Celegans: WBGene00006795, unc-61, [Score=258, Expect=9e-79]} {Smed: dd_Smed_v6_1509_0_1, dd_Smed_v6_1509_0_1, [Score=315, Expect=4e-102]} {RNA1509_51044} {RNA1310_9340.1} {RNA815_1361.1}
5. MligTC455_49188 2341 48.77 Mlig455_002269, Mlig455_002314

Neo: -

Age: -

Region-enriched R6: 6.536/0.00415

 0.969 - - 0.969 - - -

Mlig455_002269 {REF} {Length: 959} {RNA1509_43329} {RNA1310_49486} {RNA815_5449}

Mlig455_002314 {REF} {Length: 1882} {RNA1509_18874, RNA1509_2814, RNA1509_43329} {RNA1310_49486, RNA1509_18874, RNA1509_2814, RNA1509_43329} {RNA1509_18874, RNA1509_2814, RNA1509_43329, RNA815_5449}
6. MligTC455_07189 68 1.41 Mlig455_027377

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_027377 {REF} {Length: 1255} {RNA1310_67025} {RNA815_44910}
7. MligTC455_14086 13 0.27 Mlig455_005016

Neo: -

Age: Down-Up-Down

 SEC14L4 0.965 - - - - 0.965 - Mlig455_005016 {REF} {Length: 1616} {Pfam: CRAL/TRIO domain [PF00650.22, score=73.6]} {Human: ENSG00000133488, SEC14L4, SEC14 like lipid binding 4, [Score=138, Expect=4e-37]; ENSG00000100003, SEC14L2, SEC14 like lipid binding 2, [Score=134, Expect=2e-35]} {Mouse: ENSMUSG00000054986, Sec14l3, SEC14-like lipid binding 3, [Score=140, Expect=9e-38]; ENSMUSG00000003585, Sec14l2, SEC14-like lipid binding 2, [Score=139, Expect=2e-37]} {Dmel: FBgn0035146, CG13893, [Score=89.7, Expect=1e-19]} {Celegans: WBGene00011962, T23G5.2, CRAL-TRIO domain-containing protein T23G5.2, [Score=98.6, Expect=2e-22]} {Smed: dd_Smed_v6_12821_0_1, dd_Smed_v6_12821_0_1, [Score=149, Expect=9e-42]} {RNA1509_52050} {RNA1310_31007} {RNA815_24143}
8. MligTC455_15196 47 0.97 Mlig455_005312

Neo: -

Age: -

 0.965 - - 0.965 - - - Mlig455_005312 {REF} {Length: 5287} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=23.8]} {RNA1509_52065} {RNA1310_20362} {RNA815_22721}
9. MligTC455_53373 23 0.49 Mlig455_013613

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_013613 {REF} {Length: 2312} {RNA1310_61582} {RNA815_35377}
10. MligTC455_05978 20 0.42 Mlig455_000159, Mlig455_000172

Neo: -

Age: -

 0.962 - - - - 0.962 -

Mlig455_000159 {REF} {Length: 914} {RNA1509_2330} {RNA1310_37520} {RNA815_22367}

Mlig455_000172 {REF} {Length: 910} {RNA1509_2330} {RNA1310_37520} {RNA815_22367}
11. MligTC455_34352 325 6.77 Mlig455_064843

Neo: Germline

Age: -

 0.962 - - 0.962 - - - Mlig455_064843 {REF} {Length: 4089} {TRANSSPLICED} {RNA1509_38722, RNA1509_9708} {RNA1310_5305, RNA1509_38722, RNA1509_9708} {RNA1509_38722, RNA1509_9708, RNA815_5086}
12. MligTC455_44998 385 8.02 Mlig455_041387

Neo: -

Age: logFC(26M/2M)=-0.278

Region-enriched R3: 5.457/0.00000
Region-enriched R2: 4.938/0.00139

 FZD4 0.961 - - - - 0.961 - Mlig455_041387 {REF} {Length: 3889} {Pfam: Frizzled/Smoothened family membrane region [PF01534.19, score=311.1]; Fz domain [PF01392.24, score=97.0]} {Human: ENSG00000174804, FZD4, frizzled class receptor 4, [Score=416, Expect=2e-138]} {Mouse: ENSMUSG00000049791, Fzd4, frizzled class receptor 4, [Score=414, Expect=4e-138]} {Dmel: FBgn0001085, fz, frizzled, [Score=284, Expect=2e-87]} {Celegans: WBGene00003006, lin-17, Transmembrane receptor LIN-17, [RH, Score=263, Expect=9e-80]} {Smed: dd_Smed_v6_7210_0_1, dd_Smed_v6_7210_0_1, [Score=435, Expect=8e-146]} {RNA1509_26315} {RNA1310_7806, RNA1509_26315} {RNA1509_26315, RNA815_21086}
13. MligTC455_13082 8 0.17 Mlig455_048429

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_048429 {REF} {Length: 2938} {Pfam: Peptidase family M13 [PF05649.15, score=24.6]}
14. MligTC455_25151 165 3.44 Mlig455_040052

Neo: -

Age: Down-Up-Up

Region-enriched R8: 4.085/0.00147
Region-enriched R7: 3.011/0.04533

 0.957 - - - - 0.957 - Mlig455_040052 {REF} {Length: 2343} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=40.6]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=22.6]} {Smed: dd_Smed_v6_2982_0_2, dd_Smed_v6_2982_0_2, [Score=94.4, Expect=5e-22]} {RNA1509_20770} {RNA1310_38403} {RNA815_6249}
15. MligTC455_25371 13 0.26 Mlig455_014547, Mlig455_014550

Neo: -

Age: Up-Down-Up

 NCAM2 0.957 - - - - 0.957 -

Mlig455_014547 {REF} {Length: 1183} {Pfam: Integrase zinc binding domain [PF17921.3, score=56.1]} {RNA1509_45000} {RNA1310_89740}

Mlig455_014550 {REF} {Length: 5582} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF13927.8, score=102.0]; Immunoglobulin I-set domain [PF07679.18, score=80.2]; Immunoglobulin domain [PF13895.8, score=71.6]; Immunoglobulin domain [PF00047.27, score=52.0]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=43.9]; Immunoglobulin V-set domain [PF07686.19, score=29.5]} {Human: ENSG00000154654, NCAM2, neural cell adhesion molecule 2, [Score=122, Expect=3e-28]} {Mouse: ENSMUSG00000022762, Ncam2, neural cell adhesion molecule 2, [Score=115, Expect=3e-26]} {Dmel: FBgn0033159, Dscam1, Down syndrome cell adhesion molecule 1, [Score=60.8, Expect=4e-09]} {Celegans: WBGene00001863, him-4, Hemicentin; High Incidence of Males (Increased X chromosome loss), [Score=70.1, Expect=4e-12]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=53.9, Expect=3e-07]} {RNA1509_40266} {RNA1310_7040} {RNA815_17849}
16. MligTC455_10047 14 0.3 Mlig455_023854

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_023854 {REF} {Length: 1351} {NoTransDecoderORF} {RNA1509_41176} {RNA1310_147096} {RNA815_16891}
17. MligTC455_19025 86 1.79 Mlig455_037631

Neo: Int S/G2/M

Age: Up-Down-Down

 0.956 - - - - 0.956 - Mlig455_037631 {REF} {Length: 2219} {RNA1509_32306} {RNA1310_31823.1} {RNA815_14423}
18. MligTC455_25059 318 6.63 Mlig455_011858

Neo: -

Age: logFC(26M/2M)=-0.243

Regeneration-downregulated BL: -7.201

Regeneration-depleted BL: -7.201

 RASEF 0.956 - - - - 0.956 - Mlig455_011858 {REF} {Length: 4102} {Pfam: Ras family [PF00071.24, score=167.3]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=104.0]; ADP-ribosylation factor family [PF00025.23, score=55.2]; EF-hand domain pair [PF13499.8, score=42.0]; EF hand [PF00036.34, score=41.4]; EF-hand domain [PF13405.8, score=39.3]; 50S ribosome-binding GTPase [PF01926.25, score=35.1]; EF-hand domain pair [PF13833.8, score=33.0]; EF hand [PF13202.8, score=28.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.9]; Gtr1/RagA G protein conserved region [PF04670.14, score=21.8]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.8]} {Human: ENSG00000165105, RASEF, RAS and EF-hand domain containing, [RH, Score=221, Expect=9e-61]} {Mouse: ENSMUSG00000043003, Rasef, RAS and EF hand domain containing, [RH, Score=222, Expect=9e-63]} {Dmel: FBgn0285937, Rab1, [Score=145, Expect=2e-39]} {Celegans: WBGene00016344, rsef-1, Ras and EF-hand domain-containing protein homolog, [RH, Score=188, Expect=3e-50]} {Smed: dd_Smed_v6_4284_0_1, dd_Smed_v6_4284_0_1, [RH, Score=225, Expect=2e-62]} {RNA1509_21698} {RNA1310_2939.1, RNA1509_21698} {RNA1509_21698, RNA815_9067}
19. MligTC455_40565 18 0.37 Mlig455_024121

Neo: -

Age: -

Region-enriched R5: 2.986/0.01190

 0.956 - - - - 0.956 - Mlig455_024121 {REF} {Length: 2974} {TRANSSPLICED} {Pfam: Flavin containing amine oxidoreductase [PF01593.26, score=49.1]} {Dmel: FBgn0036749, CG7460, [Score=62.0, Expect=9e-10]} {RNA1509_44166} {RNA1310_52978} {RNA815_38183}
20. MligTC455_50422 125 2.6 Mlig455_014719

Neo: -

Age: -

Region-enriched R2: 3.621/0.01085

 GALNT1 0.956 - - - - 0.956 - Mlig455_014719 {REF} {Length: 2844} {Pfam: Glycosyl transferase family 2 [PF00535.28, score=108.6]; N-terminal domain of galactosyltransferase [PF02709.16, score=19.9]} {Human: ENSG00000141429, GALNT1, polypeptide N-acetylgalactosaminyltransferase 1, [Score=328, Expect=8e-108]; ENSG00000144278, GALNT13, polypeptide N-acetylgalactosaminyltransferase 13, [Score=320, Expect=1e-102]} {Mouse: ENSMUSG00000000420, Galnt1, polypeptide N-acetylgalactosaminyltransferase 1, [Score=328, Expect=7e-106]; ENSMUSG00000060988, Galnt13, polypeptide N-acetylgalactosaminyltransferase 13, [Score=320, Expect=9e-103]} {Dmel: FBgn0050463, CG30463, [Score=349, Expect=3e-113]} {Celegans: WBGene00001630, gly-5, Polypeptide N-acetylgalactosaminyltransferase 5, [Score=359, Expect=2e-117]} {Smed: dd_Smed_v6_4615_0_1, dd_Smed_v6_4615_0_1, [Score=379, Expect=3e-125]} {RNA1509_29632} {RNA1310_10752} {RNA815_14192.1}
21. MligTC455_11660 8 0.17 Mlig455_064306

Neo: -

Age: Up-Down-Down

 0.955 - - - - 0.955 - Mlig455_064306 {REF} {Length: 789} {Pfam: Integrase core domain [PF00665.28, score=46.4]; Integrase zinc binding domain [PF17921.3, score=28.1]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=132, Expect=1e-35]} {RNA1509_2485} {RNA1310_391} {RNA815_131.1}
22. MligTC455_46418 178 3.71 Mlig455_056428

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_056428 {REF} {Length: 3626} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=49.8]} {RNA1509_14623} {RNA1310_25579, RNA1509_14623} {RNA1509_14623, RNA815_35028}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA